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6BI8
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BU of 6bi8 by Molmil
X-ray structure of MERS coronavirus papain-like protease in complex with human ISG15
Descriptor: 1,2-ETHANEDIOL, CITRIC ACID, GLYCEROL, ...
Authors:Clasman, J.C, Mesecar, A.D.
Deposit date:2017-11-01
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.291 Å)
Cite:Decoupling deISGylating and deubiquitinating activities of the MERS virus papain-like protease.
Antiviral Res., 174, 2020
4Z4S
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BU of 4z4s by Molmil
Crystal structure of GII.10 P domain in complex with 150mM fucose
Descriptor: 1,2-ETHANEDIOL, Capsid protein, NITRATE ION, ...
Authors:Koromyslova, A.D, Leuthold, M.M, Hansman, G.S.
Deposit date:2015-04-02
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The sweet quartet: Binding of fucose to the norovirus capsid.
Virology, 483, 2015
4Z4V
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BU of 4z4v by Molmil
Crystal structure of GII.10 P domain in complex with 19mM fucose
Descriptor: 1,2-ETHANEDIOL, Capsid protein, NITRATE ION, ...
Authors:Koromyslova, A.D, Leuthold, M.M, Hansman, G.S.
Deposit date:2015-04-02
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The sweet quartet: Binding of fucose to the norovirus capsid.
Virology, 483, 2015
6BIB
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BU of 6bib by Molmil
1.95 A resolution structure of Norovirus 3CL protease in complex with a triazole-based macrocyclic inhibitor
Descriptor: 3C-like protease, benzyl [(9S,12S,15S)-12-(cyclohexylmethyl)-9-(hydroxymethyl)-6,11,14-trioxo-1,5,10,13,18,19-hexaazabicyclo[15.2.1]icosa-17(20),18-dien-15-yl]carbamate
Authors:Lovell, S, Battaile, K.P, Mehzabeen, N, Kankanamalage, A.C.G, Weerawarna, P.M, Rathnayake, A.D, Kim, Y, Chang, K.O, Groutas, W.C.
Deposit date:2017-11-01
Release date:2018-11-07
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Putative structural rearrangements associated with the interaction of macrocyclic inhibitors with norovirus 3CL protease.
Proteins, 87, 2019
1BDN
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BU of 1bdn by Molmil
CRYSTAL LATTICE PACKING IS IMPORTANT IN DETERMINING THE BEND OF A DNA DODECAMER CONTAINING AN ADENINE TRACT
Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*TP*TP*TP*GP*CP*G)-3'), MAGNESIUM ION
Authors:DiGabriele, A.D, Sanderson, M.R, Steitz, T.A.
Deposit date:1989-07-25
Release date:1991-04-15
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal lattice packing is important in determining the bend of a DNA dodecamer containing an adenine tract.
Proc.Natl.Acad.Sci.USA, 86, 1989
4BWZ
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BU of 4bwz by Molmil
Crystal structure of the sodium proton antiporter, NapA
Descriptor: NA(+)/H(+) ANTIPORTER, ZINC ION
Authors:Lee, C, Drew, D, Cameron, A.D.
Deposit date:2013-07-05
Release date:2013-08-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.984 Å)
Cite:A two-domain elevator mechanism for sodium/proton antiport.
Nature, 501, 2013
4YPT
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BU of 4ypt by Molmil
X-ray structural of three tandemly linked domains of nsp3 from murine hepatitis virus at 2.60 Angstroms resolution
Descriptor: GLYCEROL, Replicase polyprotein 1ab, ZINC ION
Authors:Chen, Y, Savinov, S.N, Mielech, A.M, Cao, T, Baker, S.C, Mesecar, A.D.
Deposit date:2015-03-13
Release date:2015-08-26
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.6009 Å)
Cite:X-ray Structural and Functional Studies of the Three Tandemly Linked Domains of Non-structural Protein 3 (nsp3) from Murine Hepatitis Virus Reveal Conserved Functions.
J.Biol.Chem., 290, 2015
4C0S
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BU of 4c0s by Molmil
Mammalian translation elongation factor eEF1A2
Descriptor: ELONGATION FACTOR 1-ALPHA 2, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Crepin, T, Shalak, V.F, Yaremchuk, A.D, Vlasenko, D.O, McCarthy, A.A, Negrutskii, B.S, Tukalo, M.A, El'skaya, A.V.
Deposit date:2013-08-07
Release date:2014-08-27
Last modified:2017-01-25
Method:X-RAY DIFFRACTION (2.703 Å)
Cite:Mammalian Translation Elongation Factor Eef1A2: X-Ray Structure and New Features of Gdp/GTP Exchange Mechanism in Higher Eukaryotes
Nucleic Acids Res., 42, 2014
4WEL
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BU of 4wel by Molmil
Crystal structure of Pseudomonas aeruginosa PBP3 with SMC-3176
Descriptor: (3S,4S,7Z)-7-(2-amino-1,3-thiazol-4-yl)-4-formyl-1-[({3-(5-hydroxy-4-oxo-3,4-dihydropyridin-2-yl)-4-[3-(methylsulfonyl)propyl]-5-oxo-4,5-dihydro-1H-1,2,4-triazol-1-yl}sulfonyl)amino]-3,10,10-trimethyl-1,6-dioxo-9-oxa-2,5,8-triazaundec-7-en-11-oic acid, Penicillin-binding protein 3
Authors:Ferguson, A.D.
