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3NKR
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BU of 3nkr by Molmil
Crystal structure of mouse autotaxin in complex with 22:6-LPA
Descriptor: (2R)-2-hydroxy-3-(phosphonooxy)propyl (4Z,7E,10E,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoate, 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Nishimasu, H, Ishitani, R, Mihara, E, Takagi, J, Aoki, J, Nureki, O.
Deposit date:2010-06-20
Release date:2011-01-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.704 Å)
Cite:Crystal structure of autotaxin and insight into GPCR activation by lipid mediators
Nat.Struct.Mol.Biol., 18, 2011
7VF3
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BU of 7vf3 by Molmil
Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Plexin-B1, ...
Authors:Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J.
Deposit date:2021-09-10
Release date:2022-08-17
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function.
Structure, 30, 2022
6LZ9
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BU of 6lz9 by Molmil
t8E4 antibody Fab complexed with the active form of HGF
Descriptor: Heavy chain of t8E4 Fab fragment, Hepatocyte growth factor, Light chain of t8E4 Fab fragment
Authors:Kitago, Y, Umitsu, M, Takagi, J.
Deposit date:2020-02-18
Release date:2020-03-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:t8E4 antibody Fab complexed with the active form of HGF
To Be Published
7XOL
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BU of 7xol by Molmil
Cryo-EM structure of single empty ring 2 (SER2) of GroEL-UGT1A complex at 3.2 Ang. resolution
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.26 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOS
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BU of 7xos by Molmil
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOK
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BU of 7xok by Molmil
Cryo-EM structure of double occupied ring (DOR) of GroEL-UGT1A complex at 2.7 Ang. resolution
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOQ
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BU of 7xoq by Molmil
Cryo-EM structure of occupied ring subunit 2 (OR2) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XON
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BU of 7xon by Molmil
Cryo-EM structure of empty ring subunit 1 (ER1) from single empty ring of GroEL-UGT1A complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOM
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BU of 7xom by Molmil
Cryo-EM structure of occupied ring subunit 4 (OR4) of GroEL complexed with polyalanine model of UGT1A from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL, Polyalanine model of UDP-glucuronosyltransferase 1A (UGT1A)
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOP
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BU of 7xop by Molmil
Cryo-EM structure of occupied ring subunit 1 (OR1) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOR
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BU of 7xor by Molmil
Cryo-EM structure of occupied ring subunit 3 (OR3) of GroEL from GroEL-UGT1A double occupied ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOJ
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BU of 7xoj by Molmil
Cryo-EM structure of GroEL bound to unfolded substrate (UGT1A) at 2.8 Ang. resolution (Consensus Refinement)
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (2.8 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
7XOO
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BU of 7xoo by Molmil
Cryo-EM structure of empty ring subunit 2 (ER2) from GroEL-UGT1A single empty ring complex
Descriptor: Chaperonin GroEL
Authors:Stapleton, K, Takagi, J, Mizohata, E.
Deposit date:2022-05-01
Release date:2023-05-03
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Unmasking GroEL: Structure, dynamics, and substrate binding revealed by single-particle cryo-EM
To Be Published
4YO0
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BU of 4yo0 by Molmil
Crystal structure of monoclonal anti-human podoplanin antibody NZ-1 with bound PA peptide
Descriptor: 1,2-ETHANEDIOL, Heavy chain of antigen binding fragment, Fab, ...
Authors:Fujii, Y, Kitago, Y, Arimori, T, Takagi, J.
Deposit date:2015-03-11
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
4YNY
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BU of 4yny by Molmil
Crystal structure of monoclonal anti-human podoplanin antibody NZ-1
Descriptor: Heavy chain of antigen binding fragment, Fab, Light chain of antigen binding fragment
Authors:Fujii, Y, Kitago, Y, Arimori, T, Takagi, J.
Deposit date:2015-03-11
Release date:2016-03-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.584 Å)
Cite:Tailored placement of a turn-forming PA tag into the structured domain of a protein to probe its conformational state
J.Cell.Sci., 129, 2016
5B4Y
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BU of 5b4y by Molmil
Crystal structure of the LA12 fragment of ApoER2
Descriptor: CALCIUM ION, Low-density lipoprotein receptor-related protein 8
Authors:Nogi, T, Tabata, S, Hirai, H, Yasui, N, Takagi, J.
