2ZHG
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![BU of 2zhg by Molmil](/molmil-images/mine/2zhg) | Crystal structure of SoxR in complex with DNA | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, DNA (5'-D(*DGP*DCP*DCP*DTP*DCP*DAP*DAP*DGP*DTP*DTP*DAP*DAP*DCP*DTP*DTP*DGP*DAP*DGP*DGP*DC)-3'), FE2/S2 (INORGANIC) CLUSTER, ... | Authors: | Watanabe, S, Kita, A, Kobayashi, K, Miki, K. | Deposit date: | 2008-02-05 | Release date: | 2008-03-25 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA Proc.Natl.Acad.Sci.Usa, 105, 2008
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2ZHH
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![BU of 2zhh by Molmil](/molmil-images/mine/2zhh) | Crystal structure of SoxR | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, FE2/S2 (INORGANIC) CLUSTER, Redox-sensitive transcriptional activator soxR | Authors: | Watanabe, S, Kita, A, Kobayashi, K, Miki, K. | Deposit date: | 2008-02-05 | Release date: | 2008-03-25 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA Proc.Natl.Acad.Sci.Usa, 105, 2008
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3A43
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![BU of 3a43 by Molmil](/molmil-images/mine/3a43) | Crystal structure of HypA | Descriptor: | Hydrogenase nickel incorporation protein hypA, ZINC ION | Authors: | Watanabe, S, Arai, T, Matsumi, R, Aromi, H, Imanaka, T, Miki, K. | Deposit date: | 2009-06-30 | Release date: | 2009-10-06 | Last modified: | 2016-12-21 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of HypA, a nickel-binding metallochaperone for [NiFe] hydrogenase maturation. J.Mol.Biol., 394, 2009
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7C0D
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![BU of 7c0d by Molmil](/molmil-images/mine/7c0d) | |
7C0E
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![BU of 7c0e by Molmil](/molmil-images/mine/7c0e) | |
7C0C
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7WWX
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![BU of 7wwx by Molmil](/molmil-images/mine/7wwx) | Crystal structure of Herbaspirillum huttiense L-arabinose 1-dehydrogenase (NAD bound form) | Descriptor: | DI(HYDROXYETHYL)ETHER, NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family), NICOTINAMIDE-ADENINE-DINUCLEOTIDE | Authors: | Matsubara, R, Yoshiwara, K, Watanabe, Y, Watanabe, S. | Deposit date: | 2022-02-14 | Release date: | 2022-03-30 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.36 Å) | Cite: | Crystal structure of L-arabinose 1-dehydrogenase as a short-chain reductase/dehydrogenase protein. Biochem.Biophys.Res.Commun., 604, 2022
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6IGI
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![BU of 6igi by Molmil](/molmil-images/mine/6igi) | Crystal structure of FT condition 2 | Descriptor: | 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T | Authors: | Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K. | Deposit date: | 2018-09-25 | Release date: | 2019-12-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.33 Å) | Cite: | High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering. Iscience, 21, 2019
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6IGH
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![BU of 6igh by Molmil](/molmil-images/mine/6igh) | Crystal structure of FT condition3 | Descriptor: | 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T | Authors: | Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K. | Deposit date: | 2018-09-25 | Release date: | 2019-12-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.01 Å) | Cite: | High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering. Iscience, 21, 2019
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6IGG
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![BU of 6igg by Molmil](/molmil-images/mine/6igg) | Crystal structure of FT condition 1 | Descriptor: | 1,2-ETHANEDIOL, Protein FLOWERING LOCUS T | Authors: | Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K. | Deposit date: | 2018-09-25 | Release date: | 2019-12-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1 Å) | Cite: | High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering. Iscience, 21, 2019
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6IGJ
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![BU of 6igj by Molmil](/molmil-images/mine/6igj) | Crystal structure of FT condition 4 | Descriptor: | MAGNESIUM ION, Protein FLOWERING LOCUS T | Authors: | Watanabe, S, Nakamura, Y, Kanehara, K, Inaba, K. | Deposit date: | 2018-09-25 | Release date: | 2019-12-25 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.501 Å) | Cite: | High-Resolution Crystal Structure of Arabidopsis FLOWERING LOCUS T Illuminates Its Phospholipid-Binding Site in Flowering. Iscience, 21, 2019
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5AZZ
