8K4E
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7VEP
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7FGQ
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6KSD
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6KRH
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![BU of 6krh by Molmil](/molmil-images/mine/6krh) | Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis | Descriptor: | ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... | Authors: | Ramachandran, R, Shukla, A, Afsar, M. | Deposit date: | 2019-08-21 | Release date: | 2020-08-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
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6KSC
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6LW8
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![BU of 6lw8 by Molmil](/molmil-images/mine/6lw8) | Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis | Descriptor: | (4R)-4-(4-fluorophenyl)-4,5,6,7-tetrahydro-1H-imidazo[4,5-c]pyridine, DNA ligase A, GLYCEROL, ... | Authors: | Ramachandran, R, Afsar, M, Shukla, A. | Deposit date: | 2020-02-07 | Release date: | 2021-02-10 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.401 Å) | Cite: | Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A. J.Struct.Biol., 213, 2021
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6KDU
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![BU of 6kdu by Molmil](/molmil-images/mine/6kdu) | Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis | Descriptor: | ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... | Authors: | Ramachandran, R, Shukla, A, Afsar, M. | Deposit date: | 2019-07-02 | Release date: | 2020-07-01 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Salt bridges at the subdomain interfaces of the adenylation domain and active-site residues of Mycobacterium tuberculosis NAD + -dependent DNA ligase A (MtbLigA) are important for the initial steps of nick-sealing activity. Acta Crystallogr D Struct Biol, 77, 2021
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6KJM
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![BU of 6kjm by Molmil](/molmil-images/mine/6kjm) | Structural basis for domain rotation during adenylation of active site K123 and fragment library screening against NAD+ -dependent DNA ligase from Mycobacterium tuberculosis | Descriptor: | ADENOSINE MONOPHOSPHATE, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, DNA ligase A, ... | Authors: | Ramachandran, R, Shukla, A, Afsar, M. | Deposit date: | 2019-07-22 | Release date: | 2020-07-22 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure based identification of first-in-class fragment inhibitors that target the NMN pocket of M. tuberculosis NAD + -dependent DNA ligase A. J.Struct.Biol., 213, 2021
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6KKV
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1M4Y
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![BU of 1m4y by Molmil](/molmil-images/mine/1m4y) | Crystal structure of HslV from Thermotoga maritima | Descriptor: | ATP-dependent protease hslV, SODIUM ION | Authors: | Song, H.K, Ramachandran, R, Bochtler, M.B, Hartmann, C, Azim, M.K, Huber, R. | Deposit date: | 2002-07-05 | Release date: | 2003-05-06 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Isolation and characterization of the prokaryotic proteasome homolog HslVU (ClpQY) from Thermotoga maritima and the crystal structure of HslV. BIOPHYS.CHEM., 100, 2003
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8K3O
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5T41
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4PCQ
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![BU of 4pcq by Molmil](/molmil-images/mine/4pcq) | Crystal Structure of MtbAldR (Rv2779c) | Descriptor: | Possible transcriptional regulatory protein (Probably Lrp/AsnC-family) | Authors: | Dey, A, Ramachandran, R. | Deposit date: | 2014-04-16 | Release date: | 2015-05-06 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (2.95 Å) | Cite: | Crystal structure of MtbAldR To be published
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1Z30
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![BU of 1z30 by Molmil](/molmil-images/mine/1z30) | NMR structure of the apical part of stemloop D from cloverleaf 1 of bovine enterovirus 1 RNA | Descriptor: | 5'-R(*GP*GP*CP*GP*UP*UP*CP*GP*UP*UP*AP*GP*AP*AP*CP*GP*UP*C)-3' | Authors: | Ihle, Y, Ohlenschlager, O, Duchardt, E, Ramachandran, R, Gorlach, M. | Deposit date: | 2005-03-10 | Release date: | 2005-04-26 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA Nucleic Acids Res., 33, 2005
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5IS2
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5IT4
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5IT0
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5JMA
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![BU of 5jma by Molmil](/molmil-images/mine/5jma) | Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain | Descriptor: | 1,2-ETHANEDIOL, MAGNESIUM ION, Phosphoserine phosphatase, ... | Authors: | Shree, S, Dubey, S, Agrawal, A, Ramachandran, R. | Deposit date: | 2016-04-28 | Release date: | 2017-05-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.03 Å) | Cite: | Crystal structure of Mycobacterium avium SerB2 in complex with serine at catalytic (PSP) domain To be published
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5JLP
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5JJB
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5JLR
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![BU of 5jlr by Molmil](/molmil-images/mine/5jlr) | Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain | Descriptor: | 1,2-ETHANEDIOL, 2-(2-METHOXYETHOXY)ETHANOL, MAGNESIUM ION, ... | Authors: | Shree, S, Agrawal, A, Dubey, S, Ramachandran, R. | Deposit date: | 2016-04-27 | Release date: | 2017-05-03 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.261 Å) | Cite: | Crystal structure of Mycobacterium avium SerB2 with serine present at slightly different position near ACT domain To be published
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2XI1
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![BU of 2xi1 by Molmil](/molmil-images/mine/2xi1) | Crystal structure of the HIV-1 Nef sequenced from a patient's sample | Descriptor: | NEF | Authors: | Yadav, G.P, Singh, P, Gupta, S, Tripathi, A.K, Tripathi, R.K, Ramachandran, R. | Deposit date: | 2010-06-25 | Release date: | 2011-08-10 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | A Novel Dimer-Tetramer Transition Captured by the Crystal Structure of the HIV-1 Nef. Plos One, 6, 2011
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1RFR
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![BU of 1rfr by Molmil](/molmil-images/mine/1rfr) | NMR structure of the 30mer stemloop-D of coxsackieviral RNA | Descriptor: | stemloop-D RNA of the 5'-cloverleaf of coxsackievirus B3 | Authors: | Ohlenschlager, O, Wohnert, J, Bucci, E, Seitz, S, Hafner, S, Ramachandran, R, Zell, R, Gorlach, M. | Deposit date: | 2003-11-10 | Release date: | 2004-03-23 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | The structure of the stemloop D subdomain of coxsackievirus B3 cloverleaf
RNA and its interaction with the proteinase 3C. STRUCTURE, 12, 2004
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3S5C
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![BU of 3s5c by Molmil](/molmil-images/mine/3s5c) | Crystal Structure of a Hexachlorocyclohexane dehydrochlorinase (LinA) Type2 | Descriptor: | LinA | Authors: | Kukshal, V, Macwan, A.S, Kumar, A, Ramachandran, R. | Deposit date: | 2011-05-23 | Release date: | 2012-05-23 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3.5 Å) | Cite: | Crystal structure of the hexachlorocyclohexane dehydrochlorinase (LinA-type2): mutational analysis, thermostability and enantioselectivity Plos One, 7, 2012
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