8KCW
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![BU of 8kcw by Molmil](/molmil-images/mine/8kcw) | Cryo-EM structure of human SIDT1 bound to cholesterol | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, SID1 transmembrane family member 1, ... | Authors: | Hirano, Y, Ohto, U, Shimizu, T. | Deposit date: | 2023-08-08 | Release date: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (2.77 Å) | Cite: | Cryo-EM analysis reveals human SID-1 transmembrane family member 1 dynamics underlying lipid hydrolytic activity. Commun Biol, 7, 2024
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8KCX
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![BU of 8kcx by Molmil](/molmil-images/mine/8kcx) | Cryo-EM structure of human SIDT1 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SID1 transmembrane family member 1, ZINC ION, ... | Authors: | Hirano, Y, Ohto, U, Shimizu, T. | Deposit date: | 2023-08-08 | Release date: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (2.96 Å) | Cite: | Cryo-EM analysis reveals human SID-1 transmembrane family member 1 dynamics underlying lipid hydrolytic activity. Commun Biol, 7, 2024
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5XFL
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![BU of 5xfl by Molmil](/molmil-images/mine/5xfl) | |
1WMH
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![BU of 1wmh by Molmil](/molmil-images/mine/1wmh) | Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha | Descriptor: | Partitioning defective-6 homolog alpha, Protein kinase C, iota type | Authors: | Hirano, Y, Yoshinaga, S, Suzuki, N.N, Horiuchi, M, Kohjima, M, Takeya, R, Sumimoto, H, Inagaki, F. | Deposit date: | 2004-07-09 | Release date: | 2004-12-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structure of a Cell Polarity Regulator, a Complex between Atypical PKC and Par6 PB1 Domains J.Biol.Chem., 280, 2005
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5D8V
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![BU of 5d8v by Molmil](/molmil-images/mine/5d8v) | Ultra-high resolution structure of high-potential iron-sulfur protein | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Hirano, Y, Takeda, K, Miki, K. | Deposit date: | 2015-08-18 | Release date: | 2016-05-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.48 Å) | Cite: | Charge-density analysis of an iron-sulfur protein at an ultra-high resolution of 0.48 angstrom Nature, 534, 2016
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6M4K
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![BU of 6m4k by Molmil](/molmil-images/mine/6m4k) | X-ray crystal structure of wild type alpha-amylase I from Eisenia fetida | Descriptor: | ACETATE ION, Alpha-amylase, CALCIUM ION, ... | Authors: | Hirano, Y, Tsukamoto, K, Ariki, S, Naka, Y, Ueda, M, Tamada, T. | Deposit date: | 2020-03-07 | Release date: | 2020-09-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | X-ray crystallographic structural studies of alpha-amylase I from Eisenia fetida. Acta Crystallogr D Struct Biol, 76, 2020
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6M4L
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![BU of 6m4l by Molmil](/molmil-images/mine/6m4l) | X-ray crystal structure of the E249Q mutant of alpha-amylase I from Eisenia fetida | Descriptor: | 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | Authors: | Hirano, Y, Tsukamoto, K, Ariki, S, Naka, Y, Ueda, M, Tamada, T. | Deposit date: | 2020-03-07 | Release date: | 2020-09-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | X-ray crystallographic structural studies of alpha-amylase I from Eisenia fetida. Acta Crystallogr D Struct Biol, 76, 2020
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6M4M
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![BU of 6m4m by Molmil](/molmil-images/mine/6m4m) | X-ray crystal structure of the E249Q mutan of alpha-amylase I and maltohexaose complex from Eisenia fetida | Descriptor: | Alpha-amylase, CALCIUM ION, CHLORIDE ION, ... | Authors: | Hirano, Y, Tsukamoto, K, Ariki, S, Naka, Y, Ueda, M, Tamada, T. | Deposit date: | 2020-03-07 | Release date: | 2020-09-16 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | X-ray crystallographic structural studies of alpha-amylase I from Eisenia fetida. Acta Crystallogr D Struct Biol, 76, 2020
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1VD2
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![BU of 1vd2 by Molmil](/molmil-images/mine/1vd2) | Solution Structure of the PB1 domain of PKCiota | Descriptor: | Protein kinase C, iota type | Authors: | Hirano, Y, Yoshinaga, S, Yokochi, M, Ogura, K, Noda, Y, Sumimoto, H, Inagaki, F. | Deposit date: | 2004-03-18 | Release date: | 2004-09-14 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Solution structure of atypical protein kinase C PB1 domain and its mode of interaction with ZIP/p62 and MEK5 J.Biol.Chem., 279, 2004
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6KPB
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![BU of 6kpb by Molmil](/molmil-images/mine/6kpb) | |
5Y04
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![BU of 5y04 by Molmil](/molmil-images/mine/5y04) | |
5B3G
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![BU of 5b3g by Molmil](/molmil-images/mine/5b3g) | The crystal structure of the heterodimer of SHORT-ROOT and SCARECROW GRAS domains | Descriptor: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, PHOSPHATE ION, ... | Authors: | Hirano, Y, Nakagawa, M, Hakoshima, T. | Deposit date: | 2016-02-29 | Release date: | 2017-03-01 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD Nat Plants, 3, 2017
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5B3H
