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2CPM
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Solution structure of the R3H domain of human sperm-associated antigen 7
Descriptor: Sperm-associated antigen 7
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the R3H domain of human sperm-associated antigen 7
To be Published
2CPH
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BU of 2cph by Molmil
Solution structure of the C-terminal RNA recognition motif of hypothetical RNA-binding protein RBM19
Descriptor: RNA binding motif protein 19
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal RNA recognition motif of hypothetical RNA-binding protein RBM19
To be Published
2CPD
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BU of 2cpd by Molmil
Solution structure of the RNA recognition motif of human APOBEC-1 complementation factor, ACF
Descriptor: APOBEC-1 stimulating protein
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the RNA recognition motif of human APOBEC-1 complementation factor, ACF
To be Published
2CPN
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BU of 2cpn by Molmil
Solution structure of the second dsRBD of TAR RNA-binding protein 2
Descriptor: TAR RNA-binding protein 2
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second dsRBD of TAR RNA-binding protein 2
To be Published
2CPR
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BU of 2cpr by Molmil
Solution structure of the HRDC domain of human Exosome component 10
Descriptor: Exosome component 10
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the HRDC domain of human Exosome component 10
To be Published
2CPJ
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BU of 2cpj by Molmil
Solution structure of the N-terminal RNA recognition motif of NonO
Descriptor: Non-POU domain-containing octamer-binding protein
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal RNA recognition motif of NonO
To be Published
2CPQ
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BU of 2cpq by Molmil
Solution structure of the N-terminal KH domain of human FXR1
Descriptor: Fragile X mental retardation syndrome related protein 1, isoform b'
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the N-terminal KH domain of human FXR1
To be Published
2CPF
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BU of 2cpf by Molmil
Solution structure of the penultimate RNA recognition motif of hypothetical RNA-binding protein RBM19
Descriptor: RNA binding motif protein 19
Authors:Nagata, T, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-19
Release date:2005-11-19
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the penultimate RNA recognition motif of hypothetical RNA-binding protein RBM19
To be Published
2EBI
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BU of 2ebi by Molmil
Arabidopsis GT-1 DNA-binding domain with T133D phosphomimetic mutation
Descriptor: DNA binding protein GT-1
Authors:Nagata, T, Noto, K, Niyada, E, Ikeda, Y, Yamamoto, Y, Uesugi, S, Murata, J, Hiratsuka, K, Katahira, M.
Deposit date:2007-02-08
Release date:2008-02-19
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structures of the trihelix DNA-binding domains of the wild-type and a phosphomimetic mutant of Arabidopsis GT-1: mechanism for an increase in DNA-binding affinity through phosphorylation.
Proteins, 78, 2010
5H7U
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BU of 5h7u by Molmil
NMR structure of eIF3 36-163
Descriptor: Eukaryotic translation initiation factor 3 subunit C
Authors:Nagata, T, Obayashi, E.
Deposit date:2016-11-21
Release date:2017-05-31
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5.
Cell Rep, 18, 2017
7BV9
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BU of 7bv9 by Molmil
The NMR structure of the BEN domain from human NAC1
Descriptor: Nucleus accumbens-associated protein 1
Authors:Nagata, T, Kobayashi, N, Nakayama, N, Obayashi, E, Urano, T.
Deposit date:2020-04-09
Release date:2021-02-17
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Nucleus Accumbens-Associated Protein 1 Binds DNA Directly through the BEN Domain in a Sequence-Specific Manner.
Biomedicines, 8, 2020
2RVH
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BU of 2rvh by Molmil
NMR structure of eIF1
Descriptor: Eukaryotic translation initiation factor eIF-1
Authors:Nagata, T, Obayashi, E, Asano, K.
Deposit date:2015-10-16
Release date:2016-10-26
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Molecular Landscape of the Ribosome Pre-initiation Complex during mRNA Scanning: Structural Role for eIF3c and Its Control by eIF5
Cell Rep, 18, 2017
7X9U
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BU of 7x9u by Molmil
Type-II KH motif of human mitochondrial RbfA
Descriptor: Putative ribosome-binding factor A, mitochondrial
Authors:Kuwasako, K, Suzuki, S, Furue, M, Takizawa, M, Takahashi, M, Tsuda, K, Nagata, T, Watanabe, S, Tanaka, A, Kobayashi, N, Kigawa, T, Guntert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2022-03-16
Release date:2023-01-25
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:1 H, 13 C, and 15 N resonance assignments and solution structures of the KH domain of human ribosome binding factor A, mtRbfA, involved in mitochondrial ribosome biogenesis.
Biomol.Nmr Assign., 16, 2022
1IQT
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BU of 1iqt by Molmil
Solution structure of the C-terminal RNA-binding domain of heterogeneous nuclear ribonucleoprotein D0 (AUF1)
Descriptor: heterogeneous nuclear ribonucleoprotein D0
Authors:Katahira, M, Miyanoiri, Y, Enokizono, Y, Matsuda, G, Nagata, T, Ishikawa, F, Uesugi, S.
