Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
4WQ5
DownloadVisualize
BU of 4wq5 by Molmil
YgjD(V85E)-YeaZ heterodimer in complex with ATP
Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, FE (III) ION, ...
Authors:Zhang, W.
Deposit date:2014-10-21
Release date:2015-01-28
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The ATP-mediated formation of the YgjD-YeaZ-YjeE complex is required for the biosynthesis of tRNA t6A in Escherichia coli.
Nucleic Acids Res., 43, 2015
5DCQ
DownloadVisualize
BU of 5dcq by Molmil
Crystal structure of bacterial adhesin, FNE from Streptococcus equi spp. equi.
Descriptor: FORMIC ACID, Fibronectin-binding protein, artificial repeat proteins (alphaREP3)
Authors:Tiouajni, M, Graille, M, van Tilbeurgh, H.
Deposit date:2015-08-24
Release date:2016-06-29
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structural and functional analysis of the fibronectin-binding protein FNE from Streptococcus equi spp. equi.
FEBS J., 281, 2014
7PSZ
DownloadVisualize
BU of 7psz by Molmil
Crystal structure of CaM in complex with CDZ (form 1)
Descriptor: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1, ...
Authors:Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
Deposit date:2021-09-24
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
7PU9
DownloadVisualize
BU of 7pu9 by Molmil
Crystal structure of CaM in complex with CDZ (form 2)
Descriptor: 1-[bis(4-chlorophenyl)methyl]-3-[(2~{R})-2-(2,4-dichlorophenyl)-2-[(2,4-dichlorophenyl)methoxy]ethyl]imidazole, CALCIUM ION, Calmodulin-1
Authors:Mechaly, A.E, Leger, C, Haouz, A, Chenal, A.
Deposit date:2021-09-28
Release date:2022-08-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.279 Å)
Cite:Dynamics and structural changes of calmodulin upon interaction with the antagonist calmidazolium.
Bmc Biol., 20, 2022
6S84
DownloadVisualize
BU of 6s84 by Molmil
TsaBDE complex from Thermotoga maritima
Descriptor: ATPase YjeE, predicted to have essential role in cell wall biosynthesis, DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, ...
Authors:Missoury, S, Li-de-La-Sierra-Gallay, I, van Tilbeurgh, H.
Deposit date:2019-07-08
Release date:2019-07-17
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.89 Å)
Cite:The structure of the TsaB/TsaD/TsaE complex reveals an unexpected mechanism for the bacterial t6A tRNA-modification.
Nucleic Acids Res., 46, 2018
6F7T
DownloadVisualize
BU of 6f7t by Molmil
Crystal Structure of an Fab fragment in complex with a peptide from Bacillus subtilis RNase Y
Descriptor: FAB RY79-90, HEAVY CHAIN, LIGHT CHAIN, ...
Authors:Golinelli-Pimpaneau, B, Hardouin, P.
Deposit date:2017-12-11
Release date:2018-10-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Dissociation of the Dimer of the Intrinsically Disordered Domain of RNase Y upon Antibody Binding.
Biophys. J., 115, 2018
6FT5
DownloadVisualize
BU of 6ft5 by Molmil
Structure of A3_A3, an artificial bi-domain protein based on two identical alphaRep A3 domains
Descriptor: GLYCEROL, SULFATE ION, alphaRep A3_A3
Authors:Li de la Sierra-Gallay, I, Leger, C, Di Meo, T.
Deposit date:2018-02-20
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
6FSQ
DownloadVisualize
BU of 6fsq by Molmil
Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD)
Descriptor: MALONATE ION, SODIUM ION, alphaRep A3_bGFPD
Authors:Li de la Sierra-Gallay, I, Leger, C.
Deposit date:2018-02-20
Release date:2018-08-08
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.79 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
3LTM
DownloadVisualize
BU of 3ltm by Molmil
Structure of a new family of artificial alpha helicoidal repeat proteins (alpha-Rep) based on thermostable HEAT-like repeats
Descriptor: Alpha-Rep4, DODECAETHYLENE GLYCOL, GLYCEROL, ...
Authors:Urvoas, A, Guellouz, A, Graille, M, van Tilbeurgh, H, Desmadril, M, Minard, P.
