6A7V
| Crystal structure of Mycobacterium tuberculosis VapBC11 toxin-antitoxin complex | Descriptor: | Antitoxin VapB11, PENTAETHYLENE GLYCOL, Ribonuclease VapC11, ... | Authors: | Deep, A, Thakur, K.G. | Deposit date: | 2018-07-04 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.67 Å) | Cite: | Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation. Nucleic Acids Res., 46, 2018
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7YK3
| Crystal structure of DarTG toxin-antitoxin complex from Mycobacterium tuberculosis | Descriptor: | DNA ADP-ribosyl glycohydrolase, DNA ADP-ribosyl transferase, PHOSPHATE ION | Authors: | Deep, A, Kaur, J, Singh, L, Thakur, K.G. | Deposit date: | 2022-07-21 | Release date: | 2023-05-31 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural insights into DarT toxin neutralization by cognate DarG antitoxin: ssDNA mimicry by DarG C-terminal domain keeps the DarT toxin inhibited. Structure, 31, 2023
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7C48
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7C46
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8DK3
| CryoEM structure of Pseudomonas aeruginosa PA14 JetC ATPase domain bound to DNA and cWHD domain of JetA | Descriptor: | DNA (26-MER), JetA, JetC, ... | Authors: | Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K. | Deposit date: | 2022-07-01 | Release date: | 2022-10-05 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (3.28 Å) | Cite: | The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell, 82, 2022
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8DK2
| CryoEM structure of Pseudomonas aeruginosa PA14 JetABC in an unclamped state trapped in ATP dependent dimeric form | Descriptor: | DNA (26-MER), JetA, JetB, ... | Authors: | Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K. | Deposit date: | 2022-07-01 | Release date: | 2022-10-05 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (4.1 Å) | Cite: | The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell, 82, 2022
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8DK1
| CryoEM structure of JetABC (head construct) from Pseudomonas aeruginosa PA14 | Descriptor: | JetA, JetB, JetC | Authors: | Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K. | Deposit date: | 2022-07-01 | Release date: | 2022-10-05 | Last modified: | 2024-06-12 | Method: | ELECTRON MICROSCOPY (2.95 Å) | Cite: | The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell, 82, 2022
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7TIL
| CryoEM structure of JetD from Pseudomonas aeruginosa | Descriptor: | JetD | Authors: | Deep, A, Gu, Y, Gao, Y, Ego, K, Herzik, M, Zhou, H, Corbett, K. | Deposit date: | 2022-01-13 | Release date: | 2022-10-05 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.7 Å) | Cite: | The SMC-family Wadjet complex protects bacteria from plasmid transformation by recognition and cleavage of closed-circular DNA. Mol.Cell, 82, 2022
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8V47
| CryoEM structure of AriA-AriB complex (Form II) | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, AriA antitoxin, AriB | Authors: | Deep, A, Corbett, K.D. | Deposit date: | 2023-11-28 | Release date: | 2024-06-26 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (4.08 Å) | Cite: | Architecture and activation mechanism of the bacterial PARIS defence system. Nature, 634, 2024
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8V46
| CryoEM structure of AriA-AriB complex (Form I) | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, AriA antitoxin, AriB, ... | Authors: | Deep, A, Corbett, K.D. | Deposit date: | 2023-11-28 | Release date: | 2024-06-26 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3.09 Å) | Cite: | Architecture and activation mechanism of the bacterial PARIS defence system. Nature, 634, 2024
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8V48
| CryoEM structure of AriA-AriB complex (Form III) | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, AriA antitoxin, AriB | Authors: | Deep, A, Corbett, K.D. | Deposit date: | 2023-11-28 | Release date: | 2024-06-26 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3.68 Å) | Cite: | Architecture and activation mechanism of the bacterial PARIS defence system. Nature, 634, 2024
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8V45
