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1MGT
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BU of 1mgt by Molmil
CRYSTAL STRUCTURE OF O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM HYPERTHERMOPHILIC ARCHAEON PYROCOCCUS KODAKARAENSIS STRAIN KOD1
Descriptor: PROTEIN (O6-METHYLGUANINE-DNA METHYLTRANSFERASE), SULFATE ION
Authors:Hashimoto, H, Inoue, T, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
Deposit date:1999-01-12
Release date:2000-01-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Hyperthermostable protein structure maintained by intra and inter-helix ion-pairs in archaeal O6-methylguanine-DNA methyltransferase.
J.Mol.Biol., 292, 1999
1GEH
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BU of 1geh by Molmil
CRYSTAL STRUCTURE OF ARCHAEAL RUBISCO (RIBULOSE 1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE)
Descriptor: RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE, SULFATE ION
Authors:Kitano, K, Maeda, N, Fukui, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2000-11-13
Release date:2001-12-19
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal Structure of a Novel-Type Archaeal Rubisco with Pentagonal Symmetry
Structure, 9, 2001
3KDO
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BU of 3kdo by Molmil
Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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BU of 3kdn by Molmil
Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-10-23
Release date:2010-10-06
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
1WN7
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BU of 1wn7 by Molmil
Crystal structure of archaeal family B DNA polymerase mutant
Descriptor: Family B DNA Polymerase, GLYCEROL, NICKEL (II) ION
Authors:Kuroita, T, Matsumura, H, Yokota, N, Hashimoto, H, Imanaka, T, Inoue, T, Kai, Y.
Deposit date:2004-07-28
Release date:2005-08-02
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
1WNS
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BU of 1wns by Molmil
Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakaraensis KOD1
Descriptor: DNA POLYMERASE
Authors:Hashimoto, H, Inoue, T, Kai, Y, Fujiwara, S, Takagi, M, Nishioka, M, Imanaka, T.
Deposit date:2004-08-09
Release date:2004-08-17
Last modified:2017-08-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of DNA Polymerase from Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
J.Mol.Biol., 306, 2001
4GA6
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BU of 4ga6 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates
Descriptor: ADENOSINE MONOPHOSPHATE, Putative thymidine phosphorylase, SULFATE ION
Authors:Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4GA4
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BU of 4ga4 by Molmil
Crystal structure of AMP phosphorylase N-terminal deletion mutant
Descriptor: PHOSPHATE ION, Putative thymidine phosphorylase
Authors:Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.51 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
4G9I
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BU of 4g9i by Molmil
Crystal structure of T.kodakarensis HypF
Descriptor: Hydrogenase maturation protein HypF, ZINC ION
Authors:Tominaga, T, Watanabe, S, Matsumi, R, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2012-07-24
Release date:2012-10-24
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Structure of the [NiFe]-hydrogenase maturation protein HypF from Thermococcus kodakarensis KOD1.
Acta Crystallogr.,Sect.F, 68, 2012
4GA5
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BU of 4ga5 by Molmil
Crystal structure of AMP phosphorylase C-terminal deletion mutant in the apo-form
Descriptor: Putative thymidine phosphorylase
Authors:Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2012-07-25
Release date:2013-05-15
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization
J.Mol.Biol., 425, 2013
3N98
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BU of 3n98 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose and additives
Descriptor: 1,4-DIETHYLENE DIOXIDE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N8T
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BU of 3n8t by Molmil
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis
Descriptor: DI(HYDROXYETHYL)ETHER, TETRAETHYLENE GLYCOL, alpha-amylase, ...
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
3N92
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BU of 3n92 by Molmil
Crystal structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon Thermococcus kodakaraensis, in complex with glucose
Descriptor: alpha-amylase, GH57 family, beta-D-glucopyranose
Authors:Santos, C.R, Tonoli, C.C.C, Trindade, D.M, Betzel, C, Takata, H, Kuriki, T, Kanai, T, Imanaka, T, Arni, R.K, Murakami, M.T.
