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5F7B
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BU of 5f7b by Molmil
Resting state structure of CuNiR form Alcaligenes faecalis determined at 293 K
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-12-07
Release date:2016-03-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4I
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BU of 5d4i by Molmil
Intact nitrite complex of a copper nitrite reductase determined by serial femtosecond crystallography
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, NITRITE ION
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSD
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BU of 4ysd by Molmil
Room temperature structure of copper nitrite reductase from Geobacillus thermodenitrificans
Descriptor: ACETIC ACID, COPPER (II) ION, Nitrite reductase
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSQ
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BU of 4ysq by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.38 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YST
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BU of 4yst by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 24.9 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSP
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BU of 4ysp by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 8.32 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diedrichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
5J7A
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BU of 5j7a by Molmil
Bacteriorhodopsin ground state structure obtained with Serial Femtosecond Crystallography
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL
Authors:Nogly, P, Panneels, V, Nelson, G, Gati, C, Kimura, T, Milne, C, Milathianaki, D, Kubo, M, Wu, W, Conrad, C, Coe, J, Bean, R, Zhao, Y, Bath, P, Dods, R, Harimoorthy, R, Beyerlein, K.R, Rheinberger, J, James, D, DePonte, D, Li, C, Sala, L, Williams, G, Hunter, M, Koglin, J.E, Berntsen, P, Nango, E, Iwata, S, Chapman, H.N, Fromme, P, Frank, M, Abela, R, Boutet, S, Barty, A, White, T.A, Weierstall, U, Spence, J, Neutze, R, Schertler, G, Standfuss, J.
Deposit date:2016-04-06
Release date:2016-08-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography.
Nat Commun, 7, 2016
4YSA
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BU of 4ysa by Molmil
Completely oxidized structure of copper nitrite reductase from Geobacillus thermodenitrificans
Descriptor: COPPER (II) ION, Nitrite reductase, SODIUM ION
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSO
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BU of 4yso by Molmil
Copper nitrite reductase from Geobacillus thermodenitrificans - 0.064 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSS
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BU of 4yss by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.7 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diedrichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSU
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BU of 4ysu by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 25.0 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSC
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BU of 4ysc by Molmil
Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis
Descriptor: CHLORIDE ION, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSR
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BU of 4ysr by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.6 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSE
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BU of 4yse by Molmil
High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
8WZR
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BU of 8wzr by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 100 ns after photoexcitation at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-02
Release date:2024-09-04
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8K65
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BU of 8k65 by Molmil
Serial femtosecond crystallography structure of CO bound ba3- type cytochrome c oxidase without pump laser irradiation
Descriptor: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, CARBON MONOXIDE, COPPER (II) ION, ...
Authors:Safari, C, Ghosh, S, Andersson, R, Johannesson, J, Donoso, A.V, Bath, P, Zoric, D, Sandelin, E, Nango, E, Tanaka, R, Iwata, S, Neutze, R, Branden, G.
Deposit date:2023-07-25
Release date:2023-11-15
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Time-resolved serial crystallography to track the dynamics of carbon monoxide in the active site of cytochrome c oxidase.
Sci Adv, 9, 2023
4YOP
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BU of 4yop by Molmil
CRYSTAL STRUCTURE OF HEN EGG-WHITE LYSOZYME
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Sugahara, M, Nakane, T, Suzuki, M, Nango, E.
Deposit date:2015-03-12
Release date:2015-12-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Acta Crystallogr.,Sect.D, 71, 2015
8WZV
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BU of 8wzv by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation with 40 microJoules laser intensity at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-02
