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7EAQ
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BU of 7eaq by Molmil
DNA quadruplex composed of i-motif and Z-DNA
Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*CP*CP*TP*CP*GP*CP*G)-3')
Authors:Kondo, J, Igarashi, Y.
Deposit date:2021-03-08
Release date:2022-03-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.39 Å)
Cite:DNA quadruplex composed of i-motif and Z-DNA
To Be Published
7EAY
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BU of 7eay by Molmil
DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
Descriptor: COBALT (II) ION, COBALT HEXAMMINE(III), COPPER (II) ION, ...
Authors:Kondo, J, Terashima, A, Yoshimura, A, Tada, Y, Ono, A.
Deposit date:2021-03-08
Release date:2022-03-09
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
To Be Published
7ECO
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BU of 7eco by Molmil
RNA duplex containing U-Ag-U base pairs
Descriptor: RNA (5'-R(*GP*GP*GP*UP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION
Authors:Kondo, J, Tsudura, A.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:RNA duplex containing U-Ag-U base pairs
To Be Published
7ECN
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BU of 7ecn by Molmil
RNA duplex containing C-Ag-A base pairs
Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3'), SILVER ION
Authors:Kondo, J, Tsudura, A.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:RNA duplex containing C-Ag-A base pairs
To Be Published
7EDL
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BU of 7edl by Molmil
Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)
Descriptor: GENETICIN, MERCURY (II) ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
Authors:Kondo, J, Suzuki, C.
Deposit date:2021-03-16
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the prokaryotic ribosomal decoding site in complex with G418 and Hg(II)
To Be Published
7EDM
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BU of 7edm by Molmil
Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
Descriptor: GENETICIN, MERCURY (II) ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
Authors:Kondo, J, Suzuki, C.
Deposit date:2021-03-16
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
To Be Published
7ECP
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BU of 7ecp by Molmil
RNA duplex containing C-Ag-U
Descriptor: RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION
Authors:Kondo, J, Tsudura, A.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:RNA duplex containing C-Ag-U
To Be Published
7EDN
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BU of 7edn by Molmil
Crystal structure of the eukaryotic decoding site in complex with Ag(I)
Descriptor: CALCIUM ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), SILVER ION
Authors:Kondo, J, Suzuki, C.
Deposit date:2021-03-16
Release date:2022-03-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the eukaryotic decoding site in complex with Ag(I)
To Be Published
7ECK
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BU of 7eck by Molmil
RNA duplex containing C-Ag-A and U-Ag-A base pairs
Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
Authors:Kondo, J, Uchida, Y.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:RNA duplex containing C-Ag-A and U-Ag-A base pairs
To Be Published
7ECM
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BU of 7ecm by Molmil
RNA duplex containing C-A base pair
Descriptor: BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3')
Authors:Kondo, J, Tsudura, A.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:RNA duplex containing C-A base pair
To Be Published
7EEO
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BU of 7eeo by Molmil
Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
Descriptor: COBALT HEXAMMINE(III), DNA/RNA (27-MER)
Authors:Kondo, J, Sekiguchi, S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.701 Å)
Cite:Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7ECJ
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BU of 7ecj by Molmil
RNA duplex containing C-A base pairs
Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')
Authors:Kondo, J, Uchida, Y.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:RNA duplex containing C-A base pairs
To Be Published
7EDV
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BU of 7edv by Molmil
DNA duplex containing C-G-Au-C base triple
Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*CP*CP*GP*GP*TP*CP*C)-3'), GOLD ION
Authors:Kondo, J, Iwase, E.
Deposit date:2021-03-17
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:DNA duplex containing C-G-Au-C base triple
To Be Published
7ECL
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BU of 7ecl by Molmil
RNA duplex containing C-Ag-A and U-Ag-A base pair
Descriptor: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
Authors:Kondo, J, Uchida, Y.
