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6KPO
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BU of 6kpo by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine-Asn
Descriptor: ASPARAGINE, Chitinase, DI(HYDROXYETHYL)ETHER, ...
Authors:Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
Deposit date:2019-08-15
Release date:2019-10-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPN
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BU of 6kpn by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris D154N/E156Q mutant in complex with fucosyl-N-acetylglucosamine
Descriptor: Chitinase, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
Deposit date:2019-08-15
Release date:2019-10-02
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPM
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BU of 6kpm by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in complex with L-fucose
Descriptor: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, ...
Authors:Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
Deposit date:2019-08-15
Release date:2019-10-02
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
6KPL
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BU of 6kpl by Molmil
Crystal Structure of endo-beta-N-acetylglucosaminidase from Cordyceps militaris in apo form
Descriptor: Chitinase, DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL
Authors:Seki, H, Arakawa, T, Yamada, C, Takegawa, K, Fushinobu, S.
Deposit date:2019-08-15
Release date:2019-10-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural basis for the specific cleavage of core-fucosylatedN-glycans by endo-beta-N-acetylglucosaminidase from the fungusCordyceps militaris.
J.Biol.Chem., 294, 2019
1G3D
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BU of 1g3d by Molmil
BOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF BASE COPPER (II) CHELATE
Descriptor: 2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
Authors:Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
Deposit date:2000-10-23
Release date:2001-01-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3B
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BU of 1g3b by Molmil
BOVINE BETA-TRYPSIN BOUND TO META-AMIDINO SCHIFF BASE MAGNESIUM(II) CHELATE
Descriptor: 2-(5-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
Authors:Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
Deposit date:2000-10-23
Release date:2001-01-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3C
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BU of 1g3c by Molmil
BOVINE BETA-TRYPSIN BOUND TO PARA-AMIDINO SCHIFF BASE IRON(III) CHELATE
Descriptor: 2-(4-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
Authors:Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
Deposit date:2000-10-23
Release date:2001-01-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
1G3E
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BU of 1g3e by Molmil
BOVINE BETA-TRYPSIN BOUND TO PARA-AMIDINO SCHIFF-BASE COPPER (II) CHELATE
Descriptor: 2-(4-CARBAMIMIDOYL-2-HYDROXY-BENZYLAMINO)-PROPIONIC ACID, BETA-TRYPSIN, CALCIUM ION, ...
Authors:Toyota, E, Ng, K.K.S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
Deposit date:2000-10-23
Release date:2001-01-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray crystallographic analyses of complexes between bovine beta-trypsin and Schiff base copper(II) or iron(III) chelates.
J.Mol.Biol., 305, 2001
5WQW
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BU of 5wqw by Molmil
X-ray structure of catalytic domain of autolysin from Clostridium perfringens
Descriptor: 1,2-ETHANEDIOL, N-acetylglucosaminidase
Authors:Tamai, E, Sekiya, H, Goda, E, Makihata, N, Maki, J, Yoshida, H, Kamitori, S.
Deposit date:2016-11-29
Release date:2016-12-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Structural and biochemical characterization of the Clostridium perfringens autolysin catalytic domain
FEBS Lett., 591, 2017
1MBQ
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BU of 1mbq by Molmil
Anionic Trypsin from Pacific Chum Salmon
Descriptor: BENZAMIDINE, CALCIUM ION, Trypsin
Authors:Toyota, E, Ng, K.K.S, Kuninaga, S, Sekizaki, H, Itoh, K, Tanizawa, K, James, M.N.G.
Deposit date:2002-08-03
Release date:2002-12-11
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structure and Nucleotide Sequence of an Anionic Trypsin from Chum Salmon (Oncorhynchus keta) in Comparison with Atlantic Salmon (Salmo salar) and Bovine Trypsin
J.Mol.Biol., 324, 2002
2EQJ
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BU of 2eqj by Molmil
Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
Descriptor: Metal-response element-binding transcription factor 2
Authors:Dang, W, Muto, Y, Isono, K, Watanabe, S, Tarada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TUDOR domain of Metal-response element-binding transcription factor 2
To be Published
2YT5
