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5H7J
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Crystal structure of Elongation factor 2
分子名称: Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
著者Tanzawa, T, Kato, K, Uchiumi, T, Yao, M.
登録日2016-11-18
公開日2018-02-21
最終更新日2018-05-02
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion
Nucleic Acids Res., 46, 2018
5ZX8
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BU of 5zx8 by Molmil
Crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CITRATE ANION, Peptidyl-tRNA hydrolase
著者Matsumoto, A, Uehara, U, Shimizu, Y, Ueda, T, Uchiumi, T, Ito, K.
登録日2018-05-18
公開日2018-09-26
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献High-resolution crystal structure of peptidyl-tRNA hydrolase from Thermus thermophilus.
Proteins, 87, 2019
5AWH
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BU of 5awh by Molmil
Rhodobacter sphaeroides Argonaute in complex with guide RNA/target DNA heteroduplex
分子名称: DNA (5'-D(*CP*GP*AP*GP*GP*TP*AP*GP*TP*AP*GP*GP*TP*TP*GP*TP*AP*A)-3'), MAGNESIUM ION, RNA (5'-D(P*UP*UP*AP*CP*AP*AP*CP*CP*UP*AP*CP*UP*AP*CP*CP*UP*CP*G)-3'), ...
著者Miyoshi, T, Ito, K, Murakami, R, Uchiumi, T.
登録日2015-07-03
公開日2016-07-06
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for the recognition of guide RNA and target DNA heteroduplex by Argonaute.
Nat Commun, 7, 2016
4BEH
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BU of 4beh by Molmil
Solution structure of human ribosomal protein P1.P2 heterodimer
分子名称: 60S ACIDIC RIBOSOMAL PROTEIN P1, 60S ACIDIC RIBOSOMAL PROTEIN P2
著者Lee, K.M, Yusa, K, Chu, L.O, Wing-Heng Yu, C, Shaw, P.C, Oono, M, Miyoshi, T, Ito, K, Wong, K.B, Uchiumi, T.
登録日2013-03-10
公開日2013-08-14
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Solution Structure of Human P1P2 Heterodimer Provides Insights Into the Role of Eukaryotic Stalk in Recruiting the Ribosome-Inactivating Protein Trichosanthin to the Ribosome.
Nucleic Acids Res., 41, 2013
7CSL
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BU of 7csl by Molmil
Crystal structure of the archaeal EF1A-EF1B complex
分子名称: Elongation factor 1-alpha, Elongation factor 1-beta
著者Suzuki, T, Ito, K, Miyoshi, T, Murakami, R, Uchiumi, T.
登録日2020-08-15
公開日2021-06-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into the Switching Off of the Interaction between the Archaeal Ribosomal Stalk and aEF1A by Nucleotide Exchange Factor aEF1B.
J.Mol.Biol., 433, 2021
5YV5
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BU of 5yv5 by Molmil
Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal ribosome recycling factor aABCE1.
分子名称: ADENOSINE-5'-DIPHOSPHATE, ATPase RIL, Archaeal ribosomal stalk protein aP1, ...
著者Imai, H, Abe, T, Miyoshi, T, Nishikawa, S, Ito, K, Uchiumi, T.
登録日2017-11-24
公開日2018-07-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The ribosomal stalk protein is crucial for the action of the conserved ATPase ABCE1
Nucleic Acids Res., 46, 2018
5YT0
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Crystal structure of the complex of archaeal ribosomal stalk protein aP1 and archaeal translation initiation factor aIF5B
分子名称: Archaeal ribosomal stalk protein aP1, GUANOSINE-5'-DIPHOSPHATE, Probable translation initiation factor IF-2
著者Murakami, R, Singh, C.R, Morris, J, Tang, L, Harmon, I, Miyoshi, T, Ito, K, Asano, K, Uchiumi, T.