Release date:2024-07-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZF
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BU of 8wzf by Molmil
Dark state SFX structure of hen egg white lysozyme microcrystals immobilized with a Mn carbonyl complex at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-01
Release date:2024-07-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZT
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BU of 8wzt by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 1 microsecond after photoexcitation at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-02
Release date:2024-07-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8WZG
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BU of 8wzg by Molmil
SFX structure of an Mn-carbonyl complex immobilized in hen egg white lysozyme microcrystals, 10 ns after photoexcitation at RT.
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION, ...
Authors:Maity, B, Shoji, M, Luo, F, Nakane, T, Abe, S, Owada, S, Kang, J, Tono, K, Tanaka, R, Thuc, T.T, Kojima, M, Hishikawa, Y, Tanaka, J, Tian, J, Noya, H, Nakasuji, Y, Asanuma, A, Yao, X, Iwata, S, Shigeta, Y, Nango, E, Ueno, T.
Deposit date:2023-11-01
Release date:2024-07-31
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Real-time observation of a metal complex-driven reaction intermediate using a porous protein crystal and serial femtosecond crystallography.
Nat Commun, 15, 2024
8Z1J
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BU of 8z1j by Molmil
SFX structure of dark adapted CraCRY
Descriptor: Animal-like cryptochrome, CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Maestre-Reyna, M, Hosokawa, Y, Wang, P.-H, Saft, M, Caramello, N, Engilberge, S, Franz-Badur, S, Ngura Putu, E.P.G, Nakamura, M, Wu, W.-J, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Yang, C.-H, Lin, W.-T, Yang, K.-C, Ban, Y, Imura, T, Kazuoka, A, Tanida, E, Owada, S, Joti, Y, Tanaka, R, Tanaka, T, Luo, F, Tono, K, Kiontke, S, Korf, L, Umena, Y, Tosha, T, Bessho, Y, Nango, E, Iwata, S, Royant, A, Tsai, M.-D, Yamamoto, J, Essen, L.-O.
Deposit date:2024-04-11
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Capturing structural intermediates in an animal-like cryptochrome photoreceptor by time-resolved crystallography.
Sci Adv, 11, 2025
8Z3L
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BU of 8z3l by Molmil
SFX structure of CraCRY 10 us after photoexcitation of the oxidized protein
Descriptor: CHLORIDE ION, Cryptochrome photoreceptor, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Maestre-Reyna, M, Hosokawa, Y, Wang, P.-H, Saft, M, Caramello, N, Engilberge, S, Franz-Badur, S, Ngura Putu, E.P.G, Nakamura, M, Wu, W.-J, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Yang, C.-H, Lin, W.-T, Yang, K.-C, Ban, Y, Imura, T, Kazuoka, A, Tanida, E, Owada, S, Joti, Y, Tanaka, R, Tanaka, T, Luo, F, Tono, K, Kiontke, S, Korf, L, Umena, Y, Tosha, T, Bessho, Y, Nango, E, Iwata, S, Royant, A, Tsai, M.-D, Yamamoto, J, Essen, L.-O.
Deposit date:2024-04-15
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Capturing structural intermediates in an animal-like cryptochrome photoreceptor by time-resolved crystallography.
Sci Adv, 11, 2025
8Z3X
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BU of 8z3x by Molmil
SFX structure of CraCRY 30 us after photoexcitation of the oxidized protein
Descriptor: CHLORIDE ION, Cryptochrome photoreceptor, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Maestre-Reyna, M, Hosokawa, Y, Wang, P.-H, Saft, M, Caramello, N, Engilberge, S, Franz-Badur, S, Ngura Putu, E.P.G, Nakamura, M, Wu, W.-J, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Yang, C.-H, Lin, W.-T, Yang, K.-C, Ban, Y, Imura, T, Kazuoka, A, Tanida, E, Owada, S, Joti, Y, Tanaka, R, Tanaka, T, Luo, F, Tono, K, Kiontke, S, Korf, L, Umena, Y, Tosha, T, Bessho, Y, Nango, E, Iwata, S, Royant, A, Tsai, M.-D, Yamamoto, J, Essen, L.-O.
Deposit date:2024-04-16
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Capturing structural intermediates in an animal-like cryptochrome photoreceptor by time-resolved crystallography.
Sci Adv, 11, 2025
8Z4K
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BU of 8z4k by Molmil
SFX structure of CraCRY 1 ms after photoexcitation of the oxidized protein
Descriptor: CHLORIDE ION, Cryptochrome photoreceptor, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Maestre-Reyna, M, Hosokawa, Y, Wang, P.-H, Saft, M, Caramello, N, Engilberge, S, Franz-Badur, S, Ngura Putu, E.P.G, Nakamura, M, Wu, W.-J, Wu, H.-Y, Lee, C.-C, Huang, W.-C, Huang, K.-F, Chang, Y.-K, Yang, C.-H, Lin, W.-T, Yang, K.-C, Ban, Y, Imura, T, Kazuoka, A, Tanida, E, Owada, S, Joti, Y, Tanaka, R, Tanaka, T, Luo, F, Tono, K, Kiontke, S, Korf, L, Umena, Y, Tosha, T, Bessho, Y, Nango, E, Iwata, S, Royant, A, Tsai, M.-D, Yamamoto, J, Essen, L.-O.
Deposit date:2024-04-17
Release date:2025-05-14
Last modified:2025-05-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Capturing structural intermediates in an animal-like cryptochrome photoreceptor by time-resolved crystallography.
Sci Adv, 11, 2025

238582

数据于2025-07-09公开中

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