7CFA
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7CO1
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![BU of 7co1 by Molmil](/molmil-images/mine/7co1) | Crystal structure of SMAD2 in complex with wild-type CBP | Descriptor: | CREB-binding protein, Mothers against decapentaplegic homolog 2 | Authors: | Miyazono, K, Wada, H, Ito, T, Tanokura, M. | Deposit date: | 2020-08-03 | Release date: | 2020-11-25 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structural basis for transcriptional coactivator recognition by SMAD2 in TGF-beta signaling. Sci.Signal., 13, 2020
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1WST
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![BU of 1wst by Molmil](/molmil-images/mine/1wst) | Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus | Descriptor: | PYRIDOXAL-5'-PHOSPHATE, multiple substrate aminotransferase | Authors: | Lee, W.C, Manabe, F, Nemoto, N, Tamakoshi, M, Tanokura, M, Yamagishi, A. | Deposit date: | 2004-11-10 | Release date: | 2005-10-25 | Last modified: | 2021-11-10 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Crystal structure of multiple substrate aminotransferase (MsAT) from Thermococcus profundus To be Published
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1J0T
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![BU of 1j0t by Molmil](/molmil-images/mine/1j0t) | The solution structure of molt-inhibiting hormone from the kuruma prawn | Descriptor: | MOLT-INHIBITING HORMONE | Authors: | Katayama, H, Nagata, K, Ohira, T, Yumoto, F, Tanokura, M, Nagasawa, H. | Deposit date: | 2002-11-22 | Release date: | 2002-12-11 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | The solution structure of molt-inhibiting hormone from the Kuruma prawn Marsupenaeus japonicus J.Biol.Chem., 278, 2003
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7DZ5
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![BU of 7dz5 by Molmil](/molmil-images/mine/7dz5) | Crystal structures of D-allulose 3-epimerase with D-sorbose from Sinorhizobium fredii | Descriptor: | D-sorbose, D-tagatose 3-epimerase, MAGNESIUM ION, ... | Authors: | Zhu, Z.L, Miyakawa, T, Tanokura, M, Lu, F.P, Qin, H.-M. | Deposit date: | 2021-01-23 | Release date: | 2022-08-03 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Substantial Improvement of an Epimerase for the Synthesis of D-Allulose by Biosensor-Based High-Throughput Microdroplet Screening Angew.Chem.Int.Ed.Engl., 2023
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7WAF
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![BU of 7waf by Molmil](/molmil-images/mine/7waf) | Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg) | Descriptor: | 4x(beta-Asp-Arg), ARGININE, Cyanophycin synthase, ... | Authors: | Miyakawa, T, Yang, J, Kawasaki, M, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M. | Deposit date: | 2021-12-14 | Release date: | 2022-09-07 | Last modified: | 2022-09-14 | Method: | ELECTRON MICROSCOPY (2.52 Å) | Cite: | Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase. Nat Commun, 13, 2022
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7WAC
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![BU of 7wac by Molmil](/molmil-images/mine/7wac) | Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) | Descriptor: | Cyanophycin synthase | Authors: | Kawasaki, M, Miyakawa, T, Yang, J, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M. | Deposit date: | 2021-12-14 | Release date: | 2022-09-07 | Last modified: | 2024-06-26 | Method: | ELECTRON MICROSCOPY (2.91 Å) | Cite: | Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase. Nat Commun, 13, 2022
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7WAD
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![BU of 7wad by Molmil](/molmil-images/mine/7wad) | Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS | Descriptor: | Cyanophycin synthase, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER | Authors: | Kawasaki, M, Miyakawa, T, Yang, J, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M. | Deposit date: | 2021-12-14 | Release date: | 2022-09-07 | Last modified: | 2024-06-26 | Method: | ELECTRON MICROSCOPY (2.96 Å) | Cite: | Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase. Nat Commun, 13, 2022
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7WAE
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![BU of 7wae by Molmil](/molmil-images/mine/7wae) | Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate | Descriptor: | 4x(beta-Asp-Arg), ARGININE, ASPARTIC ACID, ... | Authors: | Miyakawa, T, Yang, J, Kawasaki, M, Adachi, N, Fujii, A, Miyauchi, Y, Muramatsu, T, Moriya, T, Senda, T, Tanokura, M. | Deposit date: | 2021-12-14 | Release date: | 2022-09-07 | Last modified: | 2022-09-14 | Method: | ELECTRON MICROSCOPY (2.64 Å) | Cite: | Structural bases for aspartate recognition and polymerization efficiency of cyanobacterial cyanophycin synthetase. Nat Commun, 13, 2022
