Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
6YHW
DownloadVisualize
BU of 6yhw by Molmil
Co-crystals in the P212121 space group, of a beta-cyclodextrin spacered by triazole heptyl from alpha-D-mannose, with FimH lectin at 2.00 A resolution.
Descriptor: 2H-1,2,3-TRIAZOL-4-YLMETHANOL, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), FimH, ...
Authors:de Ruyck, J, Bouckaert, J.
Deposit date:2020-03-31
Release date:2020-05-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.962 Å)
Cite:The Antiadhesive Strategy in Crohn's Disease: Orally Active Mannosides to Decolonize Pathogenic Escherichia coli from the Gut.
Chembiochem, 17, 2016
7BHD
DownloadVisualize
BU of 7bhd by Molmil
FimH in complex with alpha1,6 core-fucosylated oligomannose-3, crystallized in the trigonal space group
Descriptor: NICKEL (II) ION, SULFATE ION, Type 1 fimbrin D-mannose specific adhesin, ...
Authors:Bridot, C, Bouckaert, J, Krammer, E.-M.
Deposit date:2021-01-11
Release date:2022-07-20
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural insights into a cooperative switch between one and two FimH bacterial adhesins binding pauci- and high-mannose type N-glycan receptors.
J.Biol.Chem., 299, 2023
8BXY
DownloadVisualize
BU of 8bxy by Molmil
FimH in complex with alpha1,6 core-fucosylated oligomannose-3, crystallized in the trigonal space group
Descriptor: NICKEL (II) ION, SULFATE ION, Type 1 fimbrin D-mannose specific adhesin, ...
Authors:Bridot, C, Bouckaert, J, Krammer, E.-M.
Deposit date:2022-12-11
Release date:2023-04-12
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural insights into a cooperative switch between one and two FimH bacterial adhesins binding pauci- and high-mannose type N-glycan receptors.
J.Biol.Chem., 299, 2023
7OIH
DownloadVisualize
BU of 7oih by Molmil
Glycosylation in the crystal structure of neutrophil myeloperoxidase
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Krawczyk, L, Semwal, S, Bouckaert, J.
Deposit date:2021-05-11
Release date:2022-08-24
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.603 Å)
Cite:Native glycosylation and binding of the antidepressant paroxetine in a low-resolution crystal structure of human myeloperoxidase.
Acta Crystallogr D Struct Biol, 78, 2022
5MTS
DownloadVisualize
BU of 5mts by Molmil
Complex of FimH lectin with a TazMan (thiazolylaminomannosides) family member known as potent anti-adhesive agent at 2.6 A resolution
Descriptor: NICKEL (II) ION, Protein FimH, [2-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]amino]-1,3-thiazol-5-yl]-(4-methyl-2-pyrazin-2-yl-1,3-thiazol-5-yl)methanone
Authors:de Ruyck, J, Bouckaert, J.
Deposit date:2017-01-10
Release date:2017-03-15
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Physiochemical Tuning of Potent Escherichia coli Anti-Adhesives by Microencapsulation and Methylene Homologation.
ChemMedChem, 12, 2017
7A54
DownloadVisualize
BU of 7a54 by Molmil
Two copies of the catalytic domain of NanA sialidase from Streptococcus pneumoniae juxtaposed in the P212121 space group, in complex with DANA
Descriptor: 2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID, Sialidase A
Authors:Bridot, C, Bouckaert, J.
Deposit date:2020-08-20
Release date:2020-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Polyvalent Transition-State Analogues of Sialyl Substrates Strongly Inhibit Bacterial Sialidases*.
Chemistry, 27, 2021
1YAL
DownloadVisualize
BU of 1yal by Molmil
CARICA PAPAYA CHYMOPAPAIN AT 1.7 ANGSTROMS RESOLUTION
Descriptor: CHYMOPAPAIN
Authors:Maes, D, Bouckaert, J, Poortmans, F, Wyns, L, Looze, Y.
