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3SYB
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BU of 3syb by Molmil
Crystal structure of Pseudomonas aeruginosa OccD3 (OpdP)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Glycine-glutamate dipeptide porin OpdP, SULFATE ION
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-16
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T24
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BU of 3t24 by Molmil
Crystal structure of Pseudomonas aeruginosa OpdQ
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, SULFATE ION, porin
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-22
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SY9
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BU of 3sy9 by Molmil
Crystal structure of Pseudomonas aeruginosa OccD2 (OpdC)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Histidine porin OpdC, octyl beta-D-glucopyranoside
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-16
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T0S
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BU of 3t0s by Molmil
Crystal structure of Pseudomonas aeruginosa OccK4 (OpdL)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, porin
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-20
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SY7
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BU of 3sy7 by Molmil
Improved crystal structure of Pseudomonas aeruginosa OprD
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-15
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3SYS
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BU of 3sys by Molmil
Improved crystal structure of Pseudomonas aeruginosa OccK1 (OpdK)
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-ETHANEDIOL, 4-HYDROXY-3-METHOXYBENZOATE, ...
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-18
Release date:2012-02-08
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
3T20
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BU of 3t20 by Molmil
Crystal structure of Pseudomonas aeruginosa OccK5 (OpdH)
Descriptor: Cis-aconitate porin OpdH
Authors:van den Berg, B, Eren, E.
Deposit date:2011-07-22
Release date:2012-02-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012
6K35
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BU of 6k35 by Molmil
Crystal structure of GH20 exo beta-N-acetylglucosaminidase from Vibrio harveyi in complex with NAG-thiazoline
Descriptor: 3AR,5R,6S,7R,7AR-5-HYDROXYMETHYL-2-METHYL-5,6,7,7A-TETRAHYDRO-3AH-PYRANO[3,2-D]THIAZOLE-6,7-DIOL, Beta-N-acetylglucosaminidase Nag2
Authors:Meekrathok, P, Stubbs, K.A, Bulmer, D.M, van den Berg, B, Suginta, W.
Deposit date:2019-05-16
Release date:2020-05-13
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.36 Å)
Cite:NAG-thiazoline is a potent inhibitor of the Vibrio campbellii GH20 beta-N-Acetylglucosaminidase.
Febs J., 287, 2020
8P98
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BU of 8p98 by Molmil
BtuB3G3 bound to cyanocobalamin with ordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, Vitamin B12 transporter BtuB
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.97 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8OKV
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BU of 8okv by Molmil
lipoprotein BT2095 from Bacteroides thetaiotamicron bound to cyanocobalamin CnCbl
Descriptor: CYANOCOBALAMIN, Putative surface layer protein
Authors:Javier Abellon-Ruiz, J, van den Berg, B, Jana, K, Kleinekathofer, U, Silale, A, Frey, A.M, Basle, A, Trost, M.
Deposit date:2023-03-29
Release date:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
8P97
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BU of 8p97 by Molmil
BtuB3G3 bound to cyanocobalamin with disordered EL8
Descriptor: CYANOCOBALAMIN, Putative surface layer protein, TonB-dependent receptor
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2023-06-05
Release date:2023-08-16
Last modified:2023-09-20
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
5YQW
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BU of 5yqw by Molmil
Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marine Vibrio bacteria
Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NICKEL (II) ION, ...
Authors:Suginta, W, Sritho, N, Ranok, A, Kitaoku, Y, Bulmer, D.M, van den Berg, B, Fukamizo, T.
Deposit date:2017-11-08
Release date:2018-02-21
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Structure and function of a novel periplasmic chitooligosaccharide-binding protein from marineVibriobacteria.
J. Biol. Chem., 293, 2018
7BIZ
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BU of 7biz by Molmil
Structure of a B12 binding lipoprotein from Bacteroides thetaiotaomicron
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, CYANOCOBALAMIN, ...
Authors:Abellon-Ruiz, J, van den Berg, B.
Deposit date:2021-01-13
Release date:2022-03-02
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Gut Commensal Bacteroidetes Encode a Novel Class of Vitamin B 12 -Binding Proteins.
Mbio, 13, 2022
6GIE
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BU of 6gie by Molmil
Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 33-36 kDa outer membrane protein
Authors:Abellon-Ruiz, J, Zahn, M, Basle, A, van den Berg, B.
Deposit date:2018-05-10
Release date:2018-09-19
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of the Acinetobacter baumannii outer membrane protein Omp33.
Acta Crystallogr D Struct Biol, 74, 2018
6ZM1
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BU of 6zm1 by Molmil
Open-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZLU
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BU of 6zlu by Molmil
Closed-closed state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2021-01-20
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
6ZLT
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BU of 6zlt by Molmil
Open-open state of the Bt1762-Bt1763 levan transport system
Descriptor: SusC homolog, SusD homolog
Authors:White, J.B.R, van den Berg, B, Ranson, N.A.
Deposit date:2020-07-01
Release date:2020-11-11
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
5DL8
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BU of 5dl8 by Molmil
Crystal structure of Acinetobacter baumannii OccAB4
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Benzoate transport porin BenP, CALCIUM ION
Authors:Zahn, M, Basle, A, van den Berg, B.
Deposit date:2015-09-04
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL5
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BU of 5dl5 by Molmil
Crystal structure of Acinetobacter baumannii OccAB1
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Membrane protein, PHOSPHATE ION
Authors:Zahn, M, Basle, A, van den Berg, B.
Deposit date:2015-09-04
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL7
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BU of 5dl7 by Molmil
Crystal structure of Acinetobacter baumannii OccAB3
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, CALCIUM ION, Porin
Authors:Zahn, M, Basle, A, van den Berg, B.
Deposit date:2015-09-04
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
5DL6
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BU of 5dl6 by Molmil
Crystal structure of Acinetobacter baumannii OccAB2
Descriptor: Putative porin for vanillate trafficking (VanP)
Authors:Zahn, M, Basle, A, van den Berg, B.
Deposit date:2015-09-04
Release date:2016-02-03
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Insights into Outer Membrane Permeability of Acinetobacter baumannii.
Structure, 24, 2016
8BLW
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BU of 8blw by Molmil
Vitamin B12 transporter BtuB1 with lipoprotein BtuG1 from B. theta
Descriptor: Vitamin B12 transporter BtuB1, YncE family protein, beta-D-galactopyranose
Authors:Silale, A, Abellon-Ruiz, J, van den Berg, B.
Deposit date:2022-11-10
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (3.22 Å)
Cite:BtuB TonB-dependent transporters and BtuG surface lipoproteins form stable complexes for vitamin B 12 uptake in gut Bacteroides.
Nat Commun, 14, 2023
7VU1
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BU of 7vu1 by Molmil
Chitoporin from Escherichia coli complex with chitohexaose
Descriptor: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitoporin, ...
Authors:Suginta, W, Soysa, H.S.M, Amornloetwattana, R, van den Berg, B.
Deposit date:2021-11-01
Release date:2022-11-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chitporin from Escherichia coli complex with chitohexaose
To Be Published
8AA4
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BU of 8aa4 by Molmil
SusC components of the dextran utilisation system (utilisome)
Descriptor: SusC homolog
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
8AA1
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BU of 8aa1 by Molmil
Core SusCD transporter units from the levan utilisome with levan fructo-oligosaccharides DP 8-12
Descriptor: MAGNESIUM ION, SusC homolog, SusD homolog, ...
Authors:White, J.B.R, Silale, A, Ranson, N.A, van den Berg, B.
Deposit date:2022-06-29
Release date:2023-06-07
Last modified:2023-06-21
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023

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數據於2024-10-16公開中

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