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3ORY
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![BU of 3ory by Molmil](/molmil-images/mine/3ory) | Crystal structure of Flap endonuclease 1 from hyperthermophilic archaeon Desulfurococcus amylolyticus | Descriptor: | PHOSPHATE ION, flap endonuclease 1 | Authors: | Mase, T, Kubota, K, Miyazono, K, Kawarabayashii, Y, Tanokura, M. | Deposit date: | 2010-09-08 | Release date: | 2011-02-09 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure of flap endonuclease 1 from the hyperthermophilic archaeon Desulfurococcus amylolyticus Acta Crystallogr.,Sect.F, 67, 2011
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3OV2
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![BU of 3ov2 by Molmil](/molmil-images/mine/3ov2) | Curcumin synthase 1 from Curcuma longa | Descriptor: | 1,2-ETHANEDIOL, Curcumin synthase, MALONATE ION | Authors: | Katsuyama, Y, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S. | Deposit date: | 2010-09-15 | Release date: | 2010-12-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.32 Å) | Cite: | A hydrophobic cavity discovered in a curcumin synthase facilitates utilization of a beta-keto acid as an extender substrate for the atypical type III polyleteide synthase To be Published
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3OIT
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![BU of 3oit by Molmil](/molmil-images/mine/3oit) | Crystal structure of curcuminoid synthase CUS from Oryza sativa | Descriptor: | Os07g0271500 protein | Authors: | Miyazono, K, Um, J, Imai, F.L, Katsuyama, Y, Ohnishi, Y, Horinouchi, S, Tanokura, M. | Deposit date: | 2010-08-19 | Release date: | 2010-10-20 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of curcuminoid synthase CUS from Oryza sativa Proteins, 79, 2011
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3OV3
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![BU of 3ov3 by Molmil](/molmil-images/mine/3ov3) | G211F mutant of curcumin synthase 1 from Curcuma longa | Descriptor: | Curcumin synthase, MALONATE ION | Authors: | Katsuyama, Y, Miyazono, K, Tanokura, M, Ohnishi, Y, Horinouchi, S. | Deposit date: | 2010-09-15 | Release date: | 2010-12-08 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | A hydrophobic cavity discovered in a curcumin synthase facilitates utilization of a beta-keto acid as an extender substrate for the atypical type III polyleteide synthase To be Published
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4TWL
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![BU of 4twl by Molmil](/molmil-images/mine/4twl) | Crystal structure of dioscorin complexed with ascorbate | Descriptor: | ASCORBIC ACID, Dioscorin 5, SULFATE ION | Authors: | Xue, Y.L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2014-07-01 | Release date: | 2015-04-01 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase Mol Plant, 8, 2015
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3MGF
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![BU of 3mgf by Molmil](/molmil-images/mine/3mgf) | Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 | Descriptor: | Fluorescent protein | Authors: | Ebisawa, T, Yamamura, A, Ohtsuka, J, Kameda, Y, Hayakawa, K, Nagata, K, Tanokura, M. | Deposit date: | 2010-04-06 | Release date: | 2011-03-16 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Monomeric Kusabira-Orange (MKO), Orange-Emitting GFP-like Protein, at pH 7.5 To be Published
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4TWM
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![BU of 4twm by Molmil](/molmil-images/mine/4twm) | Crystal structure of dioscorin from Dioscorea japonica | Descriptor: | Dioscorin 5, SULFATE ION | Authors: | Xue, Y.L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2014-07-01 | Release date: | 2015-04-01 | Last modified: | 2020-01-29 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Yam Tuber Storage Protein Reduces Plant Oxidants Using the Coupled Reactions as Carbonic Anhydrase and Dehydroascorbate Reductase Mol Plant, 8, 2015
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5GMT
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5H3E
