1SKT
| SOLUTION STRUCTURE OF APO N-DOMAIN OF TROPONIN C, NMR, 40 STRUCTURES | Descriptor: | TROPONIN-C | Authors: | Tsuda, S, Miura, A, Gagne, S.M, Spyracopoulos, L, Sykes, B.D. | Deposit date: | 1998-04-06 | Release date: | 1998-12-09 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C. Biochemistry, 38, 1999
|
|
1ZAC
| N-DOMAIN OF TROPONIN C FROM CHICKEN SKELETAL MUSCLE, NMR, MINIMIZED AVERAGE STRUCTURE | Descriptor: | TROPONIN-C | Authors: | Tsuda, S, Miura, A, Gagne, S.M, Spyracopoulos, L, Sykes, B.D. | Deposit date: | 1998-04-07 | Release date: | 1998-11-11 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Low-temperature-induced structural changes in the Apo regulatory domain of skeletal muscle troponin C. Biochemistry, 38, 1999
|
|
2PIS
| Efforts toward Expansion of the Genetic Alphabet: Structure and Replication of Unnatural Base Pairs | Descriptor: | DNA (5'-D(*CP*GP*(CBR)P*GP*AP*AP*(FFD)P*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION | Authors: | Matsuda, S, Fillo, J.D, Henry, A.A, Wilkins, S.J, Rai, P, Dwyer, T.J, Geierstanger, B.H, Wemmer, D.E, Schultz, P.G, Spraggon, G, Romesberg, F.E. | Deposit date: | 2007-04-13 | Release date: | 2007-10-30 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Efforts toward expansion of the genetic alphabet: structure and replication of unnatural base pairs. J.Am.Chem.Soc., 129, 2007
|
|
1C8A
| |
1SQJ
| Crystal Structure Analysis of Oligoxyloglucan reducing-end-specific cellobiohydrolase (OXG-RCBH) | Descriptor: | oligoxyloglucan reducing-end-specific cellobiohydrolase | Authors: | Yaoi, K, Kondo, H, Noro, N, Suzuki, M, Tsuda, S, Mitsuishi, Y. | Deposit date: | 2004-03-19 | Release date: | 2004-07-20 | Last modified: | 2024-10-16 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Tandem Repeat of a Seven-Bladed beta-Propeller Domain in Oligoxyloglucan Reducing-End-Specific Cellobiohydrolase Structure, 12, 2004
|
|
1C89
| |
1DQC
| SOLUTION STRUCTURE OF TACHYCITIN, AN ANTIMICROBIAL PROTEIN WITH CHITIN-BINDING FUNCTION | Descriptor: | TACHYCITIN | Authors: | Suetake, T, Tsuda, S, Kawabata, S, Miura, K, Kawano, K. | Deposit date: | 2000-01-04 | Release date: | 2000-09-13 | Last modified: | 2022-02-16 | Method: | SOLUTION NMR | Cite: | Chitin-binding proteins in invertebrates and plants comprise a common chitin-binding structural motif. J.Biol.Chem., 275, 2000
|
|
6JK5
| Ca2+-dependent type II antifreeze protein (Ca2+-free form) | Descriptor: | SULFATE ION, Type II antifreeze protein | Authors: | Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y. | Deposit date: | 2019-02-27 | Release date: | 2019-06-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface. Biomolecules, 9, 2019
|
|
6JK4
| Ca2+-dependent type II antifreeze protein | Descriptor: | CALCIUM ION, Type II antifreeze protein | Authors: | Arai, T, Tsuda, S, Kondo, H, Nishimiya, Y. | Deposit date: | 2019-02-27 | Release date: | 2019-06-26 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.06 Å) | Cite: | Calcium-Binding Generates the Semi-Clathrate Waters on a Type II Antifreeze Protein to Adsorb onto an Ice Crystal Surface. Biomolecules, 9, 2019
|
|
2LX3
| 1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout | Descriptor: | Type III antifreeze protein nfeAFP11 | Authors: | Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S. | Deposit date: | 2012-08-12 | Release date: | 2013-07-24 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner J.Biomol.Nmr, 55, 2013
|
|
2LX2
| 1H,13C,15N assignments for an isoform of the type III antifreeze protein from notched-fin eelpout | Descriptor: | Type III antifreeze protein nfeAFP11 | Authors: | Kumeta, H, Ogura, K, Nishimiya, Y, Miura, A, Inagaki, F, Tsuda, S. | Deposit date: | 2012-08-12 | Release date: | 2013-07-24 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | NMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner J.Biomol.Nmr, 55, 2013
|
|
7JJV
| |
1ISP
| Crystal structure of Bacillus subtilis lipase at 1.3A resolution | Descriptor: | GLYCEROL, lipase | Authors: | Kawasaki, K, Kondo, H, Suzuki, M, Ohgiya, S, Tsuda, S. | Deposit date: | 2001-12-19 | Release date: | 2002-12-19 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Alternate conformations observed in catalytic serine of Bacillus subtilis lipase determined at 1.3 A resolution. Acta Crystallogr.,Sect.D, 58, 2002