Deposit date:2010-05-28
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:Structural basis for branching-enzyme activity of glycoside hydrolase family 57: Structure and stability studies of a novel branching enzyme from the hyperthermophilic archaeon Thermococcus Kodakaraensis KOD1.
Proteins, 79, 2011
2CW8
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BU of 2cw8 by Molmil
Crystal structure of intein homing endonuclease II
Descriptor: Endonuclease PI-PkoII, GLYCEROL, SULFATE ION
Authors:Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
5AON
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BU of 5aon by Molmil
Crystal structure of the conserved N-terminal domain of Pex14 from Trypanosoma brucei
Descriptor: PEROXIN 14, SULFATE ION
Authors:Obita, T, Sugawara, Y, Mizuguchi, M, Watanabe, Y, Kawaguchi, K, Imanaka, T.
Deposit date:2015-09-11
Release date:2015-12-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.646 Å)
Cite:Characterization of the Interaction between Trypanosoma Brucei Pex5P and its Receptor Pex14P.
FEBS Lett., 590, 2016
2CW7
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BU of 2cw7 by Molmil
Crystal structure of intein homing endonuclease II
Descriptor: Endonuclease PI-PkoII, SULFATE ION
Authors:Matsumura, H, Takahashi, H, Inoue, T, Hashimoto, H, Nishioka, M, Fujiwara, S, Takagi, M, Imanaka, T, Kai, Y.
Deposit date:2005-06-17
Release date:2006-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of intein homing endonuclease II encoded in DNA polymerase gene from hyperthermophilic archaeon Thermococcus kodakaraensis strain KOD1
Proteins, 63, 2006
6JBD
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BU of 6jbd by Molmil
Phosphotransferase-ATP complex related to CoA biosynthesis pathway
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ...
Authors:Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
6JBC
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BU of 6jbc by Molmil
Phosphotransferase related to CoA biosynthesis pathway
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
Authors:Kita, A, Kishimoto, A, Shimosaka, T, Tomita, H, Yokooji, Y, Imanaka, T, Atomi, H, Miki, K.
Deposit date:2019-01-25
Release date:2020-01-29
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins, 88, 2020
2CVH
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BU of 2cvh by Molmil
Crystal structure of the RadB recombinase
Descriptor: DNA repair and recombination protein radB
Authors:Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2CVF
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BU of 2cvf by Molmil
Crystal structure of the RadB recombinase
Descriptor: DNA repair and recombination protein radB
Authors:Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
Deposit date:2005-06-03
Release date:2005-08-09
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2Z1E
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BU of 2z1e by Molmil
Crystal structure of HypE from Thermococcus kodakaraensis (outward form)
Descriptor: Hydrogenase expression/formation protein HypE
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
2Z1C
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BU of 2z1c by Molmil
Crystal structure of HypC from Thermococcus kodakaraensis KOD1
Descriptor: GLYCEROL, Hydrogenase expression/formation protein HypC, TETRAETHYLENE GLYCOL
Authors:Watanabe, S, Matsumi, R, Arai, T, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2007-05-08
Release date:2007-07-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of [NiFe] Hydrogenase Maturation Proteins HypC, HypD, and HypE: Insights into Cyanation Reaction by Thiol Redox Signaling
Mol.Cell, 27, 2007
3VM6
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BU of 3vm6 by Molmil
Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1 in complex with alpha-D-ribose-1,5-bisphosphate
Descriptor: 1,5-di-O-phosphono-alpha-D-ribofuranose, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Nakamura, A, Fujihashi, M, Aono, R, Sato, T, Nishiba, Y, Yoshida, S, Yano, A, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2011-12-08
Release date:2012-04-25
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287, 2012
3A12
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BU of 3a12 by Molmil
Crystal structure of Type III Rubisco complexed with 2-CABP
Descriptor: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
Authors:Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
Deposit date:2009-03-25
Release date:2010-04-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3A43
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BU of 3a43 by Molmil
Crystal structure of HypA
Descriptor: Hydrogenase nickel incorporation protein hypA, ZINC ION
Authors:Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K.
Deposit date:2009-06-30
Release date:2009-10-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation.
J.Mol.Biol., 394, 2009

 

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