Deposit date:2010-02-16
Release date:2010-10-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins ( alpha Rep) based on thermostable HEAT-like repeats
J.Mol.Biol., 404, 2010
3LTJ
DownloadVisualize
BU of 3ltj by Molmil
Structure of a new family of artificial alpha helicoidal repeat proteins (alpha-Rep) based on thermostable HEAT-like repeats
Descriptor: AlphaRep-4
Authors:Urvoas, A, Guellouz, A, Graille, M, van Tilbeurgh, H, Desmadril, M, Minard, P.
Deposit date:2010-02-16
Release date:2010-10-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins ( alpha Rep) based on thermostable HEAT-like repeats
J.Mol.Biol., 404, 2010
3UQZ
DownloadVisualize
BU of 3uqz by Molmil
X-ray structure of DNA processing protein A (DprA) from Streptococcus pneumoniae
Descriptor: DNA processing protein DprA, SULFATE ION
Authors:Quevillon-Cheruel, S, Brooks, M.A, Li de la Sierra-Gallay, I.
Deposit date:2011-11-21
Release date:2012-08-29
Last modified:2012-09-26
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure-function analysis of pneumococcal DprA protein reveals that dimerization is crucial for loading RecA recombinase onto DNA during transformation.
Proc.Natl.Acad.Sci.USA, 109, 2012
4XAH
DownloadVisualize
BU of 4xah by Molmil
X-ray crystal structure of S. cerevisiae Cgi121
Descriptor: EKC/KEOPS complex subunit CGI121
Authors:Zhang, W, Graille, M, Collinet, B, van Tilbeurgh, H.
Deposit date:2014-12-14
Release date:2015-03-18
Last modified:2015-04-15
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
Nucleic Acids Res., 43, 2015
7QXM
DownloadVisualize
BU of 7qxm by Molmil
Crystal structure of the Vibrio cholerae replicative helicase (DnaB)
Descriptor: Replicative DNA helicase
Authors:Legrand, P, Quevillon-Cheruel, S, Walbott, H, Cargemel, C.
Deposit date:2022-01-26
Release date:2022-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:The apo-form of the Vibrio cholerae replicative helicase DnaB is a labile and inactive planar trimer of dimers.
Febs Lett., 596, 2022
4OGP
DownloadVisualize
BU of 4ogp by Molmil
Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P21)
Descriptor: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA topoisomerase 2-associated protein PAT1
Authors:Fourati-Kammoun, Z, Kolesnikova, O, Back, R, Keller, J, Lazar, N, Gaudon-Plesse, C, Seraphin, B, Graille, M.
Deposit date:2014-01-16
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:The C-terminal domain from S. cerevisiae Pat1 displays two conserved regions involved in decapping factor recruitment.
Plos One, 9, 2014
4WWA
DownloadVisualize
BU of 4wwa by Molmil
Crystal structure of binary complex Bud32-Cgi121
Descriptor: EKC/KEOPS complex subunit BUD32, EKC/KEOPS complex subunit CGI121, SULFATE ION
Authors:Zhang, W, van Tilbeurgh, H.
Deposit date:2014-11-10
Release date:2015-03-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.953 Å)
Cite:Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
Nucleic Acids Res., 43, 2015
4WXA
DownloadVisualize
BU of 4wxa by Molmil
Crystal structure of binary complex Gon7-Pcc1
Descriptor: ACETATE ION, EKC/KEOPS complex subunit GON7, EKC/KEOPS complex subunit PCC1, ...
Authors:Zhang, W, van Tilbeurgh, H.
Deposit date:2014-11-13
Release date:2015-03-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.44 Å)
Cite:Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
Nucleic Acids Res., 43, 2015
4WW7
DownloadVisualize
BU of 4ww7 by Molmil
Crystal structure of binary complex Bud32-Cgi121 in complex with AMP
Descriptor: ACETATE ION, ADENOSINE MONOPHOSPHATE, EKC/KEOPS complex subunit BUD32, ...
Authors:Zhang, W, van Tilbeurgh, H.
