4L4I
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4L4H
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7P80
| Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state) | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-06-29 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.98 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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7P81
| Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) | Descriptor: | ADEP2, ATP-dependent Clp protease proteolytic subunit | Authors: | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | Deposit date: | 2021-07-21 | Release date: | 2022-06-29 | Last modified: | 2024-01-31 | Method: | X-RAY DIFFRACTION (2.79 Å) | Cite: | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis. Embo J., 41, 2022
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6KGJ
| M1Q-hNTAQ1 C28S | Descriptor: | Protein N-terminal glutamine amidohydrolase | Authors: | Park, M.R, Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2019-07-11 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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6KHZ
| p62/SQSTM1 ZZ domain with Gly-peptide | Descriptor: | Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2019-07-16 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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6KGI
| RLGS-yUbr1 Ubr box | Descriptor: | E3 ubiquitin-protein ligase UBR1, ZINC ION | Authors: | Heo, J, Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2019-07-11 | Release date: | 2020-01-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.04 Å) | Cite: | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway. J.Biol.Chem., 295, 2020
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7D34
| AtClpS1-peptide complex | Descriptor: | ACETIC ACID, ALANINE, ATP-dependent Clp protease adapter protein CLPS1, ... | Authors: | Heo, J, Kim, L, Kwon, D.H, Song, H.K. | Deposit date: | 2020-09-18 | Release date: | 2021-04-28 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.007 Å) | Cite: | Structural basis for the N-degron specificity of ClpS1 from Arabidopsis thaliana. Protein Sci., 30, 2021
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4I0Y
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4KEI
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4KEK
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4KEJ
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5IO3
| Crystal structure of the legionella pneumophila effector protein RavZ - I422 | Descriptor: | Uncharacterized protein RavZ | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | Deposit date: | 2016-03-08 | Release date: | 2016-11-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.74 Å) | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane Autophagy, 13, 2017
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5IZV
| Crystal structure of the legionella pneumophila effector protein RavZ - F222 | Descriptor: | Uncharacterized protein RavZ | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | Deposit date: | 2016-03-26 | Release date: | 2016-11-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.814 Å) | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane Autophagy, 13, 2017
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5HZY
| Crystal structure of the legionella pneumophila effector protein RavZ - P6322 | Descriptor: | Uncharacterized protein RavZ | Authors: | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | Deposit date: | 2016-02-03 | Release date: | 2016-11-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.548 Å) | Cite: | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane Autophagy, 13, 2017
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7VGW
| Yeast gid10 with Pro-peptide | Descriptor: | BJ4_G0041530.mRNA.1.CDS.1 | Authors: | Shin, J.S, Park, S.H, Kim, L, Heo, J, Song, H.K. | Deposit date: | 2021-09-19 | Release date: | 2022-07-27 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of yeast Gid10 in complex with Pro/N-degron. Biochem.Biophys.Res.Commun., 582, 2021
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5XAC
| CLIR - LC3B | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-03-12 | Release date: | 2017-07-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.701 Å) | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ Biochem. Biophys. Res. Commun., 490, 2017
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5XAE
| mutNLIR_LC3B | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-03-12 | Release date: | 2017-07-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.996 Å) | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ Biochem. Biophys. Res. Commun., 490, 2017
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5XAD
| NLIR - LC3B fusion protein | Descriptor: | Microtubule-associated proteins 1A/1B light chain 3B, Uncharacterised protein | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-03-12 | Release date: | 2017-07-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.88 Å) | Cite: | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ Biochem. Biophys. Res. Commun., 490, 2017
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5YPC
| p62/SQSTM1 ZZ domain with Phe-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.962 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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5YPB
| p62/SQSTM1 ZZ domain with His-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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5YPH
| p62/SQSTM1 ZZ domain with Ile-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.629 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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5YP8
| p62/SQSTM1 ZZ domain with Arg-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.448 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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5YPG
| p62/SQSTM1 ZZ domain with Leu-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.199 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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5YPF
| p62/SQSTM1 ZZ domain with Trp-peptide | Descriptor: | 78 kDa glucose-regulated protein,Sequestosome-1, ZINC ION | Authors: | Kwon, D.H, Kim, L, Song, H.K. | Deposit date: | 2017-11-01 | Release date: | 2018-08-29 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.951 Å) | Cite: | Insights into degradation mechanism of N-end rule substrates by p62/SQSTM1 autophagy adapter. Nat Commun, 9, 2018
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