Deposit date:2001-08-01
Release date:2002-08-07
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Structure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA.
J.Mol.Biol., 311, 2001
8WLS
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BU of 8wls by Molmil
Bcl-xL in complex with HBx BH3 delta C peptide
Descriptor: Bcl-2-like protein 1, Protein X
Authors:Kobayashi, N, Nagata, T, Kusunoki, H.
Deposit date:2023-10-01
Release date:2024-03-20
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structural Insights into the Interaction between the C-Terminal-Deleted BH3-like Motif Peptide of Hepatitis B Virus X Protein and Bcl-x L.
Biochemistry, 63, 2024
8JH8
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BU of 8jh8 by Molmil
Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Feruloyl esterase, ...
Authors:Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M.
Deposit date:2023-05-22
Release date:2024-04-17
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Based Characterization and Improvement of an Enzymatic Activity of Acremonium alcalophilum Feruloyl Esterase
Acs Sustain Chem Eng, 12, 2024
8JH9
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BU of 8jh9 by Molmil
Structure-based characterization and improvement of an enzymatic activity of Acremonium alcalophilum feruloyl esterase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, Feruloyl esterase with ferulic acid, ...
Authors:Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M.
Deposit date:2023-05-22
Release date:2024-04-17
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure-Based Characterization and Improvement of an Enzymatic Activity of Acremonium alcalophilum Feruloyl Esterase
Acs Sustain Chem Eng, 12, 2024
8IYB
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BU of 8iyb by Molmil
Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID, ...
Authors:Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M.
Deposit date:2023-04-04
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii.
Int.J.Biol.Macromol., 253, 2023
8IYC
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BU of 8iyc by Molmil
Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M.
Deposit date:2023-04-04
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii.
Int.J.Biol.Macromol., 253, 2023
8IY8
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BU of 8iy8 by Molmil
Structure insight into substrate recognition and catalysis by feruloyl esterase from Aspergillus sydowii
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, Feruloyl esterase
Authors:Phienluphon, A, Kondo, K, Mikami, B, Nagata, T, Katahira, M.
Deposit date:2023-04-04
Release date:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into the molecular mechanisms of substrate recognition and hydrolysis by feruloyl esterase from Aspergillus sydowii.
Int.J.Biol.Macromol., 253, 2023
1WG1
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BU of 1wg1 by Molmil
Solution structure of RNA binding domain in BAB13405(homolog EXC-7)
Descriptor: KIAA1579 protein
Authors:Tsuda, K, Muto, Y, Nagata, T, Suzuki, S, Someya, T, Kigawa, T, Terada, T, Shirouzu, M, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-27
Release date:2004-11-27
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:Solution structure of RNA binding domain in BAB13405(homolog EXC-7)
To be Published
8KCQ
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BU of 8kcq by Molmil
Solution structures of the N-terminal divergent caplonin homology (NN-CH) domains of human intraflagellar transport protein 54
Descriptor: TRAF3-interacting protein 1
Authors:Dang, W, Kuwasako, K, He, F, Takahashi, M, Tsuda, K, Nagata, T, Tanaka, A, Kobayashi, N, Kigawa, T, Guentert, P, Shirouzu, M, Yokoyama, S, Muto, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2023-08-08
Release date:2024-05-22
Method:SOLUTION NMR
Cite:1 H, 13 C, and 15 N resonance assignments and solution structure of the N-terminal divergent calponin homology (NN-CH) domain of human intraflagellar transport protein 54.
Biomol.Nmr Assign., 18, 2024
1UAW
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BU of 1uaw by Molmil
Solution structure of the N-terminal RNA-binding domain of mouse Musashi1
Descriptor: mouse-musashi-1
Authors:Miyanoiri, Y, Kobayashi, H, Watanabe, M, Ikeda, T, Nagata, T, Okano, H, Uesugi, S, Katahira, M.
Deposit date:2003-03-24
Release date:2004-03-24
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Origin of higher affinity to RNA of the N-terminal RNA-binding domain than that of the C-terminal one of a mouse neural protein, musashi1, as revealed by comparison of their structures, modes of interaction, surface electrostatic potentials, and backbone dynamics
J.Biol.Chem., 278, 2003
5X3Z
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BU of 5x3z by Molmil
Solution structure of musashi1 RBD2 in complex with RNA
Descriptor: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1
Authors:Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M.
Deposit date:2017-02-09
Release date:2017-12-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Molecules, 22, 2017
5X3Y
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Refined solution structure of musashi1 RBD2
Descriptor: RNA-binding protein Musashi homolog 1
Authors:Iwaoka, R, Nagata, T, Tsuda, K, Imai, T, Okano, H, Kobayashi, N, Katahira, M.
Deposit date:2017-02-09
Release date:2017-12-13
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA
Molecules, 22, 2017

222036

數據於2024-07-03公開中

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