Deposit date:2014-09-10
Release date:2015-04-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:SAR and Structural Analysis of Siderophore-Conjugated Monocarbam Inhibitors of Pseudomonas aeruginosa PBP3.
Acs Med.Chem.Lett., 6, 2015
6CC9
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BU of 6cc9 by Molmil
NMR data-driven model of GTPase KRas-GMPPNP:Cmpd2 complex tethered to a nanodisc
Descriptor: (2R,4S)-4-[(5-bromo-1H-indole-3-carbonyl)amino]-2-[(4-chlorophenyl)methyl]piperidin-1-ium, 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Apolipoprotein A-I, ...
Authors:Fang, Z, Marshall, C.B, Nishikawa, T, Gossert, A.D, Jansen, J.M, Jahnke, W, Ikura, M.
Deposit date:2018-02-06
Release date:2018-09-05
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Inhibition of K-RAS4B by a Unique Mechanism of Action: Stabilizing Membrane-Dependent Occlusion of the Effector-Binding Site.
Cell Chem Biol, 25, 2018
4Z4W
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BU of 4z4w by Molmil
Crystal structure of GII.10 P domain in complex with 4.7mM fucose
Descriptor: 1,2-ETHANEDIOL, Capsid protein, beta-L-fucopyranose
Authors:Koromyslova, A.D, Leuthold, M.M, Hansman, G.S.
Deposit date:2015-04-02
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The sweet quartet: Binding of fucose to the norovirus capsid.
Virology, 483, 2015
6CF2
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BU of 6cf2 by Molmil
Crystal structure of HIV-1 Rev (residues 1-93)-RNA aptamer complex
Descriptor: Anti-Rev Antibody, heavy chain, light chain, ...
Authors:Eren, E, Dearborn, A.D, Wingfield, P.T.
Deposit date:2018-02-13
Release date:2018-07-25
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure of an RNA Aptamer that Can Inhibit HIV-1 by Blocking Rev-Cognate RNA (RRE) Binding and Rev-Rev Association.
Structure, 26, 2018
4ERJ
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BU of 4erj by Molmil
Crystal structure of the lysine riboswitch bound to a 6-aminocaproic acid
Descriptor: 6-AMINOHEXANOIC ACID, Lysine riboswitch RNA
Authors:Garst, A.D, Porter, E, Batey, R.T.
Deposit date:2012-04-20
Release date:2012-07-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:Insights into the regulatory landscape of the lysine riboswitch.
J.Mol.Biol., 423, 2012
6B0X
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BU of 6b0x by Molmil
Capsid protein and C-terminal part of scaffolding protein in the Staphylococcus aureus phage 80alpha procapsid
Descriptor: Major head protein, Scaffold protein
Authors:Kizziah, J.L, Dearborn, A.D, Dokland, T.
Deposit date:2017-09-15
Release date:2017-10-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
Elife, 6, 2017
6B3E
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BU of 6b3e by Molmil
Crystal structure of human CDK12/CyclinK in complex with an inhibitor
Descriptor: 1,2-ETHANEDIOL, 2-[(2S)-1-(6-{[(4,5-difluoro-1H-benzimidazol-2-yl)methyl]amino}-9-ethyl-9H-purin-2-yl)piperidin-2-yl]ethan-1-ol, Cyclin-K, ...
Authors:Ferguson, A.D.
Deposit date:2017-09-21
Release date:2017-12-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structure-Based Design of Selective Noncovalent CDK12 Inhibitors.
ChemMedChem, 13, 2018
6B23
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BU of 6b23 by Molmil
Capsid protein and C-terminal part of CpmB protein in the Staphylococcus aureus pathogenicity island 1 80alpha-derived procapsid
Descriptor: Capsid morphogenesis B protein, Major head protein
Authors:Kizziah, J.L, Dearborn, A.D, Dokland, T.
Deposit date:2017-09-19
Release date:2017-10-18
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Competing scaffolding proteins determine capsid size during mobilization ofStaphylococcus aureuspathogenicity islands.
Elife, 6, 2017
4Z4Z
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BU of 4z4z by Molmil
Crystal structure of GII.10 P domain in complex with 30mM B antigen (trisaccharide)
Descriptor: 1,2-ETHANEDIOL, Capsid protein, alpha-L-fucopyranose-(1-2)-[alpha-D-galactopyranose-(1-3)]alpha-D-galactopyranose
Authors:Leuthold, M.M, Koromyslova, A.D, Hansman, G.S.
Deposit date:2015-04-02
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:The sweet quartet: Binding of fucose to the norovirus capsid.
