5ZIN
| Crystal structure of bacteriorhodopsin at 1.27 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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5ZIL
| Crystal structure of bacteriorhodopsin at 1.29 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.29 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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5ZIM
| Crystal structure of bacteriorhodopsin at 1.25 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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6IED
| Crystal structure of heme A synthase from Bacillus subtilis | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ... | Authors: | Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K. | Deposit date: | 2018-09-13 | Release date: | 2018-11-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal structure of heme A synthase fromBacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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5X0G
| Free serine kinase (E30A mutant) in complex with ADP | Descriptor: | 2-hydroxy-3-[4-(2-hydroxy-3-sulfopropyl)piperazin-1-yl]propane-1-sulfonic acid, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-01-20 | Release date: | 2017-04-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol., 12, 2017
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5X0J
| Free serine kinase (E30Q mutant) in complex with phosphoserine and AMP | Descriptor: | ADENOSINE MONOPHOSPHATE, Free serine kinase, MAGNESIUM ION, ... | Authors: | Nagata, R, Fujihashi, M, Miki, K. | Deposit date: | 2017-01-20 | Release date: | 2017-04-12 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.43 Å) | Cite: | Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol., 12, 2017
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5X0F
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5X0K
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5ZCA
| Crystal structure of lambda repressor (1-20) fused with maltose-binding protein | Descriptor: | CITRIC ACID, Repressor protein cI,Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Hanazono, Y, Takeda, K, Miki, K. | Deposit date: | 2018-02-16 | Release date: | 2018-08-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.801 Å) | Cite: | Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor Febs Open Bio, 8, 2018
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7E6P
| Fab-amyloid beta fragment complex | Descriptor: | 1,2-ETHANEDIOL, Amyloid beta fragment with an intramolecular disulfide bond at positions 17 and 28, DI(HYDROXYETHYL)ETHER, ... | Authors: | Kita, A, Irie, K, Irie, Y, Miki, K. | Deposit date: | 2021-02-23 | Release date: | 2022-01-05 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Characterization of a Conformation-Restricted Amyloid beta Peptide and Immunoreactivity of Its Antibody in Human AD brain. Acs Chem Neurosci, 12, 2021
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6A2J
| Crystal structure of heme A synthase from Bacillus subtilis | Descriptor: | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, COPPER (II) ION, Heme A synthase, ... | Authors: | Niwa, S, Takeda, K, Kosugi, M, Tsutsumi, E, Miki, K. | Deposit date: | 2018-06-12 | Release date: | 2018-11-21 | Last modified: | 2018-12-12 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structure of heme A synthase fromBacillus subtilis. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
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6AIR
| High resolution structure of perdeuterated high-potential iron-sulfur protein | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Hanazono, Y, Takeda, K, Miki, K. | Deposit date: | 2018-08-24 | Release date: | 2019-08-21 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.85 Å) | Cite: | Characterization of perdeuterated high-potential iron-sulfur protein with high-resolution X-ray crystallography. Proteins, 88, 2020
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1Q2V
| Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form) | Descriptor: | SULFATE ION, Thermosome alpha subunit | Authors: | Shomura, Y, Yoshida, T, Iizuka, R, Yohda, M, Maruyama, T, Miki, K. | Deposit date: | 2003-07-26 | Release date: | 2004-01-27 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol., 335, 2004
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1Z1F
| Crystal structure of stilbene synthase from Arachis hypogaea (resveratrol-bound form) | Descriptor: | CITRIC ACID, RESVERATROL, stilbene synthase | Authors: | Shomura, Y, Torayama, I, Suh, D.Y, Xiang, T, Kita, A, Sankawa, U, Miki, K. | Deposit date: | 2005-03-03 | Release date: | 2005-08-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal structure of stilbene synthase from Arachis hypogaea Proteins, 60, 2005