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![BU of 5azz by Molmil](/molmil-images/mine/5azz) | Crystal structure of seleno-insulin | Descriptor: | Insulin A chain, Insulin B chain | Authors: | Watanabe, S, Okumura, M, Arai, K, Takei, T, Asahina, Y, Hojo, H, Iwaoka, M, Inaba, K. | Deposit date: | 2015-10-23 | Release date: | 2017-05-03 | Last modified: | 2017-06-14 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Preparation of Selenoinsulin as a Long-Lasting Insulin Analogue. Angew. Chem. Int. Ed. Engl., 56, 2017
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5AYL
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![BU of 5ayl by Molmil](/molmil-images/mine/5ayl) | Crystal structure of ERdj5 form II | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, DnaJ homolog subfamily C member 10 | Authors: | Watanabe, S, Maegawa, K, Inaba, K. | Deposit date: | 2015-08-22 | Release date: | 2017-02-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation To Be Published
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5AYK
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![BU of 5ayk by Molmil](/molmil-images/mine/5ayk) | Crystal structure of ERdj5 form I | Descriptor: | 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE, CHLORIDE ION, DnaJ homolog subfamily C member 10 | Authors: | Watanabe, S, Maegawa, K, Inaba, K. | Deposit date: | 2015-08-22 | Release date: | 2017-02-15 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Highly dynamic nature of ERdj5 is essential for enhancement of the ER associated degradation To Be Published
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7CNQ
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![BU of 7cnq by Molmil](/molmil-images/mine/7cnq) | Crystal structure of Agrobacterium tumefaciens aconitase X (holo-form) | Descriptor: | (2~{S},3~{R})-3-oxidanylpyrrolidine-2-carboxylic acid, FE2/S2 (INORGANIC) CLUSTER, cis-3-hydroxy-L-proline dehydratase | Authors: | Murase, Y, Watanabe, Y, Watanabe, S. | Deposit date: | 2020-08-03 | Release date: | 2021-06-16 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol, 4, 2021
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7CNR
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7CNP
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![BU of 7cnp by Molmil](/molmil-images/mine/7cnp) | |
7CNS
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![BU of 7cns by Molmil](/molmil-images/mine/7cns) | Crystal structure of Thermococcus kodakaraensis aconitase X (holo-form) | Descriptor: | (3R)-3-HYDROXY-3-METHYL-5-(PHOSPHONOOXY)PENTANOIC ACID, DUF521 domain-containing protein, FE3-S4 CLUSTER, ... | Authors: | Murase, Y, Watanabe, Y, Watanabe, S. | Deposit date: | 2020-08-03 | Release date: | 2021-06-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.902 Å) | Cite: | Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol, 4, 2021
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7D2R
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![BU of 7d2r by Molmil](/molmil-images/mine/7d2r) | Crystal structure of Agrobacterium tumefaciens aconitase X mutant - S449C/C510V | Descriptor: | FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, SODIUM ION, ... | Authors: | Murase, Y, Watanabe, Y, Watanabe, S. | Deposit date: | 2020-09-17 | Release date: | 2021-06-16 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (2.005 Å) | Cite: | Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol, 4, 2021
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8XWK
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8Y4J
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8Y4B
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8Y11
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8Y46
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![BU of 8y46 by Molmil](/molmil-images/mine/8y46) | Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase bound to L-KDF or L-2,4-DKDF | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DI(HYDROXYETHYL)ETHER, L-2,4-diketo-3-deoxyfuconate, ... | Authors: | Akagashi, M, Watanabe, S. | Deposit date: | 2024-01-30 | Release date: | 2024-07-10 | Method: | X-RAY DIFFRACTION (1.29 Å) | Cite: | Crystal structure of L-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a alpha-furanosyl hemiketal of substrates. Sci Rep, 14, 2024
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5VKG
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![BU of 5vkg by Molmil](/molmil-images/mine/5vkg) | Solution-state NMR structural ensemble of human Tsg101 UEV in complex with tenatoprazole | Descriptor: | 4-methoxy-1-(5-methoxy-3H-imidazo[4,5-b]pyridin-2-yl)-3,5-dimethyl-2-(sulfanylmethyl)pyridin-1-ium, Tumor susceptibility gene 101 protein | Authors: | Strickland, M, Ehrlich, L.S, Watanabe, S, Khan, M, Strub, M.-P, Luan, C.H, Powell, M.D, Leis, J, Tjandra, N, Carter, C. | Deposit date: | 2017-04-21 | Release date: | 2017-11-15 | Last modified: | 2023-06-14 | Method: | SOLUTION NMR | Cite: | Tsg101 chaperone function revealed by HIV-1 assembly inhibitors. Nat Commun, 8, 2017
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