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7XI9
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BU of 7xi9 by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-ordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.52 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022
7XIB
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BU of 7xib by Molmil
Cryo-EM structure of human DNMT1 (aa:351-1616) in complex with ubiquitinated H3 and hemimethylated DNA analog (CXXC-disordered form)
Descriptor: DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3'), DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3'), DNA (cytosine-5)-methyltransferase 1, ...
Authors:Onoda, H, Kikuchi, A, Kori, S, Yoshimi, S, Yamagata, A, Arita, K.
Deposit date:2022-04-12
Release date:2022-11-30
Last modified:2024-07-03
Method:ELECTRON MICROSCOPY (2.23 Å)
Cite:Structural basis for activation of DNMT1.
Nat Commun, 13, 2022
8YTO
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BU of 8yto by Molmil
Single-chain Fv antibody of E11 complex with NP-glycine
Descriptor: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, ...
Authors:Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M.
Deposit date:2024-03-26
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.04 Å)
Cite:Affinity-matured antibody with a disulfide bond in H-CDR3 loop.
Arch.Biochem.Biophys., 758, 2024
8YTN
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BU of 8ytn by Molmil
Single-chain Fv antibody of E11
Descriptor: GLYCEROL, Single-chain Fv antibody of E11
Authors:Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M.
Deposit date:2024-03-26
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Affinity-matured antibody with a disulfide bond in H-CDR3 loop.
Arch.Biochem.Biophys., 758, 2024
8YTP
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BU of 8ytp by Molmil
Single-chain Fv antibody of E11 complex with NP-glycine under reducing conditions
Descriptor: 2-[2-(3-nitro-4-oxidanyl-phenyl)ethanoylamino]ethanoic acid, Single-chain Fv antibody of E11
Authors:Yoshida, M, Hanazono, Y, Numoto, N, Ito, N, Oda, M.
Deposit date:2024-03-26
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Affinity-matured antibody with a disulfide bond in H-CDR3 loop.
Arch.Biochem.Biophys., 758, 2024
6IXZ
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BU of 6ixz by Molmil
X-ray structure of sortase C from Clostridium perfringens SM101
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
6IXY
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BU of 6ixy by Molmil
X-ray structure of major pilin from C. perfringens SM101
Descriptor: pilin
Authors:Kamitori, S, Tamai, E.
Deposit date:2018-12-12
Release date:2019-08-14
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.72 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
7D6P
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BU of 7d6p by Molmil
X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.
Descriptor: GLYCEROL, SULFATE ION, Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
7D6T
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BU of 7d6t by Molmil
X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif.
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
5XCC
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BU of 5xcc by Molmil
X-ray structure of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
5XCB
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BU of 5xcb by Molmil
X-ray structure of domains D1 and D2 of Clostridium perfringens pili protein CppA
Descriptor: Probable surface protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2017-03-22
Release date:2018-02-28
Last modified:2019-08-14
Method:X-RAY DIFFRACTION (2.14 Å)
Cite:Structures of major pilins in Clostridium perfringens demonstrate dynamic conformational change.
Acta Crystallogr D Struct Biol, 75, 2019
2ZPS
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BU of 2zps by Molmil
Crystal structure of anionic trypsin isoform 3 from chum salmon
Descriptor: Anionic trypsin, BENZAMIDINE, CALCIUM ION
Authors:Iyaguchi, D, Toyota, E.
Deposit date:2008-07-28
Release date:2009-07-28
Last modified:2016-09-28
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A structural comparison of three isoforms of anionic trypsin from chum salmon (Oncorhynchus keta).
Acta Crystallogr.,Sect.D, 65, 2009
2ZPQ
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BU of 2zpq by Molmil
Crystal structure of anionic trypsin isoform 1 from chum salmon
Descriptor: Anionic trypsin, BENZAMIDINE, CALCIUM ION, ...
Authors:Iyaguchi, D, Toyota, E.
Deposit date:2008-07-28
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:A structural comparison of three isoforms of anionic trypsin from chum salmon (Oncorhynchus keta).
Acta Crystallogr.,Sect.D, 65, 2009
2ZPR
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BU of 2zpr by Molmil
Crystal structure of anionic trypsin isoform 2 from chum salmon
Descriptor: Anionic trypsin, BENZAMIDINE, CALCIUM ION
Authors:Iyaguchi, D, Toyota, E.
Deposit date:2008-07-28
Release date:2009-07-28
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:A structural comparison of three isoforms of anionic trypsin from chum salmon (Oncorhynchus keta).
Acta Crystallogr.,Sect.D, 65, 2009
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