Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5LAL
DownloadVisualize
BU of 5lal by Molmil
Structure of Arabidopsis dirigent protein AtDIR6
Descriptor: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Dirigent protein 6, ...
Authors:Gasper, R, Kolesinski, P, Terlecka, B, Effenberger, I, Schaller, A, Hofmann, E.
Deposit date:2016-06-14
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Dirigent Protein Mode of Action Revealed by the Crystal Structure of AtDIR6.
Plant Physiol., 172, 2016
5LA3
DownloadVisualize
BU of 5la3 by Molmil
[FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant E279A
Descriptor: FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, Iron hydrogenase 1, ...
Authors:Duan, J, Esselborn, J, Hofmann, E, Winkler, M, Happe, T.
Deposit date:2016-06-13
Release date:2017-06-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Accumulating the hydride state in the catalytic cycle of [FeFe]-hydrogenases.
Nat Commun, 8, 2017
1QFG
DownloadVisualize
BU of 1qfg by Molmil
E. COLI FERRIC HYDROXAMATE RECEPTOR (FHUA)
Descriptor: 3-HYDROXY-TETRADECANOIC ACID, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, DIPHOSPHATE, ...
Authors:Ferguson, A.D, Welte, W, Hofmann, E, Lindner, B, Holst, O, Coulton, J.W, Diederichs, K.
Deposit date:1999-04-10
Release date:2000-07-26
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A conserved structural motif for lipopolysaccharide recognition by procaryotic and eucaryotic proteins.
Structure Fold.Des., 8, 2000
2C9E
DownloadVisualize
BU of 2c9e by Molmil
Peridinin-chlorophyll a protein, high-salt form
Descriptor: CHLOROPHYLL A, DIGALACTOSYL DIACYL GLYCEROL (DGDG), MAGNESIUM ION, ...
Authors:Schulte, T, Sharples, F.P, Hiller, R.G, Hofmann, E.
Deposit date:2005-12-09
Release date:2007-02-20
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:X-Ray Structure of the High-Salt Form of the Peridinin-Chlorophyll A-Protein from the Dinoflagellate Amphidinium Carterae: Modulation of the Spectral Properties of Pigments by the Protein Environment.
Biochemistry, 48, 2009
1QFF
DownloadVisualize
BU of 1qff by Molmil
E. COLI FERRIC HYDROXAMATE UPTAKE RECEPTOR (FHUA) IN COMPLEX WITH BOUND FERRICHROME-IRON
Descriptor: 2-AMINO-VINYL-PHOSPHATE, 3-HYDROXY-TETRADECANOIC ACID, DECYLAMINE-N,N-DIMETHYL-N-OXIDE, ...
Authors:Ferguson, A.D, Hofmann, E, Coulton, J.W, Diederichs, K, Welte, W.
Deposit date:1999-04-10
Release date:2000-07-26
Last modified:2022-12-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:A conserved structural motif for lipopolysaccharide recognition by procaryotic and eucaryotic proteins.
Structure Fold.Des., 8, 2000
2YMY
DownloadVisualize
BU of 2ymy by Molmil
Structure of the murine Nore1-Sarah domain
Descriptor: CADMIUM ION, RAS ASSOCIATION DOMAIN-CONTAINING PROTEIN 5
Authors:Makbul, C, Schwarz, D, Aruxandei, D.C, Wolf, E, Hofmann, E, Herrmann, C.
Deposit date:2012-10-10
Release date:2013-03-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structural and Thermodynamic Characterization of Nore1-Sarah: A Small, Helical Module Important in Signal Transduction Networks.
Biochemistry, 52, 2013
3IIU
DownloadVisualize
BU of 3iiu by Molmil
Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP) mutant N89L
Descriptor: (2S)-3-[(6-O-alpha-D-galactopyranosyl-beta-D-galactopyranosyl)oxy]-2-[(3Z,6Z,9Z,12Z,15Z)-octadeca-3,6,9,12,15-pentaenoyloxy]propyl (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate, CADMIUM ION, CHLORIDE ION, ...
Authors:Schulte, T, Hofmann, E.
Deposit date:2009-08-03
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy.
Proc.Natl.Acad.Sci.USA, 106, 2009
3IIS
DownloadVisualize
BU of 3iis by Molmil
Structure of the reconstituted Peridinin-Chlorophyll a-Protein (RFPCP)
Descriptor: (2S)-3-[(6-O-alpha-D-galactopyranosyl-beta-D-galactopyranosyl)oxy]-2-[(3Z,6Z,9Z,12Z,15Z)-octadeca-3,6,9,12,15-pentaenoyloxy]propyl (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate, CADMIUM ION, CHLORIDE ION, ...