Deposit date:2021-03-12
Release date:2022-03-16
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:RNA duplex containing C-Ag-A and U-Ag-A base pair
To Be Published
7EDT
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BU of 7edt by Molmil
RNA duplex containing CC mispairs
Descriptor: RNA (5'-R(*GP*GP*AP*CP*UP*CP*CP*GP*GP*(5BU)P*CP*C)-3'), SODIUM ION, SPERMINE
Authors:Kondo, J, Tada, Y.
Deposit date:2021-03-17
Release date:2022-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:RNA duplex containing CC mispairs
To Be Published
7EEM
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BU of 7eem by Molmil
RNA bulged-G motif
Descriptor: IRIDIUM ION, RNA (27-MER)
Authors:Kondo, J, Sekiguchi, S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.593 Å)
Cite:RNA bulged-G motif
To Be Published
7EDU
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BU of 7edu by Molmil
RNA duplex containing C-Au-C base pair
Descriptor: GOLD ION, RNA (5'-R(*GP*GP*AP*CP*UP*CP*GP*AP*CP*UP*CP*C)-3')
Authors:Kondo, J, Iwase, E.
Deposit date:2021-03-17
Release date:2022-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:RNA duplex containing C-Au-C base pair
To Be Published
7EFI
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BU of 7efi by Molmil
RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
Descriptor: DNA/RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*(OMG)P*(OMG)P*(OMG))-D(P*GP*A)-R(P*GP*(OMC)P*(OMC))-3')
Authors:Kondo, J, Nagashima, M.
Deposit date:2021-03-21
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:RNA kink-turn motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7EDW
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BU of 7edw by Molmil
DNA duplex containing T-T base pairs in complex with Au(III)
Descriptor: DNA (5'-D(*GP*GP*AP*CP*CP*TP*TP*GP*GP*TP*CP*C)-3'), GOLD ION
Authors:Kondo, J, Iwase, E.
Deposit date:2021-03-17
Release date:2022-03-23
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:DNA duplex containing T-T base pairs in complex with Au(III)
To Be Published
7EEN
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BU of 7een by Molmil
Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
Descriptor: CALCIUM ION, DNA/RNA (27-MER)
Authors:Kondo, J, Sekiguchi, S.
Deposit date:2021-03-19
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7EI5
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BU of 7ei5 by Molmil
GNRA tetraloop receptor motif composed of RNA and DNA
Descriptor: COBALT (II) ION, DNA/RNA (35-MER), STRONTIUM ION
Authors:Kondo, J, Hayasaka, A.
Deposit date:2021-03-30
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:RNA GNRA tetraloop and tetraloop receptor motifs
To Be Published
7EFH
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BU of 7efh by Molmil
RNA kink-turn motif
Descriptor: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Kondo, J, Nagashima, M.
Deposit date:2021-03-21
Release date:2022-03-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:RNA kink-turn motif
To Be Published
7EI9
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BU of 7ei9 by Molmil
RNA kink-turn motif with pyrrolo cytosine
Descriptor: RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(4PC))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3'), STRONTIUM ION
Authors:Kondo, J, Miyauchi, T.
Deposit date:2021-03-30
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:RNA kink-turn motif with pyrrolo cytosine
To Be Published
7EI7
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BU of 7ei7 by Molmil
RNA kink-turn motif with 2-aminopurine
Descriptor: COBALT (II) ION, RNA (5'-R(*GP*GP*CP*GP*A)-D(P*(2PR))-R(P*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
Authors:Kondo, J, Saisu, S.
Deposit date:2021-03-30
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:RNA kink-turn motif with 2-aminopurine
To Be Published
7EI6
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BU of 7ei6 by Molmil
GNRA tetraloop receptor motif composed of RNA and DNA
Descriptor: DNA/RNA (35-MER), IRIDIUM (III) ION
Authors:Kondo, J, Hayasaka, A.
Deposit date:2021-03-30
Release date:2022-03-30
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:RNA GNRA tetraloop and tetraloop receptor motifs
To Be Published

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PDB entries from 2024-07-24

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