7XOM
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7XOP
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7XOQ
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7XOR
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7XOJ
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7XOO
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7VF3
| Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Plexin-B1, ... | Authors: | Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J. | Deposit date: | 2021-09-10 | Release date: | 2022-08-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure, 30, 2022
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6A48
| Crystal structure of reelin N-terminal region | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Reelin | Authors: | Nagae, M, Takagi, J. | Deposit date: | 2018-06-19 | Release date: | 2019-06-19 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization. J.Biochem., 169, 2021
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2E26
| Crystal structure of two repeat fragment of reelin | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ... | Authors: | Yasui, N, Nogi, T, Kitao, T, Takagi, J. | Deposit date: | 2006-11-08 | Release date: | 2007-05-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors. Proc.Natl.Acad.Sci.Usa, 104, 2007
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1IJQ
| Crystal Structure of the LDL Receptor YWTD-EGF Domain Pair | Descriptor: | LOW-DENSITY LIPOPROTEIN RECEPTOR | Authors: | Jeon, H, Meng, W, Takagi, J, Eck, M.J, Springer, T.A, Blacklow, S.C. | Deposit date: | 2001-04-27 | Release date: | 2001-05-23 | Last modified: | 2018-04-04 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair. Nat.Struct.Biol., 8, 2001
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1L3Y
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1MQ8
| Crystal structure of alphaL I domain in complex with ICAM-1 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Integrin alpha-L, ... | Authors: | Shimaoka, M, Xiao, T, Liu, J.-H, Yang, Y, Dong, Y, Jun, C.-D, McCormack, A, Zhang, R, Joachimiak, A, Takagi, J, Wang, J.-H, Springer, T.A. | Deposit date: | 2002-09-15 | Release date: | 2003-01-14 | Last modified: | 2021-10-27 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structures of the aL I domain and its complex with ICAM-1 reveal a shape-shifting pathway for integrin regulation Cell(Cambridge,Mass.), 112, 2003
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2ZOT
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2ZPK
| Crystal structure of P20.1 Fab fragment in complex with its antigen peptide | Descriptor: | GLYCEROL, IgG1-lambda P20.1 Fab (heavy chain), IgG1-lambda P20.1 Fab (light chain), ... | Authors: | Nogi, T, Sanagawa, T, Takagi, J. | Deposit date: | 2008-07-16 | Release date: | 2008-12-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Novel affinity tag system using structurally defined antibody-tag interaction: application to single-step protein purification Protein Sci., 17, 2008
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3A7Q
| Structural basis for specific recognition of reelin by its receptors | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Yasui, N, Nogi, T, Takagi, J. | Deposit date: | 2009-10-01 | Release date: | 2010-03-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural Basis for Specific Recognition of Reelin by Its Receptors Structure, 18, 2010
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3WSX
| SorLA Vps10p domain in ligand-free form | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, ... | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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7VG7
| Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, TRIETHYLENE GLYCOL, ... | Authors: | Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J. | Deposit date: | 2021-09-14 | Release date: | 2022-08-17 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function. Structure, 30, 2022
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3WSZ
| SorLA Vps10p domain in complex with Abeta-derived peptide | Descriptor: | 10-mer peptide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.201 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3WSY
| SorLA Vps10p domain in complex with its own propeptide fragment | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Sortilin-related receptor, peptide from Sortilin-related receptor | Authors: | Kitago, Y, Nakata, Z, Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2014-03-30 | Release date: | 2015-02-04 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.11 Å) | Cite: | Structural basis for amyloidogenic peptide recognition by sorLA. Nat.Struct.Mol.Biol., 22, 2015
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3ASI
| Alpha-Neurexin-1 ectodomain fragment; LNS5-EGF3-LNS6 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-alpha | Authors: | Tanaka, H, Nogi, T, Yasui, N, Takagi, J. | Deposit date: | 2010-12-13 | Release date: | 2011-04-13 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural Basis for Variant-Specific Neuroligin-Binding by alpha-Neurexin Plos One, 6, 2011
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2ZOU
| Crystal structure of human F-spondin reeler domain (fragment 2) | Descriptor: | 1,2-ETHANEDIOL, Spondin-1 | Authors: | Nagae, M, Nogi, T, Takagi, J. | Deposit date: | 2008-06-07 | Release date: | 2008-10-14 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop Acta Crystallogr.,Sect.D, 64, 2008
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3AFC
| Mouse Semaphorin 6A extracellular domain | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Semaphorin-6A | Authors: | Yasui, N, Nogi, T, Mihara, E, Takagi, J. | Deposit date: | 2010-02-26 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3AL8
| Plexin A2 / Semaphorin 6A complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2, ... | Authors: | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | Deposit date: | 2010-07-28 | Release date: | 2010-10-06 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (3.6 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3AL9
| Mouse Plexin A2 extracellular domain | Descriptor: | 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-A2 | Authors: | Nogi, T, Yasui, N, Mihara, E, Takagi, J. | Deposit date: | 2010-07-28 | Release date: | 2010-10-06 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structural basis for semaphorin signalling through the plexin receptor. Nature, 467, 2010
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3VN4
| Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, A disintegrin and metalloproteinase with thrombospondin motifs 13, ... | Authors: | Nakayama, D, Akiyama, M, Takeda, S, Kokame, K, Takagi, J, Miyata, T. | Deposit date: | 2011-12-21 | Release date: | 2012-12-26 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural analysis and biochemical studies of ADAMTS13 P475S mutant To be Published
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