Authors:Schulte, T, Hofmann, E.
Deposit date:2009-08-03
Release date:2009-11-24
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Identification of a single peridinin sensing Chl-a excitation in reconstituted PCP by crystallography and spectroscopy.
Proc.Natl.Acad.Sci.USA, 106, 2009
8PVM
DownloadVisualize
BU of 8pvm by Molmil
formaldehyde-inhibited [FeFe]-hydrogenase CpI from Clostridium pasteurianum, variant C299D
Descriptor: CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, FORMYL GROUP, ...
Authors:Duan, J, Hofmann, E, Happe, T.
Deposit date:2023-07-18
Release date:2023-11-29
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:Insights into the Molecular Mechanism of Formaldehyde Inhibition of [FeFe]-Hydrogenases.
J.Am.Chem.Soc., 145, 2023
2GMR
DownloadVisualize
BU of 2gmr by Molmil
Photosynthetic reaction center mutant from Rhodobacter sphaeroides with Asp L210 replaced with Asn
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (II) ION, ...
Authors:Stachnik, J.M, Hermes, S, Gerwert, K, Hofmann, E.
Deposit date:2006-04-07
Release date:2006-11-21
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Proton uptake in the reaction center mutant L210DN from Rhodobacter sphaeroides via protonated water molecules.
Biochemistry, 45, 2006
6TD7
DownloadVisualize
BU of 6td7 by Molmil
Structure of truncated hemoglobin THB11 from Chlamydomonas reinhardtii
Descriptor: CYANIDE ION, PROTOPORPHYRIN IX CONTAINING FE, THB11
Authors:Huwald, D, Gasper, R, Hemschemeier, A, Hofmann, E.
Deposit date:2019-11-08
Release date:2020-02-26
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Distinctive structural properties of THB11, a pentacoordinate Chlamydomonas reinhardtii truncated hemoglobin with N- and C-terminal extensions.
J.Biol.Inorg.Chem., 25, 2020
6TTL
DownloadVisualize
BU of 6ttl by Molmil
crystal structure of [FeFe]-hydrogenase CbA5H (partial) from Clostridium beijerinckii in Hinact state
Descriptor: IRON/SULFUR CLUSTER, [FeFe]-hydrogenase, dicarbonyl[bis(cyanide-kappaC)]-mu-(iminodimethanethiolatato-1kappaS:2kappaS)-mu-(oxomethylidene)diiron(2+)
Authors:Duan, J, Rutz, A, Hofmann, E, Happe, T.
Deposit date:2019-12-28
Release date:2020-12-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:A safety cap protects hydrogenase from oxygen attack.
Nat Commun, 12, 2021
8AP2
DownloadVisualize
BU of 8ap2 by Molmil
cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) at 1.39 Angstrom
Descriptor: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
Authors:Duan, J, Hofmann, E, Happe, T.
Deposit date:2022-08-09
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway.
Angew.Chem.Int.Ed.Engl., 62, 2023
8AJ6
DownloadVisualize
BU of 8aj6 by Molmil
cyanide-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI)
Descriptor: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
Authors:Duan, J, Hofmann, E, Happe, T.
Deposit date:2022-07-27
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ALN
DownloadVisualize
BU of 8aln by Molmil
CO-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI) at 1.34 Angstrom
Descriptor: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
Authors:Duan, J, Hofmann, E, Happe, T.
Deposit date:2022-08-01
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway.
Angew.Chem.Int.Ed.Engl., 62, 2023
8AIO
DownloadVisualize
BU of 8aio by Molmil
CO-bound [FeFe]-hydrogenase I from Clostridium pasteurianum (CpI)
Descriptor: Binuclear [FeFe], di(thiomethyl)amine, carbon monoxide, ...
Authors:Duan, J, Hofmann, E, Happe, T.
Deposit date:2022-07-26
Release date:2022-12-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway.
Angew.Chem.Int.Ed.Engl., 62, 2023
2WJL
DownloadVisualize
BU of 2wjl by Molmil
Bacteriorhodopsin mutant E194D
Descriptor: Bacteriorhodopsin, RETINAL
Authors:Potschies, M, Wolf, S, Freier, E, Hofmann, E, Gerwert, K.