Deposit date:2016-04-20
Release date:2017-04-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
To Be Published
5AUM
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BU of 5aum by Molmil
Crystal structure of a Fab fragment with the ligand peptide
Descriptor: Heavy chain of Fab fragment, Light chain of Fab fragment, ZINC ION, ...
Authors:Kitago, Y, Takagi, J.
Deposit date:2015-04-30
Release date:2016-08-10
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure of a Fab fragment with the ligand peptide
To Be Published
5B4W
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BU of 5b4w by Molmil
Crystal structure of Plexin inhibitor complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, Synthesized cyclic peptide
Authors:Matsunaga, Y, Kitago, Y, Arimori, T, Takagi, J.
Deposit date:2016-04-19
Release date:2016-12-28
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Allosteric Inhibition of a Semaphorin 4D Receptor Plexin B1 by a High-Affinity Macrocyclic Peptide
Cell Chem Biol, 23, 2016
5B4X
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BU of 5b4x by Molmil
Crystal structure of the ApoER2 ectodomain in complex with the Reelin R56 fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Low density lipoprotein receptor-related protein 8, ...
Authors:Yasui, N, Hirai, H, Yamashita, K, Takagi, J, Nogi, T.
Deposit date:2016-04-20
Release date:2017-04-26
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Crystal structure of the ectodomain from a LDLR close homologue in complex with its physiological ligand.
To Be Published
2E26
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BU of 2e26 by Molmil
Crystal structure of two repeat fragment of reelin
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ACETATE ION, ...
Authors:Yasui, N, Nogi, T, Kitao, T, Takagi, J.
Deposit date:2006-11-08
Release date:2007-05-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors.
Proc.Natl.Acad.Sci.Usa, 104, 2007
6JI1
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BU of 6ji1 by Molmil
Tetrameric PepTSo2 incorporated in salipro nano particle
Descriptor: Proton:oligopeptide symporter POT family
Authors:Kawamoto, A, Matoba, K, Takagi, J.
Deposit date:2019-02-19
Release date:2019-05-15
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Structural basis for oligomerization of the prokaryotic peptide transporter PepTSo2.
Acta Crystallogr.,Sect.F, 75, 2019
6LCS
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BU of 6lcs by Molmil
Crystal structure of 73MuL9 Fv-clasp fragment in complex with GA-pyridine analogue
Descriptor: (2~{S})-6-[4-(hydroxymethyl)-3-oxidanyl-pyridin-1-ium-1-yl]-2-(phenylmethoxycarbonylamino)hexanoic acid, PHOSPHATE ION, VH-SARAH, ...
Authors:Nakamura, T, Takagi, J, Yamagata, Y, Morioka, H.
Deposit date:2019-11-19
Release date:2020-11-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Molecular recognition of a single-chain Fv antibody specific for GA-pyridine, an advanced glycation end-product (AGE), elucidated using biophysical techniques and synthetic antigen analogues.
J.Biochem., 170, 2021
6LZ4
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BU of 6lz4 by Molmil
Crystal structure of PMab-1 Fv-clasp fragment with its antigen peptide
Descriptor: MAP peptide, PMab-1 VH(S112C)-SARAH Chimera, PMab-1 VL-SARAH(S37C) Chimera
Authors:Arimori, T, Takagi, J.
Deposit date:2020-02-18
Release date:2020-05-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Site-specific epitope insertion into recombinant proteins using the MAP tag system.
J.Biochem., 168, 2020
2ZOU
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BU of 2zou by Molmil
Crystal structure of human F-spondin reeler domain (fragment 2)
Descriptor: 1,2-ETHANEDIOL, Spondin-1
Authors:Nagae, M, Nogi, T, Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
2ZOT
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BU of 2zot by Molmil
Crystal structure of human F-spondin reeler domain (fragment 1)
Descriptor: Spondin-1
Authors:Nagae, M, Nogi, T, Takagi, J.
Deposit date:2008-06-07
Release date:2008-10-14
Last modified:2016-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008

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数据于2024-05-29公开中

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