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BU of 2yt5 by Molmil
Solution structure of the PHD domain of Metal-response element-binding transcription factor 2
Descriptor: Metal-response element-binding transcription factor 2, ZINC ION
Authors:Masuda, K, Muto, Y, Isono, K, Watanabe, S, Harada, T, Kigawa, T, Koseki, H, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PHD domain of Metal-response element-binding transcription factor 2
To be Published
7F5I
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BU of 7f5i by Molmil
X-ray structure of Clostridium perfringens-specific amidase endolysin
Descriptor: GLUTAMIC ACID, SODIUM ION, ZINC ION, ...
Authors:Kamitori, S, Tamai, E.
Deposit date:2021-06-22
Release date:2022-05-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structural and biochemical characterization of the Clostridium perfringens-specific Zn 2+ -dependent amidase endolysin, Psa, catalytic domain.
Biochem.Biophys.Res.Commun., 576, 2021
8YXK
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BU of 8yxk by Molmil
X-ray structure of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Descriptor: Phage cell wall hydrolase
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
8YXN
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BU of 8yxn by Molmil
X-ray structure of Clostridium perfringens autolysin catalytic domain in the P1 form
Descriptor: Cell surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2024-04-02
Release date:2024-05-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:X-ray structure and mutagenesis analyses of Clostridioides difficile endolysin Ecd09610 glucosaminidase domain.
Biochem.Biophys.Res.Commun., 715, 2024
7CFL
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BU of 7cfl by Molmil
X-ray structure of autolysin Acd24020 catalytic domain from Clostridium difficile
Descriptor: CITRATE ANION, Putative cell wall hydrolase phosphatase-associated protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-06-26
Release date:2020-11-25
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Structural and biochemical characterizations of the novel autolysin Acd24020 from Clostridioides difficile and its full-function catalytic domain as a lytic enzyme.
Mol.Microbiol., 115, 2021
7BGF
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BU of 7bgf by Molmil
CRYSTAL STRUCTURE OF THE N-TERMINAL DIMERIC COILED COIL OF THE HUMAN CTIP PROTEIN
Descriptor: DNA endonuclease RBBP8,CtIP/RBBP8
Authors:Morton, C.R, Pellegrini, L.
Deposit date:2021-01-07
Release date:2021-06-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.802 Å)
Cite:Structural basis for the coiled-coil architecture of human CtIP.
Open Biology, 11, 2021
4KRU
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BU of 4kru by Molmil
X-ray structure of catalytic domain of endolysin from clostridium perfringens phage phiSM101
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
4KRT
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BU of 4krt by Molmil
X-ray structure of endolysin from clostridium perfringens phage phiSM101
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, Autolytic lysozyme, ...
Authors:Kamitori, S, Yoshida, H.
Deposit date:2013-05-17
Release date:2014-04-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:X-ray structure of a novel endolysin encoded by episomal phage phiSM101 of Clostridium perfringens.
Mol.Microbiol., 92, 2014
5B23
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BU of 5b23 by Molmil
X-ray Structure of Clostridium Perfringens Sortase B
Descriptor: Uncharacterized protein Sortase B
Authors:Kamitori, S, Yoshida, H, Tamai, E.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017
6IXZ
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BU of 6ixz by Molmil
X-ray structure of sortase C from Clostridium perfringens SM101
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXY
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BU of 6ixy by Molmil
X-ray structure of major pilin from C. perfringens SM101
Descriptor: pilin
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
7XI9
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BU of 7xi9 by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022
7XIB
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BU of 7xib by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022
5YFK
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BU of 5yfk by Molmil
X-ray structure of a mutant form C232S of Clostridium perfringens sortase B
Descriptor: Uncharacterized protein Sortase B
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-09-21
Release date:2017-10-18
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:X-ray structure of Clostridium perfringens sortase B cysteine transpeptidase
Biochem. Biophys. Res. Commun., 493, 2017

 

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數據於2024-11-13公開中

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