|
|
1I56
| |
1IY3
| Solution Structure of the Human lysozyme at 4 degree C | Descriptor: | Lysozyme | Authors: | Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S. | Deposit date: | 2002-07-15 | Release date: | 2002-07-31 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy Biochemistry, 42, 2003
|
|
1IY4
| Solution structure of the human lysozyme at 35 degree C | Descriptor: | Lysozyme | Authors: | Kumeta, H, Miura, A, Kobashigawa, Y, Miura, K, Oka, C, Nitta, K, Nemoto, N, Tsuda, S. | Deposit date: | 2002-07-15 | Release date: | 2002-07-31 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | Low-temperature-induced structural changes in human lysozyme elucidated by three-dimensional NMR spectroscopy Biochemistry, 42, 2003
|
|
3VN3
| Fungal antifreeze protein exerts hyperactivity by constructing an inequable beta-helix | Descriptor: | 1,2-ETHANEDIOL, Antifreeze protein | Authors: | Kondo, H, Xiao, N, Hanada, Y, Sugimoto, H, Hoshino, T, Garnham, C.P, Davies, P.L, Tsuda, S. | Deposit date: | 2011-12-21 | Release date: | 2012-06-06 | Last modified: | 2013-07-17 | Method: | X-RAY DIFFRACTION (0.95 Å) | Cite: | Ice-binding site of snow mold fungus antifreeze protein deviates from structural regularity and high conservation Proc.Natl.Acad.Sci.USA, 109, 2012
|
|
5B5H
| Hydrophobic ice-binding site confer hyperactivity on antifreeze protein from a snow mold fungus | Descriptor: | Antifreeze protein, SODIUM ION, SULFATE ION | Authors: | Cheng, J, Hanada, Y, Miura, A, Tsuda, S, Kondo, H. | Deposit date: | 2016-05-06 | Release date: | 2016-09-28 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Hydrophobic ice-binding sites confer hyperactivity of an antifreeze protein from a snow mold fungus. Biochem.J., 473, 2016
|
|
3WP9
| Crystal structure of antifreeze protein from an Antarctic sea ice bacterium Colwellia sp. | Descriptor: | Ice-binding protein | Authors: | Hanada, Y, Nishimiya, Y, Miura, A, Tsuda, S, Kondo, H. | Deposit date: | 2014-01-10 | Release date: | 2014-07-02 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Hyperactive antifreeze protein from an Antarctic sea ice bacterium Colwellia sp. has a compound ice-binding site without repetitive sequences. Febs J., 281, 2014
|
|
5XQN
| Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), C2221 form. | Descriptor: | Ice-structuring protein, SULFATE ION | Authors: | Adachi, M, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.19 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5XQR
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20V mutant (NFE6, AFP), C2221 form | Descriptor: | ACETATE ION, Ice-structuring protein | Authors: | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.3 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5XQV
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20L mutant (NFE6, AFP), P21 form | Descriptor: | Ice-structuring protein | Authors: | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.97 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5XR0
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20T mutant (NFE6, AFP), P21 form | Descriptor: | Ice-structuring protein | Authors: | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (0.98 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5XQP
| Crystal structure of Notched-fin eelpout type III antifreeze protein (NFE6, AFP), P212121 form | Descriptor: | Ice-structuring protein, SULFATE ION | Authors: | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|
5XQU
| Crystal structure of Notched-fin eelpout type III antifreeze protein A20I mutant (NFE6, AFP), P212121 form | Descriptor: | Ice-structuring protein | Authors: | Adachi, M, Shimizu, R, Shibazaki, C, Kondo, H, Tsuda, S. | Deposit date: | 2017-06-07 | Release date: | 2018-05-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | Polypentagonal ice-like water networks emerge solely in an activity-improved variant of ice-binding protein Proc. Natl. Acad. Sci. U.S.A., 115, 2018
|
|