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8WM2
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BU of 8wm2 by Molmil
Crystal structure of AbmM
Descriptor: Fe-S radical SAM, IRON/SULFUR CLUSTER, SULFATE ION
Authors:Ushimaru, R, Mori, T, Abe, I, Liu, H.-w.
Deposit date:2023-10-02
Release date:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of AbmM
To Be Published
8J5E
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BU of 8j5e by Molmil
Crystal structure of kinase AbmG in complex with 4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-thiocytidine
To Be Published
8J5F
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BU of 8j5f by Molmil
Crystal structure of kinase AbmG in complex with cytidine and ADP
Descriptor: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE, ADENOSINE-5'-DIPHOSPHATE, Deoxyadenosine/deoxycytidine kinase
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of kinase AbmG in complex with cytidine and ADP
To Be Published
8J5G
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BU of 8j5g by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
Descriptor: Deoxyadenosine/deoxycytidine kinase, [(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-2-(hydroxymethyl)-3,4-bis(oxidanyl)thiolan-2-yl] phosphono hydrogen phosphate
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine 5'-diphosphate
To Be Published
8J5H
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BU of 8j5h by Molmil
Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
Descriptor: 4-azanyl-1-[(2~{R},3~{R},4~{S},5~{S})-5-(hydroxymethyl)-3,4,5-tris(oxidanyl)thiolan-2-yl]pyrimidin-2-one, Deoxyadenosine/deoxycytidine kinase, NITRATE ION
Authors:Ushimaru, R, Mori, T, Liu, H.-w, Abe, I.
Deposit date:2023-04-22
Release date:2024-04-24
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal structure of kinase AbmG in complex with 4'-hydroxy-4'-thiocytidine
To Be Published
8JMR
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BU of 8jmr by Molmil
Crystal structure of hinokiresinol synthase in complex with 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one
Descriptor: 1,7-bis(4-hydroxyphenyl)hepta-1,6-dien-3-one, Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit, ...
Authors:Ding, Y, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2023-12-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
8JMQ
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BU of 8jmq by Molmil
Crystal structure of hinokiresinol synthase
Descriptor: Hinokiresinol synthase alpha subunit, Hinokiresinol synthase beta subunit
Authors:Ding, Y, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2023-12-20
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Mechanistic Insights into the C-C Bond-Forming Rearrangement Reaction Catalyzed by Heterodimeric Hinokiresinol Synthase.
J.Am.Chem.Soc., 145, 2023
8JMS
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BU of 8jms by Molmil
Crystal structure of BelL from Streptomyces cavourensis
Descriptor: BsmA domain containing protein
Authors:Shimo, S, Ushimaru, R, Mori, T, Abe, I.
Deposit date:2023-06-05
Release date:2024-06-05
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of BelL
To Be Published
7DE2
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BU of 7de2 by Molmil
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI
Descriptor: 2-OXOGLUTARIC ACID, FE (III) ION, NvfI, ...
Authors:Zhai, R, Mori, T, Abe, I.
Deposit date:2020-11-01
Release date:2021-07-14
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Nat Commun, 12, 2021
7ENB
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BU of 7enb by Molmil
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI with different conformation
Descriptor: FE (III) ION, N-OXALYLGLYCINE, NvfI, ...
Authors:Mori, T, Abe, I.
Deposit date:2021-04-16
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Nat Commun, 12, 2021
7EMZ
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BU of 7emz by Molmil
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI W199F variant
Descriptor: FE (III) ION, N-OXALYLGLYCINE, NvfI W199F, ...
Authors:Mori, T, Abe, I.
Deposit date:2021-04-15
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Nat Commun, 12, 2021

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數據於2024-11-06公開中

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