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![BU of 5h3e by Molmil](/molmil-images/mine/5h3e) | Crystal structure of mouse isocitrate dehydrogenases 2 K256Q mutant complexed with isocitrate | Descriptor: | ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ... | Authors: | Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2016-10-23 | Release date: | 2017-08-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.21 Å) | Cite: | Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics Sci Rep, 7, 2017
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5H3F
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![BU of 5h3f by Molmil](/molmil-images/mine/5h3f) | Crystal structure of mouse isocitrate dehydrogenases 2 complexed with isocitrate | Descriptor: | ISOCITRIC ACID, Isocitrate dehydrogenase [NADP], mitochondrial, ... | Authors: | Xu, Y, Liu, L, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2016-10-23 | Release date: | 2017-08-30 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (3.29 Å) | Cite: | Studies on the regulatory mechanism of isocitrate dehydrogenase 2 using acetylation mimics Sci Rep, 7, 2017
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5DNW
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![BU of 5dnw by Molmil](/molmil-images/mine/5dnw) | Crystal structure of KAI2-like protein from Striga (apo state 1) | Descriptor: | 1,2-ETHANEDIOL, FORMIC ACID, SODIUM ION, ... | Authors: | Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2015-09-10 | Release date: | 2016-08-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.02 Å) | Cite: | Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica Sci Rep, 6, 2016
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5DNU
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![BU of 5dnu by Molmil](/molmil-images/mine/5dnu) | Crystal structure of Striga KAI2-like protein in complex with karrikin | Descriptor: | 1,2-ETHANEDIOL, 3-methyl-2H-furo[2,3-c]pyran-2-one, BENZOIC ACID, ... | Authors: | Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2015-09-10 | Release date: | 2016-08-17 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.2 Å) | Cite: | Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica Sci Rep, 6, 2016
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5B0H
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![BU of 5b0h by Molmil](/molmil-images/mine/5b0h) | CRYSTAL STRUCTURE OF HUMAN LEUKOCYTE CELL-DERIVED CHEMOTAXIN 2 | Descriptor: | Leukocyte cell-derived chemotaxin-2, SULFATE ION, ZINC ION | Authors: | Zheng, H, Miyakawa, T, Sawano, Y, Tanokura, M. | Deposit date: | 2015-10-29 | Release date: | 2016-07-06 | Last modified: | 2020-02-26 | Method: | X-RAY DIFFRACTION (1.94 Å) | Cite: | Crystal Structure of Human Leukocyte Cell-derived Chemotaxin 2 (LECT2) Reveals a Mechanistic Basis of Functional Evolution in a Mammalian Protein with an M23 Metalloendopeptidase Fold J.Biol.Chem., 291, 2016
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1DET
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![BU of 1det by Molmil](/molmil-images/mine/1det) | RIBONUCLEASE T1 CARBOXYMETHYLATED AT GLU 58 IN COMPLEX WITH 2'GMP | Descriptor: | GUANOSINE-2'-MONOPHOSPHATE, RIBONUCLEASE T1, SODIUM ION | Authors: | Ishikawa, K, Suzuki, E, Tanokura, M, Takahashi, K. | Deposit date: | 1996-02-20 | Release date: | 1996-07-11 | Last modified: | 2024-06-05 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal structure of ribonuclease T1 carboxymethylated at Glu58 in complex with 2'-GMP. Biochemistry, 35, 1996
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5DNV
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![BU of 5dnv by Molmil](/molmil-images/mine/5dnv) | Crystal structure of KAI2-like protein from Striga (apo state 2) | Descriptor: | BENZOIC ACID, FORMIC ACID, ShKAI2iB | Authors: | Xu, Y, Miyakawa, T, Nakamura, A, Tanokura, M. | Deposit date: | 2015-09-10 | Release date: | 2016-08-17 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (2.65 Å) | Cite: | Structural basis of unique ligand specificity of KAI2-like protein from parasitic weed Striga hermonthica Sci Rep, 6, 2016
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2JV4
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![BU of 2jv4 by Molmil](/molmil-images/mine/2jv4) | Structure Characterisation of PINA WW Domain and Comparison with other Group IV WW Domains, PIN1 and ESS1 | Descriptor: | Peptidyl-prolyl cis/trans isomerase | Authors: | Ng, C.A, Kato, Y, Tanokura, M, Brownlee, R.T.C. | Deposit date: | 2007-09-11 | Release date: | 2007-10-16 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structural characterisation of PinA WW domain and a comparison with other Group IV WW domains, Pin1 and Ess1 Biochim.Biophys.Acta, 1784, 2008
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