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6AIS
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BU of 6ais by Molmil
Loop deletion mutant (deleting two residues)
Descriptor: Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2018-08-24
Release date:2019-07-03
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Domain-Swapping Design by Polyproline Rod Insertion.
Chembiochem, 20, 2019
6KBC
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BU of 6kbc by Molmil
Crystal structure of CghA with Sch210972
Descriptor: (2S)-3-[(2S,4E)-4-[[(1R,2S,4aR,6S,8R,8aS)-2-[(E)-but-2-en-2-yl]-6,8-dimethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalen-1-yl]-oxidanyl-methylidene]-3,5-bis(oxidanylidene)pyrrolidin-2-yl]-2-methyl-2-oxidanyl-propanoic acid, CghA
Authors:Hara, K, Hashimoto, H, Maeda, N, Sato, M, Watanabe, K.
Deposit date:2019-06-24
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Catalytic mechanism and endo-to-exo selectivity reversion of an octalin-forming natural Diels-Alderase
Nat Catal, 2021
2PI3
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BU of 2pi3 by Molmil
The crystal structure of OspA mutant
Descriptor: Outer surface protein A
Authors:Biancalana, M, Makabe, K, Terechko, V, Koide, S.
Deposit date:2007-04-12
Release date:2008-05-27
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Aromatic cluster mutations produce focal modulations of beta-sheet structure.
Protein Sci., 24, 2015
3W3D
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BU of 3w3d by Molmil
Crystal structure of smooth muscle G actin DNase I complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Actin, gamma-enteric smooth muscle, ...
Authors:Sakabe, N, Sakabe, K, Sasaki, K, Kondo, H, Shimomur, M.
Deposit date:2012-12-20
Release date:2013-01-30
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Refined structure and solvent network of chicken gizzard G-actin DNase 1 complex at 1.8A resolution
Acta Crystallogr.,Sect.A, 49, 1993
1RY0
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BU of 1ry0 by Molmil
Structure of prostaglandin F synthase with prostaglandin D2
Descriptor: Aldo-keto reductase family 1 member C3, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROSTAGLANDIN D2
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
5IAU
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BU of 5iau by Molmil
A C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, Dipeptidase
Authors:Kono, R, Watanabe, K.
Deposit date:2016-02-21
Release date:2017-03-01
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.781 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5INR
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BU of 5inr by Molmil
A C69-family cysteine dipeptidase in complex with Ala-Pro from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, ALANINE, ...
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-07
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.652 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5IB9
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BU of 5ib9 by Molmil
Crystal structure of aminopeptidase equipped with PAD from Aneurinibacillus sp. AM-1
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ZINC ION
Authors:Tagawa, R, Nakano, H, Watanabe, K.
Deposit date:2016-02-22
Release date:2017-02-22
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of aminopeptidase
To Be Published
5IMH
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BU of 5imh by Molmil
D31P mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, COBALT (II) ION, ...
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-06
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.471 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5IMG
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BU of 5img by Molmil
C9A mutant of C69-family cysteine dipeptidase from Lactobacillus farciminis
Descriptor: COBALT (II) ION, Dipeptidase, GLYCEROL
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-06
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.844 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
5INX
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BU of 5inx by Molmil
A C69-family cysteine dipeptidase in complex with Met and Ala from Lactobacillus farciminis
Descriptor: ALANINE, Dipeptidase, METHIONINE
Authors:Kono, R, Watanabe, K.
Deposit date:2016-03-08
Release date:2017-03-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.681 Å)
Cite:A C69-family cysteine dipeptidase from Lactobacillus farciminis; substrate recognition mechanism and autoproteolytic mechanism in enzyme maturation
To Be Published
6KJG
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BU of 6kjg by Molmil
Crystal structure of PsoF
Descriptor: Dual-functional monooxygenase/methyltransferase psoF
Authors:Hara, K, Hashimoto, H, Matsushita, T, Tsunematsu, Y, Watanabe, K.
Deposit date:2019-07-22
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analyses oftrans C-Methyltransferase in Fungal Polyketide Biosynthesis.
Biochemistry, 58, 2019
6KJI
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BU of 6kji by Molmil
Crystal structure of PsoF with SAH
Descriptor: Dual-functional monooxygenase/methyltransferase psoF, S-ADENOSYL-L-HOMOCYSTEINE, SULFATE ION
Authors:Hara, K, Hashimoto, H, Matsushita, T, Tsunematsu, Y, Watanabe, K.
Deposit date:2019-07-22
Release date:2019-09-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional and Structural Analyses oftrans C-Methyltransferase in Fungal Polyketide Biosynthesis.
Biochemistry, 58, 2019
1RY8
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BU of 1ry8 by Molmil
Prostaglandin F synthase complexed with NADPH and rutin
Descriptor: Aldo-keto reductase family 1 member C3, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, RUTIN
Authors:Komoto, J, Yamada, T, Watanabe, K, Takusagawa, F.
