Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4ODK
DownloadVisualize
BU of 4odk by Molmil
Structure of SlyD from Thermus thermophilus in complex with T1 peptide
Descriptor: CHLORIDE ION, Guanyl-specific ribonuclease T1, Peptidyl-prolyl cis-trans isomerase SlyD
Authors:Quistgaard, E.M, Low, C, Nordlund, P.
Deposit date:2014-01-10
Release date:2015-01-14
Last modified:2017-10-04
Method:X-RAY DIFFRACTION (1.401 Å)
Cite:Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.
BMC Biol., 14, 2016
4ODR
DownloadVisualize
BU of 4odr by Molmil
Structure of SlyD delta-IF from Thermus thermophilus in complex with FK506
Descriptor: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, ACETATE ION, CHLORIDE ION, ...
Authors:Quistgaard, E.M, Low, C, Nordlund, P.
Deposit date:2014-01-10
Release date:2015-01-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.929 Å)
Cite:Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD.
BMC Biol., 14, 2016
4JA3
DownloadVisualize
BU of 4ja3 by Molmil
Partially occluded inward open conformation of the xylose transporter XylE from E. coli
Descriptor: CADMIUM ION, D-xylose-proton symporter, LUTETIUM (III) ION
Authors:Quistgaard, E.M, Low, C, Moberg, P, Tresaugues, L, Nordlund, P.
Deposit date:2013-02-18
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters.
Nat.Struct.Mol.Biol., 20, 2013
4JA4
DownloadVisualize
BU of 4ja4 by Molmil
Inward open conformation of the xylose transporter XylE from E. coli
Descriptor: CADMIUM ION, D-xylose-proton symporter
Authors:Quistgaard, E.M, Low, C, Moberg, P, Tresaugues, L, Nordlund, P.
Deposit date:2013-02-18
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Structural basis for substrate transport in the GLUT-homology family of monosaccharide transporters.
Nat.Struct.Mol.Biol., 20, 2013
8CGC
DownloadVisualize
BU of 8cgc by Molmil
Structure of CSF1R in complex with a pyrollopyrimidine (compound 23)
Descriptor: (2S)-2-hydroxybutanedioic acid, GLYCEROL, Macrophage colony-stimulating factor 1 receptor, ...
Authors:Aarhus, T.I, Bjornstad, F, Wolowczyk, C, Larsen, K.U, Rognstad, L, Leithaug, T, Unger, A, Habenberger, P, Wolff, A, Bjorkoy, G, Pridans, C, Eickhoff, J, Klebl, B, Hoff, B.H, Sundby, E.
Deposit date:2023-02-03
Release date:2023-05-24
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.925 Å)
Cite:Synthesis and Development of Highly Selective Pyrrolo[2,3- d ]pyrimidine CSF1R Inhibitors Targeting the Autoinhibited Form.
J.Med.Chem., 66, 2023
5MHQ
DownloadVisualize
BU of 5mhq by Molmil
CCT068127 in complex with CDK2
Descriptor: (2~{R},3~{S})-3-[[9-propan-2-yl-6-(pyridin-3-ylmethylamino)purin-2-yl]amino]pentan-2-ol, Cyclin-dependent kinase 2
Authors:Whittaker, S.R, Barlow, C, Martin, M.P, Mancusi, C, Wagner, S, Barrie, E, te Poele, R, Sharp, S, Brown, N, Wilson, S, Clarke, P, Walton, M.I, MacDonald, E, Blagg, J, Noble, M.E.M, Garrett, M.D, Workman, P.
Deposit date:2016-11-25
Release date:2017-12-20
Last modified:2018-03-14
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Molecular profiling and combinatorial activity of CCT068127: a potent CDK2 and CDK9 inhibitor.
Mol Oncol, 12, 2018
1N03
DownloadVisualize
BU of 1n03 by Molmil
Model for Active RecA Filament
Descriptor: ADENOSINE-5'-DIPHOSPHATE, RecA protein
Authors:VanLoock, M.S, Yu, X, Yang, S, Lai, A.L, Low, C, Campbell, M.J, Egelman, E.H.
Deposit date:2002-10-10
Release date:2003-02-25
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (20 Å)
Cite:ATP-Mediated Conformational Changes in the RecA Filament
Structure, 11, 2003
6V1V
DownloadVisualize
BU of 6v1v by Molmil
VIP3B (VIP3B_2160) adapted for crystallization
Descriptor: Vegetative insecticidal protein
Authors:Evdokimov, A.G, Zheng, M, Moshiri, F, Haas, J, Lowder, C.