Deposit date:2014-11-10
Release date:2015-03-18
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.669 Å)
Cite:Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
Nucleic Acids Res., 43, 2015
4WX8
DownloadVisualize
BU of 4wx8 by Molmil
Crystal structure of binary complex Gon7-Pcc1
Descriptor: ACETATE ION, EKC/KEOPS complex subunit GON7, EKC/KEOPS complex subunit PCC1
Authors:Zhang, W, Van Tilbeurgh, H.
Deposit date:2014-11-13
Release date:2015-03-18
Last modified:2015-04-15
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex.
Nucleic Acids Res., 43, 2015
4ZV6
DownloadVisualize
BU of 4zv6 by Molmil
Crystal structure of the artificial alpharep-7 octarellinV.1 complex
Descriptor: AlphaRep-7, Octarellin V.1
Authors:Figueroa, M, Sleutel, M, Urvoas, A, Valerio-Lepiniec, M, Minard, P, Martial, J.A, van de Weerdt, C.
Deposit date:2015-05-18
Release date:2016-05-25
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools.
J.Struct.Biol., 195, 2016
4OJJ
DownloadVisualize
BU of 4ojj by Molmil
Structure of C-terminal domain from S. cerevisiae Pat1 decapping activator (Space group : P212121)
Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA topoisomerase 2-associated protein PAT1, ...
Authors:Fourati-Kammoun, Z, Kolesnikova, O, Back, R, Keller, J, Lazar, N, Gaudon-Plesse, C, Seraphin, B, Graille, M.
Deposit date:2014-01-21
Release date:2014-10-08
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:The C-terminal domain from S. cerevisiae Pat1 displays two conserved regions involved in decapping factor recruitment.
Plos One, 9, 2014
5MLL
DownloadVisualize
BU of 5mll by Molmil
Structure of HpDprA at 1.9 Angstroms resolution
Descriptor: 1,2-ETHANEDIOL, DNA processing chain A (DprA)
Authors:Lisboa, J, Quevillon-Cheruel, S.
Deposit date:2016-12-07
Release date:2017-12-20
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The C-terminal domain of HpDprA is a DNA-binding Winged Helix domain that does not bind double-stranded DNA.
FEBS J., 2019
6HWP
DownloadVisualize
BU of 6hwp by Molmil
Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD)
Descriptor: A3_bGFPD, MALONATE ION, SODIUM ION
Authors:Li de la Sierra-Gallay, I, Leger, C.
Deposit date:2018-10-12
Release date:2018-10-24
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.547 Å)
Cite:Ligand-induced conformational switch in an artificial bidomain protein scaffold.
Sci Rep, 9, 2019
6T66
DownloadVisualize
BU of 6t66 by Molmil
Crystal structure of the Vibrio cholerae replicative helicase (DnaB) with GDP-AlF4
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Replicative DNA helicase, ...
Authors:Legrand, P, Quevillon-Cheruel, S, Li de la Sierra-Gallay, I, Walbott, H.
Deposit date:2019-10-17
Release date:2021-04-28
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:Study of the DnaB:DciA interplay reveals insights into the primary mode of loading of the bacterial replicative helicase.
Nucleic Acids Res., 49, 2021
4WQ4
DownloadVisualize
BU of 4wq4 by Molmil
E. coli YgjD(E12A)-YeaZ heterodimer in complex with ATP
Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ...
Authors:Zhang, W, Collinet, B.
Deposit date:2014-10-21
Release date:2015-01-28
Last modified:2015-02-25
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:The ATP-mediated formation of the YgjD-YeaZ-YjeE complex is required for the biosynthesis of tRNA t6A in Escherichia coli.
Nucleic Acids Res., 43, 2015
5LXL
DownloadVisualize
BU of 5lxl by Molmil
NMR structure of the N-terminal domain of the Bacteriophage T5 decoration protein pb10
Descriptor: Decoration protein
Authors:Vernhes, E, Gilquin, B, Cuniasse, P, Boulanger, P, Zinn-Justin, S.
Deposit date:2016-09-22
Release date:2017-04-19
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid.
Sci Rep, 7, 2017

226262

数据于2024-10-16公开中

PDB statisticsPDBj update infoContact PDBjnumon