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![BU of 5b3h by Molmil](/molmil-images/mine/5b3h) | The crystal structure of the JACKDAW/IDD10 bound to the heterodimeric SHR-SCR complex | Descriptor: | Protein SCARECROW, Protein SHORT-ROOT, ZINC ION, ... | Authors: | Hirano, Y, Suyama, T, Nakagawa, M, Hakoshima, T. | Deposit date: | 2016-02-29 | Release date: | 2017-03-01 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Structure of the SHR-SCR heterodimer bound to the BIRD/IDD transcriptional factor JKD Nat Plants, 3, 2017
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3VRC
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![BU of 3vrc by Molmil](/molmil-images/mine/3vrc) | Crystal structure of cytochrome c' from Thermochromatium tepidum | Descriptor: | CADMIUM ION, CHLORIDE ION, Cytochrome c', ... | Authors: | Hirano, Y, Kimura, Y, Suzuki, H, Miki, K, Wang, Z.-Y. | Deposit date: | 2012-04-09 | Release date: | 2012-09-12 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Structure Analysis and Comparative Characterization of the Cytochrome c' and Flavocytochrome c from Thermophilic Purple Photosynthetic Bacterium Thermochromatium tepidum Biochemistry, 51, 2012
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3VRD
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![BU of 3vrd by Molmil](/molmil-images/mine/3vrd) | Crystal structure of flavocytochrome c from Thermochromatium tepidum | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Flavocytochrome c flavin subunit, Flavocytochrome c heme subunit, ... | Authors: | Hirano, Y, Kimura, Y, Suzuki, H, Miki, K, Wang, Z.-Y. | Deposit date: | 2012-04-09 | Release date: | 2012-09-12 | Last modified: | 2023-12-06 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structure Analysis and Comparative Characterization of the Cytochrome c' and Flavocytochrome c from Thermophilic Purple Photosynthetic Bacterium Thermochromatium tepidum Biochemistry, 51, 2012
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6IEJ
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![BU of 6iej by Molmil](/molmil-images/mine/6iej) | The C2 domain of cytosolic phospholipase A2 alpha bound to phosphatidylcholine | Descriptor: | 1,2-dihexanoyl-sn-glycero-3-phosphocholine, CALCIUM ION, Cytosolic phospholipase A2, ... | Authors: | Hirano, Y, Gao, Y.G, Stephenson, D.J, Vu, N.T, Malinina, L, Chalfant, C.E, Patel, D.J, Brown, R.E. | Deposit date: | 2018-09-14 | Release date: | 2019-05-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.206 Å) | Cite: | Structural basis of phosphatidylcholine recognition by the C2-domain of cytosolic phospholipase A2alpha. Elife, 8, 2019
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6KPD
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![BU of 6kpd by Molmil](/molmil-images/mine/6kpd) | |
3A9F
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![BU of 3a9f by Molmil](/molmil-images/mine/3a9f) | Crystal structure of the C-terminal domain of cytochrome cz from Chlorobium tepidum | Descriptor: | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, Cytochrome c, HEME C, ... | Authors: | Hirano, Y, Higuchi, M, Azai, C, Oh-oka, H, Miki, K, Wang, Z.-Y. | Deposit date: | 2009-10-25 | Release date: | 2010-03-02 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Crystal structure of the electron carrier domain of the reaction center cytochrome c(z) subunit from green photosynthetic bacterium Chlorobium tepidum J.Mol.Biol., 397, 2010
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3AU5
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![BU of 3au5 by Molmil](/molmil-images/mine/3au5) | |
3AU4
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![BU of 3au4 by Molmil](/molmil-images/mine/3au4) | |
2Z4I
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![BU of 2z4i by Molmil](/molmil-images/mine/2z4i) | Crystal structure of the Cpx pathway activator NlpE from Escherichia coli | Descriptor: | Copper homeostasis protein cutF, HEXAETHYLENE GLYCOL, SULFATE ION | Authors: | Hirano, Y, Hossain, M.M, Takeda, K, Tokuda, H, Miki, K. | Deposit date: | 2007-06-18 | Release date: | 2007-09-04 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure, 15, 2007
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2Z4H
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![BU of 2z4h by Molmil](/molmil-images/mine/2z4h) | Crystal structure of the Cpx pathway activator NlpE from Escherichia coli | Descriptor: | Copper homeostasis protein cutF, SULFATE ION | Authors: | Hirano, Y, Hossain, M.M, Takeda, K, Tokuda, H, Miki, K. | Deposit date: | 2007-06-18 | Release date: | 2007-09-04 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli Structure, 15, 2007
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3X34
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![BU of 3x34 by Molmil](/molmil-images/mine/3x34) | Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 1 crystal | Descriptor: | CALCIUM ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.76 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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3X32
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![BU of 3x32 by Molmil](/molmil-images/mine/3x32) | Crystal structure of the oxidized form of the solubilized domain of porcine cytochrome b5 in form 1 crystal | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Cytochrome b5, ... | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.83 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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3X35
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![BU of 3x35 by Molmil](/molmil-images/mine/3x35) | Crystal structure of the reduced form of the solubilized domain of porcine cytochrome b5 in form 2 crystal | Descriptor: | ACETATE ION, Cytochrome b5, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Hirano, Y, Kimura, S, Tamada, T. | Deposit date: | 2015-01-14 | Release date: | 2015-07-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.95 Å) | Cite: | High-resolution crystal structures of the solubilized domain of porcine cytochrome b5. Acta Crystallogr.,Sect.D, 71, 2015
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