Deposit date:2019-11-21
Release date:2019-12-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (3.189 Å)
Cite:Crystal structure of a Vip3B family insecticidal protein reveals a new fold and a unique tetrameric assembly.
Protein Sci., 29, 2020
3KVS
DownloadVisualize
BU of 3kvs by Molmil
The high resolution structure of C-Phycocyanin from Galdieria Sulphuraria
Descriptor: BILIVERDINE IX ALPHA, C-phycocyanin alpha chain, C-phycocyanin beta chain
Authors:Fromme, R, Thangaraj, B, Vanselow, C, Fromme, P.
Deposit date:2009-11-30
Release date:2011-04-13
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:High resolution structure of C-Phycocyanin from Galdieria sulphuraria reveals new insights of the Phycobilisome
To be Published
2BPQ
DownloadVisualize
BU of 2bpq by Molmil
Anthranilate phosphoribosyltransferase (TrpD) from Mycobacterium tuberculosis (Apo structure)
Descriptor: ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, BENZAMIDINE, GLYCEROL
Authors:Lee, C.E, Goodfellow, C, Javid-Majd, F, Baker, E.N, Lott, J.S, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-04-22
Release date:2006-01-04
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of Trpd, a Metabolic Enzyme Essential for Lung Colonization by Mycobacterium Tuberculosis, in Complex with its Substrate Phosphoribosylpyrophosphate
J.Mol.Biol., 355, 2006
1ZVW
DownloadVisualize
BU of 1zvw by Molmil
The Crystal Structure of TrpD (Rv2192c) from Mycobacterium tuberculosis in Complex with PRPP and Magnesium
Descriptor: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, Anthranilate phosphoribosyltransferase, BENZAMIDINE, ...
Authors:Lee, C.E, Lott, J.S, Baker, E.N, Arcus, V.L, Javid-Majd, F, Goodfellow, C, Hung, L.-W, TB Structural Genomics Consortium (TBSGC)
Deposit date:2005-06-02
Release date:2006-01-17
Last modified:2021-08-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of TrpD, a Metabolic Enzyme Essential for Lung Colonization by Mycobacterium tuberculosis, in Complex with its Substrate Phosphoribosylpyrophosphate.
J.Mol.Biol., 355, 2006
4NY3
DownloadVisualize
BU of 4ny3 by Molmil
Human PTPA in complex with peptide
Descriptor: GLYCEROL, SULFATE ION, Serine/threonine-protein phosphatase 2A activator, ...
Authors:Loew, C, Quistgaard, E.M, Nordlund, P.
Deposit date:2013-12-10
Release date:2014-07-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Structural basis for PTPA interaction with the invariant C-terminal tail of PP2A.
Biol.Chem., 395, 2014
2RND
DownloadVisualize
BU of 2rnd by Molmil
Structure of the N-terminal BARpeptide in DPC micelles
Descriptor: Myc box-dependent-interacting protein 1
Authors:Loew, C, Weininger, U, Balbach, J.
Deposit date:2007-12-16
Release date:2008-10-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure and dynamics of helix-0 of the N-BAR domain in lipid micelles and bilayers
Biophys.J., 95, 2008
2RMY
DownloadVisualize
BU of 2rmy by Molmil
Structure of the N-terminal BARpeptide in SDS micelles
Descriptor: Myc box-dependent-interacting protein 1
Authors:Loew, C, Weininger, U, Balbach, J.
Deposit date:2007-12-03
Release date:2008-10-14
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Structure and dynamics of helix-0 of the N-BAR domain in lipid micelles and bilayers
Biophys.J., 95, 2008
7PMY
DownloadVisualize
BU of 7pmy by Molmil
HsPepT2 bound to Ala-Phe in the inward facing partially occluded conformation
Descriptor: ALA-PHE, Solute carrier family 15 member 2
Authors:Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C.
Deposit date:2021-09-04
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes.
Sci Adv, 7, 2021
7PN1
DownloadVisualize
BU of 7pn1 by Molmil
Apo HsPepT1 in the outward facing open conformation
Descriptor: Solute carrier family 15 member 1
Authors:Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C.