Virology, 483, 2015
4YZF
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BU of 4yzf by Molmil
Crystal structure of the anion exchanger domain of human erythrocyte Band 3
Descriptor: 2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}, Band 3 anion transport protein, FAB fragment of Immunoglobulin (IgG) molecule
Authors:Alguel, Y, Arakawa, T, Yugiri, T.K, Iwanari, H, Hatae, H, Iwata, M, Abe, Y, Hino, T, Suno, C.I, Kuma, H, Kang, D, Murata, T, Hamakubo, T, Cameron, A.D, Kobayashi, T, Hamasaki, N, Iwata, S.
Deposit date:2015-03-25
Release date:2015-11-04
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the anion exchanger domain of human erythrocyte band 3.
Science, 350, 2015
4Z4U
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BU of 4z4u by Molmil
Crystal structure of GII.10 P domain in complex with 37.5mM fucose
Descriptor: 1,2-ETHANEDIOL, Capsid protein, beta-L-fucopyranose
Authors:Koromyslova, A.D, Leuthold, M.M, Hansman, G.S.
Deposit date:2015-04-02
Release date:2015-05-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The sweet quartet: Binding of fucose to the norovirus capsid.
Virology, 483, 2015
1B8Y
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BU of 1b8y by Molmil
X-RAY STRUCTURE OF HUMAN STROMELYSIN CATALYTIC DOMAIN COMPLEXED WITH NON-PEPTIDE INHIBITORS: IMPLICATIONS FOR INHIBITOR SELECTIVITY
Descriptor: CALCIUM ION, PROTEIN (STROMELYSIN-1), SULFATE ION, ...
Authors:Pavlovsky, A.G, Williams, M.G, Ye, Q.-Z, Ortwine, D.F, Purchase II, C.F, White, A.D, Dhanaraj, V, Roth, B.D, Johnson, L.L, Hupe, D, Humblet, C, Blundell, T.L.
Deposit date:1999-02-03
Release date:1999-08-31
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:X-ray structure of human stromelysin catalytic domain complexed with nonpeptide inhibitors: implications for inhibitor selectivity.
Protein Sci., 8, 1999
4DTK
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BU of 4dtk by Molmil
Novel and selective pan-PIM kinase inhibitor
Descriptor: (5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione, 1,2-ETHANEDIOL, SULFATE ION, ...
Authors:Ferguson, A.D.
Deposit date:2012-02-21
Release date:2012-07-11
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Discovery of novel benzylidene-1,3-thiazolidine-2,4-diones as potent and selective inhibitors of the PIM-1, PIM-2, and PIM-3 protein kinases.
Bioorg.Med.Chem.Lett., 22, 2012
1A87
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BU of 1a87 by Molmil
COLICIN N
Descriptor: COLICIN N
Authors:Vetter, I.R, Parker, M.W, Tucker, A.D, Lakey, J.H, Pattus, F, Tsernoglou, D.
Deposit date:1998-04-03
Release date:1999-04-06
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structure of a colicin N fragment suggests a model for toxicity.
Structure, 6, 1998
4D1C
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BU of 4d1c by Molmil
STRUCTURE OF MHP1, A NUCLEOBASE-CATION-SYMPORT-1 FAMILY TRANSPORTER, IN A CLOSED CONFORMATION WITH bromovinylhydantoin bound.
Descriptor: (5Z)-5-[(3-bromophenyl)methylidene]imidazolidine-2,4-dione, HYDANTOIN TRANSPORT PROTEIN, SODIUM ION
Authors:Weyand, S, Brueckner, F, Geng, T, Drew, D, Iwata, S, Henderson, P.J.F, Cameron, A.D.
Deposit date:2014-05-01
Release date:2014-07-02
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Molecular Mechanism of Ligand Recognition by Membrane Transport Protein, Mhp1.
Embo J., 33, 2014
1BWS
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BU of 1bws by Molmil
CRYSTAL STRUCTURE OF GDP-4-KETO-6-DEOXY-D-MANNOSE EPIMERASE/REDUCTASE FROM ESCHERICHIA COLI A KEY ENZYME IN THE BIOSYNTHESIS OF GDP-L-FUCOSE
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTEIN (GDP-4-KETO-6-DEOXY-D-MANNOSE EPIMERASE/REDUCTASE)
Authors:Rizzi, M, Tonetti, M, Flora, A.D, Bolognesi, M.
Deposit date:1998-09-25
Release date:1999-01-13
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:GDP-4-keto-6-deoxy-D-mannose epimerase/reductase from Escherichia coli, a key enzyme in the biosynthesis of GDP-L-fucose, displays the structural characteristics of the RED protein homology superfamily.
Structure, 6, 1998
1BXK
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BU of 1bxk by Molmil
DTDP-GLUCOSE 4,6-DEHYDRATASE FROM E. COLI
Descriptor: NICOTINAMIDE-ADENINE-DINUCLEOTIDE, PROTEIN (DTDP-GLUCOSE 4,6-DEHYDRATASE)
Authors:Thoden, J.B, Hegeman, A.D, Frey, P.A, Holden, H.M.
Deposit date:1998-10-05
Release date:1998-10-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Molecular Structure of Dtdp-Glucose 4,6-Dehydratase from E. Coli
Protein Sci.

227344

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