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1Z1E
| Crystal structure of stilbene synthase from Arachis hypogaea | Descriptor: | CITRIC ACID, stilbene synthase | Authors: | Shomura, Y, Torayama, I, Suh, D.Y, Xiang, T, Kita, A, Sankawa, U, Miki, K. | Deposit date: | 2005-03-03 | Release date: | 2005-08-30 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of stilbene synthase from Arachis hypogaea Proteins, 60, 2005
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1QGI
| CHITOSANASE FROM BACILLUS CIRCULANS | Descriptor: | 2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-amino-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, PROTEIN (CHITOSANASE), SULFATE ION | Authors: | Saito, J, Kita, A, Higuchi, Y, Nagata, Y, Ando, A, Miki, K. | Deposit date: | 1999-04-28 | Release date: | 1999-10-25 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of chitosanase from Bacillus circulans MH-K1 at 1.6-A resolution and its substrate recognition mechanism. J.Biol.Chem., 274, 1999
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1QSW
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1Q3S
| Crystal structure of the chaperonin from Thermococcus strain KS-1 (FormIII crystal complexed with ADP) | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Thermosome alpha subunit | Authors: | Shomura, Y, Yoshida, T, Iizuka, R, Maruyama, T, Yohda, M, Miki, K. | Deposit date: | 2003-07-31 | Release date: | 2004-01-27 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol., 335, 2004
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1Q3R
| Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant) | Descriptor: | SULFATE ION, Thermosome alpha subunit | Authors: | Shomura, Y, Yoshida, T, Iizuka, R, Maruyama, T, Yohda, M, Miki, K. | Deposit date: | 2003-07-31 | Release date: | 2004-01-27 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (2.9 Å) | Cite: | Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol., 335, 2004
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1Q3Q
| Crystal structure of the chaperonin from Thermococcus strain KS-1 (two-point mutant complexed with AMP-PNP) | Descriptor: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Thermosome alpha subunit | Authors: | Shomura, Y, Yoshida, T, Iizuka, R, Maruyama, T, Yohda, M, Miki, K. | Deposit date: | 2003-07-31 | Release date: | 2004-01-27 | Last modified: | 2023-08-16 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol., 335, 2004
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2B3R
| Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2 | Descriptor: | Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide, SULFATE ION | Authors: | Liu, L, Song, X, He, D, Komma, C, Kita, A, Verbasius, J.V, Bellamy, H, Miki, K, Czech, M.P, Zhou, G.W. | Deposit date: | 2005-09-20 | Release date: | 2005-12-13 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha. J.Biol.Chem., 281, 2006
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5YO8
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7BXV
| 11A1 antibody-peptide complex | Descriptor: | 1,2-ETHANEDIOL, Fab of the 11A1 antibody H chain, Fab of the 11A1 antibody L chain, ... | Authors: | Irie, K, Irie, Y, Kita, A, Miki, K. | Deposit date: | 2020-04-21 | Release date: | 2021-04-21 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | APOE epsilon 4 allele advances the age-dependent decline of amyloid beta clearance in the human cortex. Biorxiv, 2022
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2D05
| Chitosanase From Bacillus circulans mutant K218P | Descriptor: | Chitosanase, SULFATE ION | Authors: | Fukamizo, T, Amano, S, Yamaguchi, K, Yoshikawa, T, Katsumi, T, Saito, J, Suzuki, M, Miki, K, Nagata, Y, Ando, A. | Deposit date: | 2005-07-25 | Release date: | 2005-12-06 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Bacillus circulans MH-K1 Chitosanase: Amino Acid Residues Responsible for Substrate Binding J.Biochem.(Tokyo), 138, 2005
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7VLE
| Oxy-deoxy intermediate of V2 hemoglobin at 55% oxygen saturation | Descriptor: | Extracellular A1 globin, Extracellular A2 globin, Extracellular B1 globin, ... | Authors: | Numoto, N, Onoda, S, Kawano, Y, Okumura, H, Baba, S, Fukumori, Y, Miki, K, Ito, N. | Deposit date: | 2021-10-02 | Release date: | 2022-05-18 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structures of oxygen dissociation intermediates of 400 kDa V2 hemoglobin provide coarse snapshots of the protein allostery. Biophys Physicobio., 19, 2022
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