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4CS5
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BU of 4cs5 by Molmil
Crystal Structure of PCNA from Litopenaeus vannamei
Descriptor: PROLIFERATING CELL NUCLEAR ANTIGEN
Authors:Carrasco-Miranda, J.S, Lopez-Zavala, A.A, De-La-Mora, E, Rudino-Pinera, E, Brieba, L.G, Sotelo-Mundo, R.R.
Deposit date:2014-03-04
Release date:2014-04-23
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with Wssv DNA Polymerase Pip-Box.
Plos One, 9, 2014
5A6D
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BU of 5a6d by Molmil
Proliferating Cell Nuclear Antigen, PCNA, from Thermococcus gammatolerans
Descriptor: DNA POLYMERASE SLIDING CLAMP
Authors:Venancio-Landeros, A, Cardona-Felix, C.S, Rudino-Pinera, E.
Deposit date:2015-06-25
Release date:2016-07-06
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Cloning, recombinant production and crystallographic structure of Proliferating Cell Nuclear Antigen from radioresistant archaeon Thermococcus gammatolerans.
Biochem Biophys Rep, 8, 2016
7SO8
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BU of 7so8 by Molmil
Crystal structure of Glutathione S-Transferase from Shrimp Litopenaeus vannamei in complex with silver ions and a molecules of Glutathione binding in G-site and H-site
Descriptor: GLUTATHIONE, Glutathione transferase, PENTAETHYLENE GLYCOL, ...
Authors:Escudero-Garcia, A, Rudino-Pinera, E, Miranda-Blancas, R.
Deposit date:2021-10-29
Release date:2022-11-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inhibition of GST class Mu of the shrimp Litopenaeus vannamei by binding silver ions in H-site.
To Be Published
3EJ6
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BU of 3ej6 by Molmil
Neurospora Crassa Catalase-3 Crystal Structure
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Catalase-3, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz, A, Valdes, V.-J, Rudino-Pinera, E, Horjales, E, Hansberg, W.
Deposit date:2008-09-17
Release date:2009-01-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure-Function Relationships in Fungal Large-Subunit Catalases
J.Mol.Biol., 386, 2008
1JT9
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BU of 1jt9 by Molmil
Structure of the mutant F174A T form of the Glucosamine-6-Phosphate deaminase from E.coli
Descriptor: Glucosamine-6-Phosphate deaminase
Authors:Bustos-Jaimes, I, Sosa-Peinado, A, Rudino-Pinera, E, Horjales, E, Calcagno, M.L.
Deposit date:2001-08-20
Release date:2002-02-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:On the role of the conformational flexibility of the active-site lid on the allosteric kinetics of glucosamine-6-phosphate deaminase.
J.Mol.Biol., 319, 2002
7KGC
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BU of 7kgc by Molmil
Crystal structure of a perchloric acid-soluble protein (PSP) from Trichomonas vaginalis at 1.95 A
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Putative translation initiation inhibitor
Authors:Diaz-Vilchis, A, Rudino-Pinera, E, Alvarez-Sanchez, M.E, Arreola, R.
Deposit date:2020-10-16
Release date:2021-10-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A Putative New Role of Tv-PSP1 Recognizes IRE and ERE Hairpin Structures from Trichomonas vaginalis.
Pathogens, 12, 2023
8DWR
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BU of 8dwr by Molmil
Crystal structure of the L333V variant of catalase-peroxidase from Mycobacterium tuberculosis
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Diaz-Vilchis, A, Uribe-Vazquez, B, Avila-Linares, A, Rudino-Pinera, E, Soberon, X.
Deposit date:2022-08-01
Release date:2023-08-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Characterization of a catalase-peroxidase variant (L333V-KatG) identified in an INH-resistant Mycobacterium tuberculosis clinical isolate.
Biochem Biophys Rep, 37, 2024
4UOH
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BU of 4uoh by Molmil
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with ADP
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Guevara-Hernandez, E, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.007 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
6TYR
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BU of 6tyr by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with a close conformation of its beta-hairpin
Descriptor: CITRIC ACID, COPPER (II) ION, GLYCEROL, ...
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2019-08-09
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.813 Å)
Cite:The beta-hairpin from the Thermus thermophilus HB27 laccase works as a pH-dependent switch to regulate laccase activity.
J.Struct.Biol., 213, 2021
4V1D
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BU of 4v1d by Molmil
Ternary complex among two human derived single chain antibody fragments and Cn2 toxin from scorpion Centruroides noxius.
Descriptor: BETA-MAMMAL TOXIN CN2, SINGLE CHAIN ANTIBODY FRAGMENT LR, HEAVY CHAIN, ...
Authors:Riano-Umbarila, L, Serrano-Posada, H, Rojas-Trejo, S, Rudino-Pinera, E, Becerril, B.
Deposit date:2014-09-25
Release date:2015-10-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Optimal Neutralization of Centruroides Noxius Venom is Understood Through a Structural Complex between Two Antibody Fragments and the Cn2 Toxin.
J.Biol.Chem., 291, 2016
4V2L
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BU of 4v2l by Molmil
Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 3.4 MGy, focused in disulfide bonds.
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
4V2M
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BU of 4v2m by Molmil
Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 34 MGy, focused in disulfide bonds.
Descriptor: ACETATE ION, GLYCEROL, SULFATE ION, ...
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.841 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
4V2N
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BU of 4v2n by Molmil
Crystallographic structure of thioredoxin from Litopenaeus vannamei: Radiation damage effect at 85 MGy, focused in disulfide bonds
Descriptor: ACETATE ION, SULFATE ION, THIOREDOXIN
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-10-10
Release date:2015-01-14
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Crystallographic Studies Evidencing the High Energy Tolerance to Disrupting the Interface Disulfide Bond of Thioredoxin 1 from White Leg Shrimp Litopenaeus Vannamei.
