6LHN
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![BU of 6lhn by Molmil](/molmil-images/mine/6lhn) | RLGSGG-AtPRT6 UBR box | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2019-12-09 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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5YSK
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![BU of 5ysk by Molmil](/molmil-images/mine/5ysk) | SdeA mART-C domain EE/AA apo | Descriptor: | Ubiquitinating/deubiquitinating enzyme SdeA | Authors: | Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2017-11-14 | Release date: | 2018-08-29 | Method: | X-RAY DIFFRACTION (2.403 Å) | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila J. Mol. Biol., 430, 2018
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5YSI
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![BU of 5ysi by Molmil](/molmil-images/mine/5ysi) | SdeA mART-C domain EE/AA NCA complex | Descriptor: | NICOTINAMIDE, Ubiquitinating/deubiquitinating enzyme SdeA | Authors: | Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2017-11-14 | Release date: | 2018-08-29 | Method: | X-RAY DIFFRACTION (1.546 Å) | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila J. Mol. Biol., 430, 2018
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5YSJ
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![BU of 5ysj by Molmil](/molmil-images/mine/5ysj) | SdeA mART-C domain WT apo | Descriptor: | Ubiquitinating/deubiquitinating enzyme SdeA | Authors: | Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2017-11-14 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.059 Å) | Cite: | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila J. Mol. Biol., 430, 2018
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7FER
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![BU of 7fer by Molmil](/molmil-images/mine/7fer) | Cryo-EM structure of BsClpP-ADEP1 complex at pH 4.2 | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-07-06 | Last modified: | 2022-07-20 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7FEP
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![BU of 7fep by Molmil](/molmil-images/mine/7fep) | Cryo-EM structure of BsClpP-ADEP1 complex at pH 6.5 | Descriptor: | ADEP1, ATP-dependent Clp protease proteolytic subunit | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-07-06 | Last modified: | 2022-07-20 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7FES
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![BU of 7fes by Molmil](/molmil-images/mine/7fes) | Cryo-EM structure of apo BsClpP at pH 4.2 | Descriptor: | ATP-dependent Clp protease proteolytic subunit | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-07-06 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7FEQ
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![BU of 7feq by Molmil](/molmil-images/mine/7feq) | Cryo-EM structure of apo BsClpP at pH 6.5 | Descriptor: | ATP-dependent Clp protease proteolytic subunit | Authors: | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-07-06 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.2 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7Y6Y
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![BU of 7y6y by Molmil](/molmil-images/mine/7y6y) | RLGSGG-AtPRT6 UBR box (C121) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-06-21 | Release date: | 2023-07-05 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.543 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7Y70
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![BU of 7y70 by Molmil](/molmil-images/mine/7y70) | RLGSGG-AtPRT6 UBR box (P4332) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-06-21 | Release date: | 2023-07-05 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.801 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7Y6W
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![BU of 7y6w by Molmil](/molmil-images/mine/7y6w) | RRGSGG-AtPRT6 UBR box (I222) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-06-21 | Release date: | 2023-07-05 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7Y6X
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![BU of 7y6x by Molmil](/molmil-images/mine/7y6x) | RRGSGG-AtPRT6 UBR box (P32) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-06-21 | Release date: | 2023-07-05 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.196 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7Y6Z
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![BU of 7y6z by Molmil](/molmil-images/mine/7y6z) | RLGSGG-AtPRT6 UBR box (I222) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-06-21 | Release date: | 2023-07-05 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.598 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7XWD
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![BU of 7xwd by Molmil](/molmil-images/mine/7xwd) | Apo-AtPRT6 UBR box | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-05-26 | Release date: | 2023-05-31 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.396 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7XWF
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![BU of 7xwf by Molmil](/molmil-images/mine/7xwf) | RLGSGG-AtPRT6 UBR box (highest resolution) | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-05-26 | Release date: | 2023-05-31 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.451 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7XWG
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![BU of 7xwg by Molmil](/molmil-images/mine/7xwg) | RSGSGG-AtPRT6 UBR box | Descriptor: | E3 ubiquitin-protein ligase PRT6, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-05-26 | Release date: | 2023-05-31 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.832 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7XWE
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![BU of 7xwe by Molmil](/molmil-images/mine/7xwe) | RRGSGG-AtPRT6 UBR box | Descriptor: | E3 ubiquitin-protein ligase PRT6, MAGNESIUM ION, ZINC ION | Authors: | Kim, L, Song, H.K. | Deposit date: | 2022-05-26 | Release date: | 2023-05-31 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.598 Å) | Cite: | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance To Be Published
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7P80
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![BU of 7p80 by Molmil](/molmil-images/mine/7p80) | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state) | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-06-29 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.98 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7P81
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![BU of 7p81 by Molmil](/molmil-images/mine/7p81) | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-06-29 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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6KHZ
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![BU of 6khz by Molmil](/molmil-images/mine/6khz) | p62/SQSTM1 ZZ domain with Gly-peptide | Descriptor: | Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2019-07-16 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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6KGI
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![BU of 6kgi by Molmil](/molmil-images/mine/6kgi) | RLGS-yUbr1 Ubr box | Descriptor: | E3 ubiquitin-protein ligase UBR1, ZINC ION | Authors: | Heo, J, Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2019-07-11 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.04 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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6KGJ
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![BU of 6kgj by Molmil](/molmil-images/mine/6kgj) | M1Q-hNTAQ1 C28S | Descriptor: | Protein N-terminal glutamine amidohydrolase | Authors: | Park, M.R, Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2019-07-11 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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7D34
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![BU of 7d34 by Molmil](/molmil-images/mine/7d34) | AtClpS1-peptide complex | Descriptor: | ACETIC ACID, ALANINE, ATP-dependent Clp protease adapter protein CLPS1, ... | Authors: | Heo, J, Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2020-09-18 | Release date: | 2021-04-28 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.007 Å) | Cite: | Structural basis for the N-degron specificity of ClpS1 from Arabidopsis thaliana. Protein Sci., 30, 2021
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5IZV
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![BU of 5izv by Molmil](/molmil-images/mine/5izv) | Crystal structure of the legionella pneumophila effector protein RavZ - F222 | Descriptor: | Uncharacterized protein RavZ | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | Deposit date: | 2016-03-26 | Release date: | 2016-11-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.814 Å) | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane Autophagy, 13, 2017
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5XAC
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![BU of 5xac by Molmil](/molmil-images/mine/5xac) | CLIR - LC3B | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-03-12 | Release date: | 2017-07-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.701 Å) | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ Biochem. Biophys. Res. Commun., 490, 2017
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