Deposit date:1996-06-20
Release date:1996-12-23
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of chymopapain at 1.7 A resolution.
Biochemistry, 35, 1996
1BJQ
DownloadVisualize
BU of 1bjq by Molmil
THE DOLICHOS BIFLORUS SEED LECTIN IN COMPLEX WITH ADENINE
Descriptor: ADENINE, CALCIUM ION, LECTIN, ...
Authors:Hamelryck, T.W, Loris, R, Bouckaert, J, Dao-Thi, M.H, Wyns, L, Etzler, M.
Deposit date:1998-06-26
Release date:1998-12-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers from Dolichos biflorus.
J.Mol.Biol., 286, 1999
7OO2
DownloadVisualize
BU of 7oo2 by Molmil
Crystal structure of an antibody targeting the capsular polysaccharide of serogroup X Neisseria meningitidis (MenX)
Descriptor: THIOCYANATE ION, anti-MenX Fab heavy chain, anti-MenX Fab light chain
Authors:Pietri, G.P, de Ruyck, J, Lenac, T, Adamo, R, Bouckaert, J.
Deposit date:2021-05-26
Release date:2021-10-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Elucidating the Structural and Minimal Protective Epitope of the Serogroup X Meningococcal Capsular Polysaccharide.
Front Mol Biosci, 8, 2021
2VCO
DownloadVisualize
BU of 2vco by Molmil
Crystal structure of the fimbrial adhesin FimH in complex with its high-mannose epitope
Descriptor: NICKEL (II) ION, PROTEIN FIMH, SULFATE ION, ...
Authors:Wellens, A, Garofalo, C, Nguyen, H, Wyns, L, De Greve, H, Hultgren, S.J, Bouckaert, J.
Deposit date:2007-09-26
Release date:2008-05-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Intervening with Urinary Tract Infections Using Anti-Adhesives Based on the Crystal Structure of the Fimh-Oligomannose-3 Complex.
Plos One, 3, 2008
1Q8O
DownloadVisualize
BU of 1q8o by Molmil
Pterocartpus angolensis lectin PAL in complex with the dimmanoside Man(alpha1-2)Man
Descriptor: CALCIUM ION, MANGANESE (II) ION, alpha-D-mannopyranose-(1-2)-methyl alpha-D-mannopyranoside, ...
Authors:Loris, R, Van Walle, I, De Greve, H, Beeckmans, S, Deboeck, F, Wyns, L, Bouckaert, J.
Deposit date:2003-08-22
Release date:2004-02-10
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural Basis of Oligomannose Recognition by the Pterocarpus angolensis Seed Lectin
J.Mol.Biol., 335, 2004
1Q8S
DownloadVisualize
BU of 1q8s by Molmil
Pterocarpus angolensis lectin (PAL) in complex with the dimannoside Man(alpha1-6)Man
Descriptor: CALCIUM ION, MANGANESE (II) ION, alpha-D-mannopyranose-(1-6)-methyl alpha-D-mannopyranoside, ...
Authors:Loris, R, Van Walle, I, De Greve, H, Beeckmans, S, DeBoeck, F, Wyns, L, Bouckaert, J.
Deposit date:2003-08-22
Release date:2004-02-10
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structural Basis of Oligomannose Recognition by the Pterocarpus angolensis Seed Lectin
J.Mol.Biol., 335, 2004
7BBV
DownloadVisualize
BU of 7bbv by Molmil
Pectate lyase B from Verticillium dahliae
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, Pectate lyase B, ...
Authors:Safran, J, Habrylo, O, Bouckaert, J, Pau Roblot, C, Senechal, F, Pelloux, J.
Deposit date:2020-12-18
Release date:2022-07-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:The specificity of pectate lyase VdPelB from Verticilium dahliae is highlighted by structural, dynamical and biochemical characterizations.