登録日2017-11-16
公開日2018-06-27
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.89 Å)
主引用文献The Interaction between the Ribosomal Stalk Proteins and Translation Initiation Factor 5B Promotes Translation Initiation
Mol. Cell. Biol., 38, 2018
5H7K
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BU of 5h7k by Molmil
Crystal structure of Elongation factor 2 GDP-form
分子名称: Elongation factor 2, GUANOSINE-5'-DIPHOSPHATE
著者Tanzawa, T, Kato, K, Uchiumi, T, Yao, M.
登録日2016-11-18
公開日2018-02-21
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.599 Å)
主引用文献The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion
Nucleic Acids Res., 46, 2018
5H7L
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Complex of Elongation factor 2-50S ribosomal protein L12
分子名称: 50S ribosomal protein L12, Elongation factor 2, PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
著者Tanzawa, T, Kato, K, Uchiumi, T, Yao, M.
登録日2016-11-18
公開日2018-02-21
最終更新日2018-05-02
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献The C-terminal helix of ribosomal P stalk recognizes a hydrophobic groove of elongation factor 2 in a novel fashion
Nucleic Acids Res., 46, 2018
5FG3
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BU of 5fg3 by Molmil
Crystal structure of GDP-bound aIF5B from Aeropyrum pernix
分子名称: GUANOSINE-5'-DIPHOSPHATE, Probable translation initiation factor IF-2
著者Murakami, R, Miyoshi, T, Uchiumi, T, Ito, K.
登録日2015-12-20
公開日2016-05-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of translation initiation factor 5B from the crenarchaeon Aeropyrum pernix.
Proteins, 84, 2016
6JI2
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BU of 6ji2 by Molmil
Crystal structure of archaeal ribosomal protein aP1, aPelota, and GTP-bound aEF1A complex
分子名称: Archaeal ribosomal stalk protein aP1, Elongation factor 1-alpha, GUANOSINE-5'-TRIPHOSPHATE, ...
著者Maruyama, K, Imai, H, Kawamura, M, Ishino, S, Ishino, Y, Ito, K, Uchiumi, T.
登録日2019-02-20
公開日2019-11-13
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations.
Sci Rep, 9, 2019
6J3L
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BU of 6j3l by Molmil
Solution structure of the N-terminal extended protuberant domain of eukaryotic ribosomal stalk protein P0
分子名称: 60S acidic ribosomal protein P0
著者Choi, K.H.A, Lee, K.M, Yang, L, Wing-Heng Yu, C, Banfield, D.K, Ito, K, Uchiumi, T, Wong, K.B.
登録日2019-01-04
公開日2019-09-04
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural and Mutagenesis Studies Evince the Role of the Extended Protuberant Domain of Ribosomal Protein uL10 in Protein Translation.
Biochemistry, 58, 2019
3WY9
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BU of 3wy9 by Molmil
Crystal structure of a complex of the archaeal ribosomal stalk protein aP1 and the GDP-bound archaeal elongation factor aEF1alpha
分子名称: 50S ribosomal protein L12, Elongation factor 1-alpha, GUANOSINE-5'-DIPHOSPHATE
著者Ito, K, Honda, T, Suzuki, T, Miyoshi, T, Murakami, R, Yao, M, Uchiumi, T.
登録日2014-08-22
公開日2014-12-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha.
Nucleic Acids Res., 42, 2014
3WYA
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BU of 3wya by Molmil
Crystal structure of GDP-bound EF1alpha from Pyrococcus horikoshii
分子名称: Elongation factor 1-alpha, GUANOSINE-5'-DIPHOSPHATE
著者Ito, K, Honda, T, Suzuki, T, Miyoshi, T, Murakami, R, Yao, M, Uchiumi, T.
登録日2014-08-22
公開日2014-12-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Molecular insights into the interaction of the ribosomal stalk protein with elongation factor 1 alpha.