Deposit date:2009-05-27
Release date:2010-08-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode.
Angew. Chem. Int. Ed. Engl., 49, 2010
4CQ6
DownloadVisualize
BU of 4cq6 by Molmil
The crystal structure of the allene oxide cyclase 2 from Arabidopsis thaliana with bound inhibitor - vernolic acid
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (9Z)-11-[(2R,3S)-3-pentyloxiran-2-yl]undec-9-enoic acid, ALLENE OXIDE CYCLASE 2, ...
Authors:Terlecka, B.A, Pollmann, S, Hofmann, E.
Deposit date:2014-02-11
Release date:2015-03-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The Ligand-Bound Structures of the Aoc2 from A. Thaliana and the Implications for the Catalytic Mechanism
To be Published
4CQ7
DownloadVisualize
BU of 4cq7 by Molmil
The crystal structure of the allene oxide cyclase 2 from Arabidopsis thaliana with bound product - OPDA
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, 9S,13R-12-OXOPHYTODIENOIC ACID, ALLENE OXIDE CYCLASE 2, ...
Authors:Terlecka, B.A, Pollmann, S, Hofmann, E.
Deposit date:2014-02-11
Release date:2015-03-04
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The Ligand-Bound Structures of the Aoc2 from A. Thaliana and the Implications for the Catalytic Mechanism
To be Published
2WJK
DownloadVisualize
BU of 2wjk by Molmil
Bacteriorhodopsin mutant E204D
Descriptor: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL, Bacteriorhodopsin, RETINAL
Authors:Potschies, M, Hofmann, E, Gerwert, K.
Deposit date:2009-05-27
Release date:2010-08-25
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode.
Angew. Chem. Int. Ed. Engl., 49, 2010
5BYQ
DownloadVisualize
BU of 5byq by Molmil
Semisynthetic [FeFe]-hydrogenase CpI with oxodithiolato-bridged [2Fe] cofactor
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Esselborn, J, Muraki, N, Engelbrecht, V, Hofmann, E, Kurisu, G, Happe, T.
Deposit date:2015-06-10
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.
Chem Sci, 7, 2016
5BYS
DownloadVisualize
BU of 5bys by Molmil
Semisynthetic [FeFe]-hydrogenase CpI with sulfur-dithiolato-bridged [2Fe] cofactor
Descriptor: FE2/S2 (INORGANIC) CLUSTER, IRON/SULFUR CLUSTER, Iron hydrogenase 1, ...
Authors:Esselborn, J, Muraki, N, Engelbrecht, V, Hofmann, E, Kurisu, G, Happe, T.
Deposit date:2015-06-10
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.
Chem Sci, 7, 2016
5BYR
DownloadVisualize
BU of 5byr by Molmil
Semisynthetic [FeFe]-hydrogenase CpI with propane-dithiolato-bridged [2Fe] cofactor
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, IRON/SULFUR CLUSTER, ...
Authors:Esselborn, J, Muraki, N, Engelbrecht, V, Hofmann, E, Kurisu, G, Happe, T.
Deposit date:2015-06-10
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.
Chem Sci, 7, 2016
2YJ5
DownloadVisualize
BU of 2yj5 by Molmil
Conformational changes in the catalytic domain of the CPx-ATPase CopB- B upon nucleotide binding
Descriptor: 5'-O-[(S)-hydroxy{[(R)-hydroxy({(S)-hydroxy[(1S)-1-(2-nitrophenyl)ethoxy]phosphoryl}oxy)phosphoryl]oxy}phosphoryl]adenosine, ADENOSINE-5'-TRIPHOSPHATE, COPPER-TRANSPORTING ATPASE
Authors:Voellmecke, C, Schlicker, C, Luebben, M, Hofmann, E.
Deposit date:2011-05-18
Release date:2012-05-30
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Conformational Changes in the Catalytic Domain of the Cpx-ATPase Copb-B Upon Nucleotide Binding
To be Published
2YBV
DownloadVisualize
BU of 2ybv by Molmil
STRUCTURE OF RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS
Descriptor: CHLORIDE ION, RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN, RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL SUBUNIT
Authors:Terlecka, B, Wilhelmi, V, Bialek, W, Gubernator, B, Szczepaniak, A, Hofmann, E.
Deposit date:2011-03-10
Release date:2012-03-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase from Thermosynechococcus Elongatus
To be Published

221051

数据于2024-06-12公开中

PDB statisticsPDBj update infoContact PDBjnumon