Int.J.Biol.Macromol., 231, 2023
7B7A
DownloadVisualize
BU of 7b7a by Molmil
ENDO-POLYGALACTURONASE FROM ARABIDOPSIS THALIANA
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Pectin lyase-like superfamily protein, alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Safran, J, Tabi, W, Habrylo, O, Bouckaert, J, Lefebvre, V, Senechal, F, Pelloux, J.
Deposit date:2020-12-10
Release date:2022-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Plant polygalacturonase structures specify enzyme dynamics and processivities to fine-tune cell wall pectins.
Plant Cell, 2023
7B8B
DownloadVisualize
BU of 7b8b by Molmil
ADPG2 - ENDOPOLYGALACTURONASE FROM ARABIDOPSIS THALIANA
Descriptor: PHOSPHATE ION, Polygalacturonase ADPG2
Authors:Safran, J, Tabi, W, Habrylo, O, Bouckaert, J, Lefebvre, V, Senechal, F, Pelloux, J.
Deposit date:2020-12-12
Release date:2022-06-22
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Plant polygalacturonase structures specify enzyme dynamics and processivities to fine-tune cell wall pectins.
Plant Cell, 2023
4BWO
DownloadVisualize
BU of 4bwo by Molmil
The FedF adhesin from entrrotoxigenic Escherichia coli is a sulfate- binding lectin
Descriptor: BROMIDE ION, F18 FIMBRIAL ADHESIN AC, SULFATE ION
Authors:Lonardi, E, Moonens, K, Buts, L, de Boer, A.R, Olsson, J.D.M, Weiss, M.S, Fabre, E, Guerardel, Y, Deelder, A.M, Oscarson, S, Wuhrer, M, Bouckaert, J.
Deposit date:2013-07-03
Release date:2013-08-28
Last modified:2014-05-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia Coli
Biology, 2, 2013
1BU4
DownloadVisualize
BU of 1bu4 by Molmil
RIBONUCLEASE 1 COMPLEX WITH 2'GMP
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, RIBONUCLEASE T1
Authors:Loris, R, Devos, S, Langhorst, U, Decanniere, K, Bouckaert, J, Maes, D, Transue, T.R, Steyaert, J.
Deposit date:1998-09-11
Release date:1999-02-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conserved water molecules in a large family of microbial ribonucleases.
Proteins, 36, 1999
2J6G
DownloadVisualize
BU of 2j6g by Molmil
FaeG from F4ac ETEC strain 5_95, produced in tobacco plant chloroplast
Descriptor: ACETATE ION, FAEG
Authors:Van Molle, I, Joensuu, J.J, Buts, L, Panjikar, S, Kotiaho, M, Bouckaert, J, Wyns, L, Niklander-Teeri, V, De Greve, H.
Deposit date:2006-09-28
Release date:2007-04-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Chloroplasts Assemble the Major Subunit Faeg of Escherichia Coli F4 (K88) Fimbriae Into Strand-Swapped Dimers
J.Mol.Biol., 368, 2007
2J6R
DownloadVisualize
BU of 2j6r by Molmil
FaeG from F4ac ETEC strain GIS26, produced in tobacco plant chloroplast
Descriptor: K88 FIMBRIAL PROTEIN, PHOSPHATE ION
Authors:Van Molle, I, Joensuu, J.J, Buts, L, Panjikar, S, Kotiaho, M, Bouckaert, J, Wyns, L, Niklander-Teeri, V, De Greve, H.
Deposit date:2006-10-03
Release date:2007-04-10
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Chloroplasts Assemble the Major Subunit Faeg of Escherichia Coli F4 (K88) Fimbriae Into Strand-Swapped Dimers
J.Mol.Biol., 368, 2007
4K0O
DownloadVisualize
BU of 4k0o by Molmil
F17b-G lectin domain with bound GlcNAc(beta1-3)Gal
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-methyl beta-D-galactopyranoside, F17b-G fimbrial adhesin, NICKEL (II) ION, ...
