Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
5H3K
DownloadVisualize
BU of 5h3k by Molmil
Crystal structure of a hypothetical protein from Synechocystis
Descriptor: Slr0280 protein
Authors:Dong, L.-L, Wu, D.
Deposit date:2016-10-25
Release date:2017-10-25
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:Crystal structure of a hypothetical protein from Synechocystis
To Be Published
5HEA
DownloadVisualize
BU of 5hea by Molmil
CgT structure in hexamer
Descriptor: Putative glycosyltransferase (GalT1)
Authors:Zhang, H, Wu, H.
Deposit date:2016-01-05
Release date:2016-08-31
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.003 Å)
Cite:A new helical binding domain mediates a glycosyltransferase activity of a bifunctional protein
To Be Published
8DL9
DownloadVisualize
BU of 8dl9 by Molmil
Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z199538122
Descriptor: 1-{4-[(naphthalen-1-yl)methyl]piperazin-1-yl}ethan-1-one, 3C-like proteinase
Authors:Kovalevsky, A.Y, Coates, L, Kneller, D.W.
Deposit date:2022-07-07
Release date:2023-05-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:AI-Accelerated Design of Targeted Covalent Inhibitors for SARS-CoV-2.
J.Chem.Inf.Model., 63, 2023
8DLB
DownloadVisualize
BU of 8dlb by Molmil
Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound Z2799209083
Descriptor: 1-[(5S)-5-(3,4-dimethoxyphenyl)-3-phenyl-4,5-dihydro-1H-pyrazol-1-yl]ethan-1-one, 3C-like proteinase
Authors:Kovalevsky, A.Y, Coates, L, Kneller, D.W.
Deposit date:2022-07-07
Release date:2023-05-17
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:AI-Accelerated Design of Targeted Covalent Inhibitors for SARS-CoV-2.
J.Chem.Inf.Model., 63, 2023
8DMD
DownloadVisualize
BU of 8dmd by Molmil
Room temperature X-ray structure of SARS-CoV-2 main protease in complex with compound ZZ4461624291
Descriptor: 1-[(3R)-4-[(3-chlorophenyl)methyl]-3-(2-methylpropyl)piperazin-1-yl]ethan-1-one, 3C-like proteinase
Authors:Kovalevsky, A, Coates, L, Kneller, D.W.
Deposit date:2022-07-08
Release date:2023-05-17
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:AI-Accelerated Design of Targeted Covalent Inhibitors for SARS-CoV-2.
J.Chem.Inf.Model., 63, 2023
5HEC
DownloadVisualize
BU of 5hec by Molmil
CgT structure in dimer
Descriptor: Putative glycosyltransferase (GalT1)
Authors:Zhang, H, Wu, H.
Deposit date:2016-01-05
Release date:2016-08-31
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.395 Å)
Cite:New Helical Binding Domain Mediates a Glycosyltransferase Activity of a Bifunctional Protein.
J.Biol.Chem., 291, 2016
4Z5V
DownloadVisualize
BU of 4z5v by Molmil
Crystal Structure of MHV ns2 PDE Domain
Descriptor: Non-structural protein 2a
Authors:Sui, B.K, Huang, J.H, Peng, G.Q, Zhao, L.
Deposit date:2015-04-03
Release date:2016-02-10
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (3.049 Å)
Cite:Crystal structure of the mouse hepatitis virus ns2 phosphodiesterase domain that antagonizes RNase L activation
J.Gen.Virol., 97, 2016
5C94
DownloadVisualize
BU of 5c94 by Molmil
Infectious bronchitis virus nsp9
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, Non-structural protein 9
Authors:Chen, C, Dou, Y, Yang, H, Su, D.
Deposit date:2015-06-26
Release date:2016-06-29
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.438 Å)
Cite:Structural basis for dimerization and RNA binding of avian infectious bronchitis virus nsp9.
Protein Sci., 26, 2017
7LA6
DownloadVisualize
BU of 7la6 by Molmil
THE STRUCTURE OF A SENSOR DOMAIN OF A HISTIDINE KINASE (VxrA) FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961, N239 deletion mutant
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, SULFATE ION, ...
Authors:Tan, K, Wu, R, Jedrzejczak, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2021-01-05
Release date:2021-01-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Sensor Domain of Histidine Kinase VxrA of Vibrio cholerae - A Hairpin-swapped Dimer and its Conformational Change.
