8JJE
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![BU of 8jje by Molmil](/molmil-images/mine/8jje) | RBD of SARS-CoV2 spike protein with ACE2 decoy | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2, ... | Authors: | Kishikawa, J, Hirose, M, Kato, T, Okamoto, T. | Deposit date: | 2023-05-30 | Release date: | 2023-12-27 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | An inhaled ACE2 decoy confers protection against SARS-CoV-2 infection in preclinical models. Sci Transl Med, 15, 2023
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6LY8
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![BU of 6ly8 by Molmil](/molmil-images/mine/6ly8) | V/A-ATPase from Thermus thermophilus, the soluble domain, including V1, d, two EG stalks, and N-terminal domain of a-subunit. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2020-02-13 | Release date: | 2020-09-09 | Last modified: | 2020-09-30 | Method: | ELECTRON MICROSCOPY (3.5 Å) | Cite: | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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6LY9
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![BU of 6ly9 by Molmil](/molmil-images/mine/6ly9) | The membrane-embedded Vo domain of V/A-ATPase from Thermus thermophilus | Descriptor: | V-type ATP synthase subunit C, V-type ATP synthase subunit E, V-type ATP synthase subunit I, ... | Authors: | Kishikawa, J, Nakanishi, A, Furuta, A, Kato, T, Namba, K, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2020-02-13 | Release date: | 2020-09-09 | Last modified: | 2020-09-30 | Method: | ELECTRON MICROSCOPY (3.93 Å) | Cite: | Mechanical inhibition of isolated V o from V/A-ATPase for proton conductance. Elife, 9, 2020
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8GQY
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![BU of 8gqy by Molmil](/molmil-images/mine/8gqy) | CryoEM structure of pentameric MotA from Aquifex aeolicus | Descriptor: | Motility protein A | Authors: | Nishikino, T, Takekawa, N, Kishikawa, J, Hirose, M, Onoe, S, Kato, T, Imada, K. | Deposit date: | 2022-08-31 | Release date: | 2022-10-26 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structure of MotA, a flagellar stator protein, from hyperthermophile. Biochem.Biophys.Res.Commun., 631, 2022
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8GXX
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![BU of 8gxx by Molmil](/molmil-images/mine/8gxx) | 3 nucleotide-bound V1EG of V/A-ATPase from Thermus thermophilus. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXY
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![BU of 8gxy by Molmil](/molmil-images/mine/8gxy) | 2 sulfate-bound V1EG of V/A-ATPase from Thermus thermophilus. | Descriptor: | SULFATE ION, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (2.8 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXU
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![BU of 8gxu by Molmil](/molmil-images/mine/8gxu) | 1 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, SULFATE ION, V-type ATP synthase alpha chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (2.5 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXZ
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![BU of 8gxz by Molmil](/molmil-images/mine/8gxz) | 1 sulfate and 1 ATP bound V1EG of V/A-ATPase from Thermus thermophilus. | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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8GXW
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![BU of 8gxw by Molmil](/molmil-images/mine/8gxw) | 2 ATP-bound V1EG of V/A-ATPase from Thermus thermophilus | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, SULFATE ION, ... | Authors: | Nakanishi, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-09-21 | Release date: | 2023-01-25 | Last modified: | 2024-07-03 | Method: | ELECTRON MICROSCOPY (2.7 Å) | Cite: | Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding. J.Biol.Chem., 299, 2023
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5Y60
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![BU of 5y60 by Molmil](/molmil-images/mine/5y60) | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 3. | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2017-08-10 | Release date: | 2018-01-17 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (7.5 Å) | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
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5Y5Y
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![BU of 5y5y by Molmil](/molmil-images/mine/5y5y) | V/A-type ATPase/synthase from Thermus thermophilus, peripheral domain, rotational state 1 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2017-08-10 | Release date: | 2018-01-24 | Last modified: | 2019-11-06 | Method: | ELECTRON MICROSCOPY (4.7 Å) | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
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5Y5X
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![BU of 5y5x by Molmil](/molmil-images/mine/5y5x) | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 1 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2017-08-10 | Release date: | 2018-01-17 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (5 Å) | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
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5Y5Z
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![BU of 5y5z by Molmil](/molmil-images/mine/5y5z) | V/A-type ATPase/synthase from Thermus thermophilus, rotational state 2 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ... | Authors: | Nakanishi, A, Kishikawa, J, Tamakoshi, M, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2017-08-10 | Release date: | 2018-01-17 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (6.7 Å) | Cite: | Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus Nat Commun, 9, 2018
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7XKH
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![BU of 7xkh by Molmil](/molmil-images/mine/7xkh) | Nucleotide-depleted F1 domain of FoF1-ATPase from Bacillus PS3, state1 | Descriptor: | ATP synthase epsilon chain, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-19 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.1 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKO
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![BU of 7xko by Molmil](/molmil-images/mine/7xko) | F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,nucleotide depeleted | Descriptor: | ATP synthase gamma chain, ATP synthase subunit alpha, ATP synthase subunit beta, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.4 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKQ
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![BU of 7xkq by Molmil](/molmil-images/mine/7xkq) | F1 domain of FoF1-ATPase with the down form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3.3 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKR
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![BU of 7xkr by Molmil](/molmil-images/mine/7xkr) | F1 domain of FoF1-ATPase with the up form of epsilon subunit from Bacillus PS3 | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (2.6 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7XKP
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![BU of 7xkp by Molmil](/molmil-images/mine/7xkp) | F1 domain of epsilon C-terminal domain deleted FoF1 from Bacillus PS3,state1,unisite condition | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... | Authors: | Nakano, A, Kishikawa, J, Nakanishi, A, Mitsuoka, K, Yokoyama, K. | Deposit date: | 2022-04-20 | Release date: | 2022-09-21 | Last modified: | 2023-10-11 | Method: | ELECTRON MICROSCOPY (3 Å) | Cite: | Structural basis of unisite catalysis of bacterial F 0 F 1 -ATPase. Pnas Nexus, 1, 2022
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7DZY
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![BU of 7dzy by Molmil](/molmil-images/mine/7dzy) | Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490 | Descriptor: | Fab Heavy chain of enhancing antibody 2490, Fab light chain of enhancing antibody 2490, Spike glycoprotein | Authors: | Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H. | Deposit date: | 2021-01-26 | Release date: | 2021-06-02 | Last modified: | 2024-06-05 | Method: | ELECTRON MICROSCOPY (3.6 Å) | Cite: | An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021
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7DZX
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![BU of 7dzx by Molmil](/molmil-images/mine/7dzx) | Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2 | Descriptor: | Fab Heavy chain of enhancing antibody, Fab light chain of enhancing antibody, Spike glycoprotein | Authors: | Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H. | Deposit date: | 2021-01-26 | Release date: | 2021-06-02 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3.53 Å) | Cite: | An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021
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7DZW
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![BU of 7dzw by Molmil](/molmil-images/mine/7dzw) | Apo spike protein from SARS-CoV2 | Descriptor: | Spike glycoprotein | Authors: | Liu, Y, Soh, W.T, Li, S, Kishikawa, J, Hirose, M, Kato, T, Standley, D, Okada, M, Arase, H. | Deposit date: | 2021-01-26 | Release date: | 2021-06-02 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (3.45 Å) | Cite: | An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by antibodies. Cell, 184, 2021
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