| CryoEM structure of AriA-Ocr complex | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, AriA antitoxin, Protein Ocr | Authors: | Deep, A, Corbett, K.D. | Deposit date: | 2023-11-28 | Release date: | 2024-06-26 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3.63 Å) | Cite: | Architecture and activation mechanism of the bacterial PARIS defence system. Nature, 634, 2024
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8V49
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4URS
| Crystal Structure of GGDEF domain from T.maritima | Descriptor: | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE, ... | Authors: | Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J. | Deposit date: | 2014-07-02 | Release date: | 2014-10-08 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.27 Å) | Cite: | Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability Plos One, 9, 2014
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4URG
| Crystal Structure of GGDEF domain from T.maritima (active-like dimer) | Descriptor: | 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE | Authors: | Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J. | Deposit date: | 2014-06-30 | Release date: | 2014-10-08 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability Plos One, 9, 2014
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4URQ
| Crystal Structure of GGDEF domain (I site mutant) from T.maritima | Descriptor: | DIGUANYLATE CYCLASE | Authors: | Deepthi, A, Liew, C.W, Liang, Z.X, Swamianthan, K, Lescar, J. | Deposit date: | 2014-07-01 | Release date: | 2014-10-08 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability Plos One, 9, 2014
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5WZ4
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5WZF
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7UYX
| Structure of bacteriophage PA1c gp2 | Descriptor: | Bacteriophage PA1C gp2 | Authors: | Enustun, E, Deep, A, Gu, Y, Nguyen, K, Chaikeeratisak, V, Armbruster, E, Ghassemian, M, Pogliano, J, Corbett, K.D. | Deposit date: | 2022-05-07 | Release date: | 2023-05-10 | Last modified: | 2024-04-10 | Method: | X-RAY DIFFRACTION (2.63 Å) | Cite: | Identification of the bacteriophage nucleus protein interaction network. Nat.Struct.Mol.Biol., 30, 2023
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7L08
| Cryo-EM structure of the human 55S mitoribosome-RRFmt complex. | Descriptor: | 12S rRNA, 16S RRNA, 28S ribosomal protein S10, ... | Authors: | Koripella, R, Agrawal, E.K, Deep, A, Agrawal, R.K. | Deposit date: | 2020-12-11 | Release date: | 2021-05-12 | Last modified: | 2024-10-16 | Method: | ELECTRON MICROSCOPY (3.49 Å) | Cite: | Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance. Nat Commun, 12, 2021
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7SQQ
| 201Phi2-1 Chimallin Cubic (O, 24mer) assembly | Descriptor: | Chimallin | Authors: | Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. | Deposit date: | 2021-11-06 | Release date: | 2022-07-27 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (4.2 Å) | Cite: | Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
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7SQR
| 201phi2-1 Chimallin localized tetramer reconstruction | Descriptor: | Chimallin | Authors: | Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. | Deposit date: | 2021-11-06 | Release date: | 2022-07-27 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
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7SQU
| Goslar chimallin C4 tetramer localized reconstruction | Descriptor: | Chimallin | Authors: | Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. | Deposit date: | 2021-11-06 | Release date: | 2022-07-27 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (2.6 Å) | Cite: | Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
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7SQS
| 201phi2-1 Chimallin C1 localized reconstruction | Descriptor: | Chimallin | Authors: | Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. | Deposit date: | 2021-11-06 | Release date: | 2022-07-27 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
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7SQV
| Goslar chimallin C1 localized reconstruction | Descriptor: | Chimallin | Authors: | Laughlin, T.G, Deep, A, Prichard, A.M, Seitz, C, Gu, Y, Enustun, E, Suslov, S, Khanna, K, Birkholz, E.A, Amaro, R.E, Pogliano, J, Corbett, K.D, Villa, E. | Deposit date: | 2021-11-06 | Release date: | 2022-07-27 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (2.3 Å) | Cite: | Architecture and self-assembly of the jumbo bacteriophage nuclear shell. Nature, 608, 2022
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