Deposit date:2021-09-04
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes.
Sci Adv, 7, 2021
7PMW
DownloadVisualize
BU of 7pmw by Molmil
HsPepT1 bound to Ala-Phe in the outward facing occluded conformation
Descriptor: ALA-PHE, Solute carrier family 15 member 1
Authors:Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C.
Deposit date:2021-09-03
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes.
Sci Adv, 7, 2021
7PMX
DownloadVisualize
BU of 7pmx by Molmil
HsPepT1 bound to Ala-Phe in the outward facing open conformation
Descriptor: ALA-PHE, Solute carrier family 15 member 1
Authors:Killer, M, Wald, J, Pieprzyk, J, Marlovits, T.C, Loew, C.
Deposit date:2021-09-03
Release date:2021-10-20
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural snapshots of human PepT1 and PepT2 reveal mechanistic insights into substrate and drug transport across epithelial membranes.
Sci Adv, 7, 2021
7A25
DownloadVisualize
BU of 7a25 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
Authors:Hallberg, B.M, Das, H.
Deposit date:2020-08-16
Release date:2020-11-25
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Selection, biophysical and structural analysis of synthetic nanobodies that effectively neutralize SARS-CoV-2.
Nat Commun, 11, 2020
7ZC2
DownloadVisualize
BU of 7zc2 by Molmil
Dipeptide and tripeptide Permease C (DtpC)
Descriptor: Amino acid/peptide transporter
Authors:Killer, M, Finocchio, G, Pardon, E, Steyaert, J, Loew, C.
Deposit date:2022-03-25
Release date:2022-07-06
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.72 Å)
Cite:Cryo-EM Structure of an Atypical Proton-Coupled Peptide Transporter: Di- and Tripeptide Permease C.
Front Mol Biosci, 9, 2022
8R8Q
DownloadVisualize
BU of 8r8q by Molmil
Lysosomal peptide transporter
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Glycosylated lysosomal membrane protein, Major facilitator superfamily domain-containing protein 1
Authors:Jungnickel, K.E.J, Loew, C.
Deposit date:2023-11-29
Release date:2024-05-01
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (4.08 Å)
Cite:MFSD1 with its accessory subunit GLMP functions as a general dipeptide uniporter in lysosomes.
Nat.Cell Biol., 26, 2024
8CNI
DownloadVisualize
BU of 8cni by Molmil
PHT1 in the outward facing conformation, bound to Sb27
Descriptor: Solute carrier family 15 member 4, Sybody 27
Authors:Custodio, T, Killer, M, Loew, C.
Deposit date:2023-02-23
Release date:2023-09-27
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.35 Å)
Cite:Molecular basis of TASL recruitment by the peptide/histidine transporter 1, PHT1.
Nat Commun, 14, 2023
7A29
DownloadVisualize
BU of 7a29 by Molmil
Cryo-EM structure of the SARS-CoV-2 spike protein bound to neutralizing sybodies (Sb23) 2-up conformation
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Neutralising sybody (Sb23), ...
Authors:Hallberg, B.M, Das, H.
Deposit date:2020-08-16
Release date:2020-10-21
Last modified:2020-11-18
Method:ELECTRON MICROSCOPY (2.94 Å)
Cite:Selection, biophysical and structural analysis of synthetic nanobodies that effectively neutralize SARS-CoV-2.
Nat Commun, 11, 2020
6ZN3
DownloadVisualize
BU of 6zn3 by Molmil
Plasmodium facliparum glideosome trimeric sub-complex
Descriptor: Myosin A tail domain interacting protein, Myosin essential light chain ELC, Myosin-A
Authors:Pazicky, S, Loew, C.
Deposit date:2020-07-06
Release date:2020-10-21
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural role of essential light chains in the apicomplexan glideosome.
Commun Biol, 3, 2020
7OXI
DownloadVisualize
BU of 7oxi by Molmil
ttSlyD with W4A pseudo-wild-type S2 peptide
Descriptor: 30S ribosomal protein S2, CHLORIDE ION, Peptidyl-prolyl cis-trans isomerase
Authors:Pazicky, S, Lei, J, Loew, C.
Deposit date:2021-06-22
Release date:2022-03-16
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Impact of distant peptide substrate residues on enzymatic activity of SlyD.
Cell.Mol.Life Sci., 79, 2022

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon