1L9H
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![BU of 1l9h by Molmil](/molmil-images/mine/1l9h) | Crystal structure of bovine rhodopsin at 2.6 angstroms RESOLUTION | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ... | 著者 | Okada, T, Fujiyoshi, Y, Silow, M, Navarro, J, Landau, E.M, Shichida, Y. | 登録日 | 2002-03-23 | 公開日 | 2002-05-15 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Functional role of internal water molecules in rhodopsin revealed by X-ray crystallography. Proc.Natl.Acad.Sci.USA, 99, 2002
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3A9I
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![BU of 3a9i by Molmil](/molmil-images/mine/3a9i) | Crystal structure of homocitrate synthase from Thermus thermophilus complexed with Lys | 分子名称: | COBALT (II) ION, Homocitrate synthase, LYSINE | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2009-10-28 | 公開日 | 2009-12-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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7YRO
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![BU of 7yro by Molmil](/molmil-images/mine/7yro) | Crystal structure of mango fucosyltransferase 13 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, Fucosyltransferase, ... | 著者 | Okada, T, Teramoto, T, Ihara, H, Ikeda, Y, Kakuta, Y. | 登録日 | 2022-08-10 | 公開日 | 2023-08-16 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.42 Å) | 主引用文献 | Crystal structure of mango alpha 1,3/ alpha 1,4-fucosyltransferase elucidates unique elements that regulate Lewis A-dominant oligosaccharide assembly. Glycobiology, 34, 2024
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2E0Y
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2ZTK
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![BU of 2ztk by Molmil](/molmil-images/mine/2ztk) | Crystal structure of homocitrate synthase from Thermus thermophilus complexed with homocitrate | 分子名称: | 3-HYDROXY-3-CARBOXY-ADIPIC ACID, COPPER (II) ION, Homocitrate synthase | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2008-10-06 | 公開日 | 2009-10-13 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (1.96 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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2ZTJ
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![BU of 2ztj by Molmil](/molmil-images/mine/2ztj) | Crystal structure of homocitrate synthase from Thermus thermophilus complexed with alpha-ketoglutarate | 分子名称: | 2-OXOGLUTARIC ACID, COPPER (II) ION, Homocitrate synthase | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2008-10-06 | 公開日 | 2009-10-13 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus J.Biol.Chem., 285, 2010
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2ZYF
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![BU of 2zyf by Molmil](/molmil-images/mine/2zyf) | Crystal structure of homocitrate synthase from Thermus thermophilus complexed with magnesuim ion and alpha-ketoglutarate | 分子名称: | 2-OXOGLUTARIC ACID, Homocitrate synthase, MAGNESIUM ION | 著者 | Okada, T, Tomita, T, Kuzuyama, T, Nishiyama, M. | 登録日 | 2009-01-20 | 公開日 | 2009-12-22 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from thermus thermophilus J.Biol.Chem., 2009
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2E0X
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2E0W
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1U19
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![BU of 1u19 by Molmil](/molmil-images/mine/1u19) | Crystal Structure of Bovine Rhodopsin at 2.2 Angstroms Resolution | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ... | 著者 | Okada, T, Sugihara, M, Bondar, A.N, Elstner, M, Entel, P, Buss, V. | 登録日 | 2004-07-15 | 公開日 | 2004-10-12 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The retinal conformation and its environment in rhodopsin in light of a new 2.2 A crystal structure J.Mol.Biol., 342, 2004
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2DBW
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![BU of 2dbw by Molmil](/molmil-images/mine/2dbw) | Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Acyl-Enzyme Intermediate | 分子名称: | GAMMA-L-GLUTAMIC ACID, GLYCEROL, Gamma-glutamyltranspeptidase | 著者 | Okada, T, Wada, K, Fukuyama, K. | 登録日 | 2005-12-16 | 公開日 | 2006-04-18 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate Proc.Natl.Acad.Sci.USA, 103, 2006
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2DBX
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![BU of 2dbx by Molmil](/molmil-images/mine/2dbx) | Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli Complexed with L-Glutamate | 分子名称: | CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ... | 著者 | Okada, T, Wada, K, Fukuyama, K. | 登録日 | 2005-12-16 | 公開日 | 2006-04-18 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate. Proc.Natl.Acad.Sci.Usa, 103, 2006
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2DBU
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2DG5
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![BU of 2dg5 by Molmil](/molmil-images/mine/2dg5) | Crystal Structure of Gamma-glutamyl transpeptidase from Escherichia coli in complex with hydrolyzed Glutathione | 分子名称: | CALCIUM ION, GLUTAMIC ACID, GLYCEROL, ... | 著者 | Okada, T, Wada, K, Fukuyama, K. | 登録日 | 2006-03-08 | 公開日 | 2006-04-18 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate. Proc.Natl.Acad.Sci.Usa, 103, 2006
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1F88
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![BU of 1f88 by Molmil](/molmil-images/mine/1f88) | CRYSTAL STRUCTURE OF BOVINE RHODOPSIN | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RETINAL, ... | 著者 | Okada, T, Palczewski, K, Stenkamp, R.E, Miyano, M. | 登録日 | 2000-06-29 | 公開日 | 2000-08-04 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Crystal structure of rhodopsin: A G protein-coupled receptor. Science, 289, 2000
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3OAX
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![BU of 3oax by Molmil](/molmil-images/mine/3oax) | Crystal structure of bovine rhodopsin with beta-ionone | 分子名称: | (3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one, (4E,6E)-hexadeca-1,4,6-triene, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... | 著者 | Makino, C.L, Riley, C.K, Looney, J, Crouch, R.K, Okada, T. | 登録日 | 2010-08-05 | 公開日 | 2011-01-19 | 最終更新日 | 2023-11-01 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Binding of more than one retinoid to visual opsins Biophys.J., 99, 2010
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7VCG
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1BM1
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![BU of 1bm1 by Molmil](/molmil-images/mine/1bm1) | CRYSTAL STRUCTURE OF BACTERIORHODOPSIN IN THE LIGHT-ADAPTED STATE | 分子名称: | BACTERIORHODOPSIN, PHOSPHORIC ACID 2,3-BIS-(3,7,11,15-TETRAMETHYL-HEXADECYLOXY)-PROPYL ESTER 2-HYDROXO-3-PHOSPHONOOXY-PROPYL ESTER, RETINAL | 著者 | Sato, H, Takeda, K, Tani, K, Hino, T, Okada, T, Nakasako, M, Kamiya, N, Kouyama, T. | 登録日 | 1998-07-28 | 公開日 | 1999-04-27 | 最終更新日 | 2023-08-02 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | Specific lipid-protein interactions in a novel honeycomb lattice structure of bacteriorhodopsin. Acta Crystallogr.,Sect.D, 55, 1999
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2PED
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![BU of 2ped by Molmil](/molmil-images/mine/2ped) | Crystallographic model of 9-cis-rhodopsin | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, HEPTANE-1,2,3-TRIOL, MERCURY (II) ION, ... | 著者 | Nakamichi, H, Okada, T. | 登録日 | 2007-04-02 | 公開日 | 2007-10-30 | 最終更新日 | 2023-10-25 | 実験手法 | X-RAY DIFFRACTION (2.95 Å) | 主引用文献 | Photoisomerization mechanism of rhodopsin and 9-cis-rhodopsin revealed by x-ray crystallography Biophys.J., 92, 2007
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2NQO
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![BU of 2nqo by Molmil](/molmil-images/mine/2nqo) | Crystal Structure of Helicobacter pylori gamma-Glutamyltranspeptidase | 分子名称: | Gamma-glutamyltranspeptidase | 著者 | Boanca, G, Sand, A, Okada, T, Suzuki, H, Kumagai, H, Fukuyama, K, Barycki, J.J. | 登録日 | 2006-10-31 | 公開日 | 2006-11-21 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Autoprocessing of Helicobacter pylori gamma-glutamyltranspeptidase leads to the formation of a threonine-threonine catalytic dyad. J.Biol.Chem., 282, 2007
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1ED7
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![BU of 1ed7 by Molmil](/molmil-images/mine/1ed7) | SOLUTION STRUCTURE OF THE CHITIN-BINDING DOMAIN OF BACILLUS CIRCULANS WL-12 CHITINASE A1 | 分子名称: | CHITINASE A1 | 著者 | Ikegami, T, Okada, T, Hashimoto, M, Seino, S, Watanabe, T, Shirakawa, M. | 登録日 | 2000-01-27 | 公開日 | 2000-05-24 | 最終更新日 | 2024-05-22 | 実験手法 | SOLUTION NMR | 主引用文献 | Solution structure of the chitin-binding domain of Bacillus circulans WL-12 chitinase A1. J.Biol.Chem., 275, 2000
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6LT5
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![BU of 6lt5 by Molmil](/molmil-images/mine/6lt5) | Lysozyme protected by alginate gel | 分子名称: | CHLORIDE ION, GLYCEROL, Lysozyme C, ... | 著者 | Tomoike, F, Morita, S, Nagae, T, Okada, T. | 登録日 | 2020-01-21 | 公開日 | 2021-01-27 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.32 Å) | 主引用文献 | Post-crystallization protection of protein crystals To Be Published
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7WXS
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![BU of 7wxs by Molmil](/molmil-images/mine/7wxs) | Lysozyme protected by polyacrylamide gel | 分子名称: | CHLORIDE ION, GLYCEROL, Lysozyme C, ... | 著者 | Muroyama, H, Tomoike, F, Nagae, T, Okada, T. | 登録日 | 2022-02-15 | 公開日 | 2023-02-22 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (1.25 Å) | 主引用文献 | Post-crystallization protection of protein crystals by polyacrylamide To Be Published
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7WXT
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3UON
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![BU of 3uon by Molmil](/molmil-images/mine/3uon) | Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist | 分子名称: | (3R)-1-azabicyclo[2.2.2]oct-3-yl hydroxy(diphenyl)acetate, CHLORIDE ION, Human M2 muscarinic acetylcholine, ... | 著者 | Haga, K, Kruse, A.C, Asada, H, Yurugi-Kobayashi, T, Shiroishi, M, Zhang, C, Weis, W.I, Okada, T, Kobilka, B.K, Haga, T, Kobayashi, T. | 登録日 | 2011-11-16 | 公開日 | 2012-02-01 | 最終更新日 | 2023-09-13 | 実験手法 | X-RAY DIFFRACTION (3 Å) | 主引用文献 | Structure of the human M2 muscarinic acetylcholine receptor bound to an antagonist. Nature, 482, 2012
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