Deposit date:2003-12-19
Release date:2004-11-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structure of human prostaglandin F synthase (AKR1C3).
Biochemistry, 43, 2004
4PDT
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BU of 4pdt by Molmil
Japanese Marasmius oreades lectin
Descriptor: Mannose recognizing lectin, SULFATE ION
Authors:Noma, Y, Shimokawa, M, Maeganeku, C, Motoshima, H, Watanabe, K, Minami, Y, Yagi, F.
Deposit date:2014-04-22
Release date:2015-04-29
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:The structure of Japanese Marasmius oreades lectin at 1.40 Angstroms resolution.
To Be Published
1HZE
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BU of 1hze by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOFLAVIN SYNTHASE FROM E. COLI
Descriptor: RIBOFLAVIN, RIBOFLAVIN SYNTHASE ALPHA CHAIN
Authors:Truffault, V, Coles, M, Diercks, T, Abelmann, K, Eberhardt, S, Luettgen, H, Bacher, A, Kessler, H.
Deposit date:2001-01-24
Release date:2001-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution structure of the N-terminal domain of riboflavin synthase.
J.Mol.Biol., 309, 2001
1WVM
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BU of 1wvm by Molmil
Crystal Structure of Psychrophilic Subtilisin-like Serine Protease APA1 from Antarctic Psychrotroph Pseudoaleromonas sp. AS-11, Complexed with Inhibitor Chymostatin
Descriptor: CALCIUM ION, CHYMOSTATIN, MAGNESIUM ION, ...
Authors:Dong, D, Watanabe, K.
Deposit date:2004-12-16
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.16 nm resolution
To be Published
1J1T
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BU of 1j1t by Molmil
Alginate lyase from Alteromonas sp.272
Descriptor: Alginate Lyase, CALCIUM ION, SULFATE ION
Authors:Motoshima, H, Iwatomo, Y, Watanabe, K, Oda, T, Muramatsu, T.
Deposit date:2002-12-14
Release date:2004-02-03
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of Alginate Lyase from Alteromonas sp.272
To be published
1I18
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BU of 1i18 by Molmil
SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF RIBOFLAVIN SYNTHASE FROM E. COLI
Descriptor: RIBOFLAVIN, RIBOFLAVIN SYNTHASE ALPHA CHAIN
Authors:Truffault, V, Coles, M, Diercks, T, Abelmann, K, Eberhardt, S, Luettgen, H, Bacher, A, Kessler, H.
Deposit date:2001-01-31
Release date:2001-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The solution structure of the N-terminal domain of riboflavin synthase.
J.Mol.Biol., 309, 2001
1Y9Z
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BU of 1y9z by Molmil
Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, SODIUM ION, ...
Authors:Dong, D, Watanabe, K.
Deposit date:2004-12-16
Release date:2006-03-21
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.14 nm resolution
To be Published
2EK9
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BU of 2ek9 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1 with Bestatin
Descriptor: 2-(3-AMINO-2-HYDROXY-4-PHENYL-BUTYRYLAMINO)-4-METHYL-PENTANOIC ACID, Aminopeptidase, ISOPROPYL ALCOHOL, ...
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
2EK8
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BU of 2ek8 by Molmil
Aminopeptidase from Aneurinibacillus sp. strain AM-1
Descriptor: Aminopeptidase, ISOPROPYL ALCOHOL, ZINC ION
Authors:Akioka, M, Nakano, H, Watanabe, K.
Deposit date:2007-03-22
Release date:2008-03-25
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural characterization of a novel bacterial aminopeptidase with an apical domain from aneurinibacillus sp. strain AM-1
To be published
7FAO
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BU of 7fao by Molmil
Top7 surface mutant K42A Q43A K46A K57S K58S, and I68R
Descriptor: MAGNESIUM ION, Top7 Surface mutant
Authors:Ito, Y, Makabe, K.
Deposit date:2021-07-07
Release date:2022-05-18
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Surface Engineering of Top7 to Facilitate Structure Determination.
Int J Mol Sci, 23, 2022
7FDD
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BU of 7fdd by Molmil
A Crystal structure of OspA mutant
Descriptor: DI(HYDROXYETHYL)ETHER, Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2021-07-16
Release date:2022-07-20
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:beta-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J.Mol.Biol., 436, 2024
7FJR
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BU of 7fjr by Molmil
Structure of a mutant of OspA
Descriptor: DI(HYDROXYETHYL)ETHER, Outer surface protein A
Authors:Shiga, S, Makabe, K.
Deposit date:2021-08-04
Release date:2022-08-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:beta-Strand-mediated Domain-swapping in the Absence of Hydrophobic Core Repacking.
J.Mol.Biol., 436, 2024

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