Authors:Buts, L, Loris, R, Bouckaert, J, Moonens, K.
Deposit date:2013-04-04
Release date:2013-04-17
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural Sampling of Glycan Interaction Profiles Reveals Mucosal Receptors for Fimbrial Adhesins of Enterotoxigenic Escherichia coli
Biology (Basel), 2, 2013
7A5X
DownloadVisualize
BU of 7a5x by Molmil
Two copies of the catalytic domain of NanA sialidase from Streptococcus pneumoniae juxtaposed in the P212121 space group, in complex with DANA derivatized with a PEG linker on the glycerol group.
Descriptor: (4~{S},5~{R},6~{R})-5-acetamido-6-[(1~{R},2~{S})-3-[[1-(2-ethoxyethyl)-1,2,3-triazol-4-yl]methylsulfanyl]-1,2-bis(oxidanyl)propyl]-4-oxidanyl-oxane-2-carboxylic acid, CALCIUM ION, CHLORIDE ION, ...
Authors:Bridot, C, Bouckaert, J.
Deposit date:2020-08-24
Release date:2020-11-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Polyvalent Transition-State Analogues of Sialyl Substrates Strongly Inhibit Bacterial Sialidases*.
Chemistry, 27, 2021
5ABZ
DownloadVisualize
BU of 5abz by Molmil
Complex of the FimH lectin with a C-linked naphtyl alpha-D-mannoside in soaked trigonal crystals at 2.40 A resolution
Descriptor: (2R,3S,4R,5S,6R)-2-(HYDROXYMETHYL)-6-[3-(NAPHTHALEN-1-YL)PROPYL]OXANE-3,4,5-TRIOL, FIMH, NICKEL (II) ION
Authors:de Ruyck, J, Bouckaert, J.
Deposit date:2015-08-10
Release date:2016-03-09
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of C-Mannosylated Anti-Adhesives Bound to the Type 1 Fimbrial Fimh Adhesin
Iucrj, 3, 2016
5AAP
DownloadVisualize
BU of 5aap by Molmil
Complex of the FimH lectin with a C-linked para-biphenyl methylene alpha-D-mannoside
Descriptor: 1,2-ETHANEDIOL, FIMH, GLYCEROL, ...
Authors:De Ruyck, J, Bouckaert, J.
Deposit date:2015-07-27
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.302 Å)
Cite:Structures of C-Mannosylated Anti-Adhesives Bound to the Type 1 Fimbrial Fimh Adhesin
Iucrj, 3, 2016
5AAL
DownloadVisualize
BU of 5aal by Molmil
Complex of the FimH lectin with a C-linked para-biphenyl ethylene alpha-D-mannoside in soaked trigonal crystals at 2.45 A resolution
Descriptor: (2R,3S,4R,5S,6R)-2-(hydroxymethyl)-6-[(Z)-3-(4-phenylphenyl)prop-2-enyl]oxane-3,4,5-triol, FIMH, NICKEL (II) ION, ...
Authors:De Ruyck, J, Bouckaert, J.
Deposit date:2015-07-27
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.45 Å)
Cite:Structures of C-Mannosylated Anti-Adhesives Bound to the Type 1 Fimbrial Fimh Adhesin
Iucrj, 3, 2016
5BU4
DownloadVisualize
BU of 5bu4 by Molmil
RIBONUCLEASE T1 COMPLEX WITH 2'GMP
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PROTEIN (RIBONUCLEASE T1)
Authors:Loris, R, Devos, S, Langhorst, U, Decanniere, K, Bouckaert, J, Maes, D, Transue, T.R, Steyaert, J.
Deposit date:1998-09-15
Release date:1998-09-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Conserved water molecules in a large family of microbial ribonucleases.
Proteins, 36, 1999

226707

数据于2024-10-30公开中

PDB statisticsPDBj update infoContact PDBjnumon