Molecules, 19, 2014
5WHQ
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BU of 5whq by Molmil
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.9 A
Descriptor: Catalase-peroxidase, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
Deposit date:2017-07-18
Release date:2018-01-17
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
5WHS
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BU of 5whs by Molmil
Crystal structure of the catalase-peroxidase from Neurospora crassa at 2.6 A
Descriptor: Catalase-peroxidase, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz-Vilchis, A, Vega-Garcia, V, Rudino-Pinera, E, Hansberg, W.
Deposit date:2017-07-18
Release date:2018-01-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure, kinetics, molecular and redox properties of a cytosolic and developmentally regulated fungal catalase-peroxidase.
Arch. Biochem. Biophys., 640, 2018
4UOF
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BU of 4uof by Molmil
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dADP
Descriptor: 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from the Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4UOG
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BU of 4uog by Molmil
Crystallographic structure of nucleoside diphosphate kinase from Litopenaeus vannamei complexed with dCDP
Descriptor: DEOXYCYTIDINE DIPHOSPHATE, MAGNESIUM ION, NUCLEOSIDE DIPHOSPHATE KINASE
Authors:Lopez-Zavala, A.A, Stojanoff, V, Rudino-Pinera, E, Sotelo-Mundo, R.R.
Deposit date:2014-06-03
Release date:2014-09-10
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Nucleoside Diphosphate Kinase from Pacific Shrimp (Litopenaeus Vannamei) in Binary Complexes with Purine and Pyrimidine Nucleoside Diphosphates
Acta Crystallogr.,Sect.F, 79, 2014
4UM4
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BU of 4um4 by Molmil
STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM ESCHERICHIA COLI IN COMPLEX WITH SULFATE
Descriptor: INORGANIC PYROPHOSPHATASE, SULFATE ION
Authors:Campos-Acevedo, A.A, Rudino-Pinera, E.
Deposit date:2014-05-15
Release date:2014-11-26
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:First attempts to crystallize a non-homogeneous sample of thioredoxin from Litopenaeus vannamei: What to do when you have diffraction data of a protein that is not the target?
Biochem Biophys Rep, 8, 2016
1SY7
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BU of 1sy7 by Molmil
Crystal structure of the catalase-1 from Neurospora crassa, native structure at 1.75A resolution.
Descriptor: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE, Catalase 1, PROTOPORPHYRIN IX CONTAINING FE
Authors:Diaz, A, Horjales, E, Rudino-Pinera, E, Arreola, R, Hansberg, W.
Deposit date:2004-04-01
Release date:2004-10-12
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Unusual Cys-Tyr covalent bond in a large catalase
J.Mol.Biol., 342, 2004
5AN1
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BU of 5an1 by Molmil
Crystallographic structure of the Glutathione S-Transferase from Litopenaeus vannamei complexed with Glutathione
Descriptor: GLUTATHIONE, GLUTATHIONE S-TRANSFERASE
Authors:Juarez-Martinez, A.B, Sotelo-Mundo, R, Rudino-Pinera, E.
Deposit date:2015-09-02
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of a class-mu glutathione S-transferase from whiteleg shrimp Litopenaeus vannamei: structural changes in the xenobiotic binding H-site may alter the spectra of molecules bound.
J. Biochem. Mol. Toxicol., 31, 2017
5AFA
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BU of 5afa by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 complexed with Ag, crystal of the holoenzyme soaked for 30 m in 5 mM AgNO3 at 278 K.
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, ...
Authors:Jimenez-Arroyo, N, Rudino-Pinera, E.
Deposit date:2015-01-19
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Structural Function of the Methionine-Rich Beta-Hairpin in the Laccase for T. Thermophilus.
To be Published
6PWQ
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BU of 6pwq by Molmil
Crystal structure of Levansucrase from Bacillus subtilis mutant S164A at 2.6 A
Descriptor: CALCIUM ION, GLYCEROL, Glycoside hydrolase family 68 protein, ...
Authors:Diaz-Vilchis, A, Rodriguez-Alegria, M.E, Ortiz-Soto, M.E, Rudino-Pinera, E, Lopez-Munguia, A.
Deposit date:2019-07-23
Release date:2020-07-22
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Implications of the mutation S164A on Bacillus subtilis levansucrase product specificity and insights into protein interactions acting upon levan synthesis.
Int.J.Biol.Macromol., 161, 2020
6Q29
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BU of 6q29 by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 with an open conformation of beta-hairpin (Average deposted dose 2.5 MGy)
Descriptor: COPPER (II) ION, Laccase, TETRAETHYLENE GLYCOL, ...
Authors:Miranda-Blancas, R, Rudino-Pinera, E.
Deposit date:2019-08-07
Release date:2020-08-12
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.702 Å)
Cite:The beta-hairpin from the Thermus thermophilus HB27 laccase works as a pH-dependent switch to regulate laccase activity.
J.Struct.Biol., 213, 2021
5K5K
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BU of 5k5k by Molmil
Crystal structure of laccasse from Thermus thermophilus HB27 (ascorbic acid 10 min)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
Authors:Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
Deposit date:2016-05-23
Release date:2017-06-07
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.796 Å)
Cite:Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published
5K15
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BU of 5k15 by Molmil
Crystal structure of laccase from Thermus thermophilus HB27 (Cu2PO, 8 min)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Laccase
Authors:Diaz-Vilchis, A, Ruiz-Arellano, R.R, Rosas-Benitez, E, Rudino-Pinera, E.
Deposit date:2016-05-17
Release date:2017-05-24
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Preserving metallic sites affected by radiation damage: the CuT2 case in Thermus thermophilus multicopper oxidase
To be Published

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