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8IC1
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BU of 8ic1 by Molmil
endo-alpha-D-arabinanase EndoMA1 D51N mutant from Microbacterium arabinogalactanolyticum in complex with arabinooligosaccharides
Descriptor: (3~{a}~{S},5~{R},6~{R},6~{a}~{S})-5-(hydroxymethyl)-2,2-dimethyl-3~{a},5,6,6~{a}-tetrahydrofuro[2,3-d][1,3]dioxol-6-ol, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
Authors:Li, J, Nakashima, C, Ishiwata, A, Fujita, K, Fushinobu, S.
Deposit date:2023-02-10
Release date:2023-08-16
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Identification and characterization of endo-alpha-, exo-alpha-, and exo-beta-D-arabinofuranosidases degrading lipoarabinomannan and arabinogalactan of mycobacteria.
Nat Commun, 14, 2023
3GP7
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BU of 3gp7 by Molmil
Staphylococcal Enterotoxin B mutant N23YK97SK98S
Descriptor: Enterotoxin type B
Authors:Yanaka, S, Tanaka, Y, Tsumoto, K.
Deposit date:2009-03-23
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Contribution of the flexible loop region to the function of staphylococcal enterotoxin B
Protein Eng.Des.Sel., 23, 2010
5DCV
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BU of 5dcv by Molmil
Crystal structure of PhoRpp38-SL12M complex
Descriptor: 50S ribosomal protein L7Ae, RNA (47-MER)
Authors:Oshima, K, Tanaka, Y, Yao, M.
Deposit date:2015-08-24
Release date:2016-07-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.401 Å)
Cite:Structural basis for recognition of a kink-turn motif by an archaeal homologue of human RNase P protein Rpp38
Biochem.Biophys.Res.Commun., 474, 2016
8WSM
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BU of 8wsm by Molmil
NLRP3 NACHT domain in complex with compound 32
Descriptor: 2-[[2-methyl-5-(trifluoromethyl)phenyl]amino]-~{N}-(1,4-oxazepan-4-ylsulfonyl)-1,3-oxazole-4-carboxamide, ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Akai, S, Orita, T, Adachi, T.
Deposit date:2023-10-17
Release date:2023-11-22
Last modified:2024-01-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Discovery of Novel NLRP3 Inflammasome Inhibitors Composed of an Oxazole Scaffold Bearing an Acylsulfamide.
Acs Med.Chem.Lett., 14, 2023
1J1F
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BU of 1j1f by Molmil
Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-03
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1G
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BU of 1j1g by Molmil
Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP
Descriptor: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1
Authors:Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
Deposit date:2002-12-04
Release date:2003-05-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
7F88
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BU of 7f88 by Molmil
Crystal structure of GH19 chitinase lacking the third loop structure
Descriptor: Chitinase A
Authors:Ohnuma, T, Numata, T.
Deposit date:2021-07-01
Release date:2022-03-09
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:A conserved loop structure of GH19 chitinases assists the enzyme function from behind the core-functional region.
Glycobiology, 32, 2022
7XMH
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BU of 7xmh by Molmil
Crystal structure of a rice class IIIb chitinase, Oschib2
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Putative class III chitinase
Authors:Jun, T, Tomoya, T, Tomoyuki, N, Takayuki, O.
Deposit date:2022-04-25
Release date:2023-05-03
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Characterization of two rice GH18 chitinases belonging to family 8 of plant pathogenesis-related proteins.
Plant Sci., 326, 2023
1BK7
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BU of 1bk7 by Molmil
RIBONUCLEASE MC1 FROM THE SEEDS OF BITTER GOURD
Descriptor: PROTEIN (RIBONUCLEASE MC1)
Authors:Nakagawa, A, Tanaka, I.
Deposit date:1998-07-15
Release date:1999-07-23
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal structure of a ribonuclease from the seeds of bitter gourd (Momordica charantia) at 1.75 A resolution.
Biochim.Biophys.Acta, 1433, 1999
5XTM
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BU of 5xtm by Molmil
Crystal structure of PhoRpp38 bound to a K-turn in P12.2 helix
Descriptor: 50S ribosomal protein L7Ae, MAGNESIUM ION, RNA (47-MER)
Authors:Oshima, K, Kimura, M.
Deposit date:2017-06-20
Release date:2018-02-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5Y7M
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BU of 5y7m by Molmil
Crystal structure of PhoRpp38 bound to a K-turn in P12.1 helix
Descriptor: 50S ribosomal protein L7Ae, GUANOSINE-5'-TRIPHOSPHATE, RNA (52-MER), ...
Authors:Oshima, K, Kimura, M.
Deposit date:2017-08-01
Release date:2018-02-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.
Acta Crystallogr F Struct Biol Commun, 74, 2018
3AML
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BU of 3aml by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ACETATE ION, BETA-MERCAPTOETHANOL, ...
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
3AMK
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BU of 3amk by Molmil
Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L
Descriptor: GLYCEROL, Os06g0726400 protein, PHOSPHATE ION
Authors:Kakuta, Y, Chaen, K, Noguchi, J, Vu, N, Kimura, M.
Deposit date:2010-08-20
Release date:2011-09-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding.
Glycobiology, 21, 2011
1V7O
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BU of 1v7o by Molmil
Alanyl-tRNA synthetase editing domain homologue protein from Pyrococcus horikoshii
Descriptor: alanyl-tRNA synthetase
Authors:Okada, A, Yao, M, Sokabe, M, Tanaka, I.
Deposit date:2003-12-18
Release date:2004-01-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Molecular basis of alanine discrimination in editing site
Proc.Natl.Acad.Sci.Usa, 102, 2005
487D
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BU of 487d by Molmil
SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-ELECTRON MICROSCOPIC MAP OF THE LARGE 50S SUBUNIT AT 7.5 ANGSTROMS RESOLUTION
Descriptor: 50S ribosomal protein L1, 50S ribosomal protein L11, 50S ribosomal protein L14, ...
Authors:Brimacombe, R, Mueller, F.
Deposit date:2000-02-23
Release date:2000-04-10
Last modified:2023-06-07
Method:ELECTRON MICROSCOPY (7.5 Å)
Cite:The 3D arrangement of the 23 S and 5 S rRNA in the Escherichia coli 50 S ribosomal subunit based on a cryo-electron microscopic reconstruction at 7.5 A resolution.
J.Mol.Biol., 298, 2000
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