J.Bacteriol., 203, 2021
4PHR
DownloadVisualize
BU of 4phr by Molmil
Domain of unknown function 1792 (DUF1792) with manganese
Descriptor: ACETATE ION, MANGANESE (II) ION, Putative glycosyltransferase (GalT1), ...
Authors:Zhang, H, Wu, H.
Deposit date:2014-05-06
Release date:2014-08-06
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold.
Nat Commun, 5, 2014
8XKO
DownloadVisualize
BU of 8xko by Molmil
CryoEM structure of compound HNC-1664 bound with RdRP-RNA complex of SARS-CoV-2
Descriptor: MAGNESIUM ION, Non-structural protein 7, Non-structural protein 8, ...
Authors:Li, M, An, L, Hong, Y, Li, S, Zhang, K.
Deposit date:2023-12-23
Release date:2024-12-04
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.29 Å)
Cite:An adenosine analog shows high antiviral potency against coronavirus and arenavirus mainly through an unusual base pairing mode.
Nat Commun, 15, 2024
8XPO
DownloadVisualize
BU of 8xpo by Molmil
Cryo-EM structure of Lassa virus RdRP elongation complex with the NTP form of compound HNC-1664 bound in the active site
Descriptor: RNA (14-MER), RNA (32-MER), RNA (9-MER), ...
Authors:Jing, X, Gong, P.
Deposit date:2024-01-04
Release date:2024-12-04
Last modified:2025-01-15
Method:ELECTRON MICROSCOPY (3.02 Å)
Cite:An adenosine analog shows high antiviral potency against coronavirus and arenavirus mainly through an unusual base pairing mode.
Nat Commun, 15, 2024
8H1R
DownloadVisualize
BU of 8h1r by Molmil
Crystal structure of LptDE-YifL complex
Descriptor: (2R)-3-{[(2S)-3-HYDROXY-2-(PALMITOYLAMINO)PROPYL]THIO}PROPANE-1,2-DIYL DIHEXADECANOATE, LPS-assembly lipoprotein LptE, LPS-assembly protein LptD, ...
Authors:Luo, Q, Huang, Y.
Deposit date:2022-10-03
Release date:2023-10-25
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Surface lipoprotein sorting by crosstalk between Lpt and Lol pathways in gram-negative bacteria
Nat Commun, 16, 2025
8H1S
DownloadVisualize
BU of 8h1s by Molmil
Crystal structure of apo-LptDE complex
Descriptor: LPS-assembly lipoprotein LptE, LPS-assembly protein LptD
Authors:Luo, Q, Huang, Y.
Deposit date:2022-10-03
Release date:2023-10-11
Last modified:2025-05-21
Method:X-RAY DIFFRACTION (3.28 Å)
Cite:Surface lipoprotein sorting by crosstalk between Lpt and Lol pathways in gram-negative bacteria
Nat Commun, 16, 2025
7KB9
DownloadVisualize
BU of 7kb9 by Molmil
THE STRUCTURE OF A SENSOR DOMAIN OF A HISTIDINE KINASE (VxrA) FROM VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961, D238-T240 deletion mutant
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Sensor histidine kinase
Authors:Tan, K, Wu, R, Jedrzejczak, R, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2020-10-01
Release date:2020-10-14
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Sensor Domain of Histidine Kinase VxrA of Vibrio cholerae - A Hairpin-swapped Dimer and its Conformational Change.
J.Bacteriol., 2021
8XPP
DownloadVisualize
BU of 8xpp by Molmil
Crystal structure of the enterovirus 71 RdRP elongation complex with the nucleoside monophosphate form of compound HNC-1664 at product position -1 (post-translocation state)
Descriptor: Genome polyprotein, RNA (17-MER), RNA (35-MER), ...
Authors:Zhong, Y, Gong, P.
Deposit date:2024-01-04
Release date:2024-12-04
Last modified:2025-01-15
Method:X-RAY DIFFRACTION (3 Å)
Cite:An adenosine analog shows high antiviral potency against coronavirus and arenavirus mainly through an unusual base pairing mode.