Nucleic Acids Res., 42, 2014
3WN6
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BU of 3wn6 by Molmil
Crystal structure of alpha-amylase AmyI-1 from Oryza sativa
分子名称: Alpha-amylase, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Ochiai, A, Sugai, H, Harada, K, Tanaka, S, Ishiyama, Y, Ito, K, Tanaka, T, Uchiumi, T, Taniguchi, M, Mitsui, T.
登録日2013-12-05
公開日2014-09-10
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.16 Å)
主引用文献Crystal structure of alpha-amylase from Oryza sativa: molecular insights into enzyme activity and thermostability
Biosci.Biotechnol.Biochem., 78, 2014
3VJR
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BU of 3vjr by Molmil
Crystal structure of Peptidyl-tRNA hydrolase from Escherichia coli in complex with the CCA-acceptor-T[PSI]C domain of tRNA
分子名称: Peptidyl-tRNA hydrolase, tRNA CCA-acceptor
著者Ito, K, Murakami, R, Mochizuki, M, Qi, H, Shimizu, Y, Miura, K.I, Ueda, T, Uchiumi, T.
登録日2011-10-28
公開日2012-09-12
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.
Nucleic Acids Res., 40, 2012
3A1Y
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BU of 3a1y by Molmil
The structure of archaeal ribosomal stalk P1/P0 complex
分子名称: 50S ribosomal protein P1 (L12P), Acidic ribosomal protein P0
著者Naganuma, T, Yao, M, Nomura, N, Yu, J, Uchiumi, T, Tanaka, I.
登録日2009-04-25
公開日2009-11-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Structural basis for translation factor recruitment to the eukaryotic/archaeal ribosomes
J.Biol.Chem., 285, 2010
7VB2
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BU of 7vb2 by Molmil
Solution structure of human ribosomal protein uL11
分子名称: 60S ribosomal protein L12
著者Lee, K.M, Wong, K.B.
登録日2021-08-30
公開日2022-04-20
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The flexible N-terminal motif of uL11 unique to eukaryotic ribosomes interacts with P-complex and facilitates protein translation.
Nucleic Acids Res., 50, 2022
3A1W
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BU of 3a1w by Molmil
Crystal structue of the G domain of T. maritima FeoB iron iransporter
分子名称: Iron(II) transport protein B, SULFATE ION
著者Hattori, M, Ishitani, R, Nureki, O.
登録日2009-04-22
公開日2009-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9001 Å)
主引用文献Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1T
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Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form II
分子名称: GUANOSINE-5'-DIPHOSPHATE, Iron(II) transport protein B
著者Hattori, M, Ishitani, R, Nureki, O.
登録日2009-04-22
公開日2009-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1V
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Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in apo form
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Hattori, M, Ishitani, R, Nureki, O.
登録日2009-04-22
公開日2009-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1U
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Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GMPPNP form
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, Iron(II) transport protein B, MAGNESIUM ION, ...
著者Hattori, M, Ishitani, R, Nureki, O.
登録日2009-04-22
公開日2009-09-22
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3A1S
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Crystal structue of the cytosolic domain of T. maritima FeoB iron iransporter in GDP form I
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, GUANOSINE-5'-DIPHOSPHATE, ...
著者Hattori, M, Ishitani, R, Nureki, O.
登録日2009-04-22
公開日2009-09-22
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis of novel interactions between the small-GTPase and GDI-like domains in prokaryotic FeoB iron transporter
Structure, 17, 2009
3AGK
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Crystal structure of archaeal translation termination factor, aRF1
分子名称: Peptide chain release factor subunit 1
著者Kobayashi, K, Kikuno, I, Ishitani, R, Ito, K, Nureki, O.
登録日2010-04-01
公開日2010-11-03
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Omnipotent role of archaeal elongation factor 1 alpha (EF1{alpha}) in translational elongation and termination, and quality control of protein synthesis
Proc.Natl.Acad.Sci.USA, 107, 2010

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