Nat Commun, 15, 2024
4PFX
DownloadVisualize
BU of 4pfx by Molmil
The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold
Descriptor: ACETATE ION, Putative glycosyltransferase (GalT1), URIDINE-5'-DIPHOSPHATE
Authors:Zhang, H, Wu, H.
Deposit date:2014-04-30
Release date:2014-07-23
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold.
Nat Commun, 5, 2014
4PHS
DownloadVisualize
BU of 4phs by Molmil
Selenomethionine substituted structure of domain of unknown function 1792 (DUF1792)
Descriptor: Putative glycosyltransferase (GalT1), URIDINE-5'-DIPHOSPHATE
Authors:Zhang, H, Wu, H.
Deposit date:2014-05-06
Release date:2014-08-06
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:The highly conserved domain of unknown function 1792 has a distinct glycosyltransferase fold.
Nat Commun, 5, 2014
2G17
DownloadVisualize
BU of 2g17 by Molmil
The structure of N-acetyl-gamma-glutamyl-phosphate reductase from Salmonella typhimurium.
Descriptor: N-acetyl-gamma-glutamyl-phosphate reductase, SULFATE ION
Authors:Cuff, M.E, Zhou, M, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-02-13
Release date:2006-03-21
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The structure of N-acetyl-gamma-glutamyl-phosphate reductase from Salmonella typhimurium.
To be Published
5X0S
DownloadVisualize
BU of 5x0s by Molmil
Solution NMR structure of peptide toxin SsTx from Scolopendra subspinipes mutilans
Descriptor: SsTx
Authors:Wu, F, Luo, L, Qu, D, Zhang, L, Tian, C, Lai, R.
Deposit date:2017-01-23
Release date:2018-01-24
Last modified:2024-10-23
Method:SOLUTION NMR
Cite:Centipedes subdue giant prey by blocking KCNQ channels
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7WP6
DownloadVisualize
BU of 7wp6 by Molmil
Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK in complex with three neutralizing antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 36H6 heavy chain, ...
Authors:Zheng, Q, Sun, H, Yuan, Q, Li, S, Xia, N.
Deposit date:2022-01-23
Release date:2023-03-01
Last modified:2025-06-18
Method:ELECTRON MICROSCOPY (3.81 Å)
Cite:Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine.
Cell Host Microbe, 30, 2022
7WP8
DownloadVisualize
BU of 7wp8 by Molmil
Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK1628x in complex with three neutralizing antibodies
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2B4 heavy chain, ...
Authors:Zheng, Q, Sun, H, Yuan, Q, Li, S, Xia, N.
Deposit date:2022-01-23
Release date:2023-03-08
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.88 Å)
Cite:Lineage-mosaic and mutation-patched spike proteins for broad-spectrum COVID-19 vaccine.
Cell Host Microbe, 30, 2022
7FEO
DownloadVisualize
BU of 7feo by Molmil
Crystal structure of AtMBD5 MBD domain
Descriptor: Methyl-CpG-binding domain-containing protein 5, SULFATE ION
Authors:Zhou, M.Q, Wu, Z.B, Liu, K, Min, J.R, Structural Genomics Consortium (SGC)
Deposit date:2021-07-21
Release date:2021-12-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Family-wide Characterization of Methylated DNA Binding Ability of Arabidopsis MBDs.
J.Mol.Biol., 434, 2022
7X7V
DownloadVisualize
BU of 7x7v by Molmil
Cryo-EM structure of SARS-CoV spike protein in complex with three nAbs X01, X10 and X17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, X01 heavy chain, ...
Authors:Sun, H, Liu, L, Zhang, T, Zheng, Q, Li, S, Xia, N.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (3.83 Å)
Cite:The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 119, 2022
7X7T
DownloadVisualize
BU of 7x7t by Molmil
Cryo-EM structure of SARS-CoV-2 spike protein in complex with three nAbs X01, X10 and X17
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Spike protein S1, X01 heavy chain, ...
Authors:Sun, H, Liu, L, Zheng, Q, Li, S, Zhang, T, Xia, N.
Deposit date:2022-03-10
Release date:2022-08-17
Last modified:2025-07-02
Method:ELECTRON MICROSCOPY (3.48 Å)
Cite:The neutralizing breadth of antibodies targeting diverse conserved epitopes between SARS-CoV and SARS-CoV-2.
Proc.Natl.Acad.Sci.USA, 119, 2022

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon