1VA3
 
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 3) | | 分子名称: | Transcription factor Sp1, ZINC ION | | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | 登録日 | 2004-02-07 | | 公開日 | 2005-02-08 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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1VA1
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 1) | | 分子名称: | Transcription factor Sp1, ZINC ION | | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | 登録日 | 2004-02-07 | | 公開日 | 2005-02-08 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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1VA2
 | | Solution Structure of Transcription Factor Sp1 DNA Binding Domain (Zinc Finger 2) | | 分子名称: | Transcription factor Sp1, ZINC ION | | 著者 | Oka, S, Shiraishi, Y, Yoshida, T, Ohkubo, T, Sugiura, Y, Kobayashi, Y. | | 登録日 | 2004-02-07 | | 公開日 | 2005-02-08 | | 最終更新日 | 2023-12-27 | | 実験手法 | SOLUTION NMR | | 主引用文献 | NMR structure of transcription factor Sp1 DNA binding domain
Biochemistry, 43, 2004
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1IZ1
 | | CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR | | 分子名称: | LysR-type regulatory protein | | 著者 | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | | 登録日 | 2002-09-18 | | 公開日 | 2003-05-06 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend
J.Mol.Biol., 328, 2003
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3PIR
 | | Crystal structure of M-RasD41E in complex with GppNHp (type 1) | | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | | 著者 | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | | 登録日 | 2010-11-07 | | 公開日 | 2011-03-09 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | | 主引用文献 | Crystal structure of M-RasD41E in complex with GppNHp (type 1)
To be Published
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3PIT
 | | Crystal structure of M-RasD41E in complex with GppNHp (type 2) | | 分子名称: | MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, Ras-related protein M-Ras | | 著者 | Muraoka, S, Matsumoto, K, Shima, F, Hu, L, Ijiri, Y, Hirai, R, Liao, J, Kataoka, T. | | 登録日 | 2010-11-08 | | 公開日 | 2011-03-09 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | | 主引用文献 | Crystal structure of M-RasD41E in complex with GppNHp (type 2)
To be Published
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1IXC
 | | Crystal structure of CbnR, a LysR family transcriptional regulator | | 分子名称: | LysR-type regulatory protein | | 著者 | Muraoka, S, Okumura, R, Ogawa, N, Miyashita, K, Senda, T. | | 登録日 | 2002-06-18 | | 公開日 | 2003-06-18 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Crystal Structure of a Full-length LysR-type Transcriptional Regulator, CbnR: Unusual Combination of Two Subunit Forms and Molecular Bases for Causing and Changing DNA Bend
J.Mol.Biol., 328, 2003
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8PXB
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4EFM
 | | Crystal structure of H-Ras G12V in complex with GppNHp (state 1) | | 分子名称: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | 著者 | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | 登録日 | 2012-03-30 | | 公開日 | 2012-05-16 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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4EFN
 | | Crystal structure of H-Ras Q61L in complex with GppNHp (state 1) | | 分子名称: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | 著者 | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | 登録日 | 2012-03-30 | | 公開日 | 2012-05-16 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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4EFL
 | | Crystal structure of H-Ras WT in complex with GppNHp (state 1) | | 分子名称: | GTPase HRas, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | | 著者 | Muraoka, S, Shima, F, Araki, M, Inoue, T, Yoshimoto, A, Ijiri, Y, Seki, N, Tamura, A, Kumasaka, T, Yamamoto, M, Kataoka, T. | | 登録日 | 2012-03-30 | | 公開日 | 2012-05-16 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Crystal structures of the state 1 conformations of the GTP-bound H-Ras protein and its oncogenic G12V and Q61L mutants
Febs Lett., 586, 2012
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8PVR
 | | Cryo-EM structure of horse Nhe9 bound to PI(3,5)P2 | | 分子名称: | (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Sodium/hydrogen exchanger 9 | | 著者 | Kokane, S, Meier, P, Gulati, A, Delemotte, L, Drew, D. | | 登録日 | 2023-07-18 | | 公開日 | 2024-07-24 | | 実験手法 | ELECTRON MICROSCOPY (3.06 Å) | | 主引用文献 | PIP2 mediated oligomerization of the endosomal sodium/proton exchanger NHE9
To Be Published
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1M54
 | | CYSTATHIONINE-BETA SYNTHASE: REDUCED VICINAL THIOLS | | 分子名称: | CYSTATHIONINE BETA-SYNTHASE, PROTOPORPHYRIN IX CONTAINING FE, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Taoka, S, Lepore, B.W, Kabil, O, Ojha, S, Ringe, D, Banerjee, R. | | 登録日 | 2002-07-08 | | 公開日 | 2002-08-14 | | 最終更新日 | 2021-10-27 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | HUMAN CYSTATHIONINE BETA-SYNTHASE IS A HEME SENSOR PROTEIN. EVIDENCE THAT THE
REDOX SENSOR IS HEME AND NOT THE VICINAL CYSTEINES IN THE CXXC MOTIF SEEN IN THE CRYSTAL STRUCTURE OF THE TRUNCATED ENZYME
BIOCHEMISTRY, 41, 2002
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1FEX
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6ESG
 | | Nucleosome breathing : Class 2 | | 分子名称: | DNA (141-MER), Histone H2A, Histone H2B 1.1, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2017-10-20 | | 公開日 | 2017-12-20 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (5.4 Å) | | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6ESH
 | | Nucleosome breathing : Class 3 | | 分子名称: | DNA (137-MER), Histone H2A, Histone H2B 1.1, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2017-10-20 | | 公開日 | 2017-12-20 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (5.1 Å) | | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6ESI
 | | Nucleosome breathing : Class 4 | | 分子名称: | DNA (133-MER), Histone H2A, Histone H2B 1.1, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2017-10-20 | | 公開日 | 2017-12-20 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (6.3 Å) | | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6FQ8
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6FQ6
 | | Class 2 : distorted nucleosome | | 分子名称: | DNA (147-MER), Histone H2A, Histone H2B, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2018-02-13 | | 公開日 | 2018-04-18 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (4 Å) | | 主引用文献 | Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
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6ESF
 | | Nucleosome : Class 1 | | 分子名称: | DNA (147-MER), Histone H2A, Histone H2B 1.1, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2017-10-20 | | 公開日 | 2017-12-20 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | | 主引用文献 | Histone octamer rearranges to adapt to DNA unwrapping.
Nat. Struct. Mol. Biol., 25, 2018
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6FQ5
 | | Class 1 : canonical nucleosome | | 分子名称: | DNA (147-MER), Histone H2A, Histone H2B, ... | | 著者 | Bilokapic, S, Halic, M. | | 登録日 | 2018-02-13 | | 公開日 | 2018-04-18 | | 最終更新日 | 2024-05-15 | | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | | 主引用文献 | Structural rearrangements of the histone octamer translocate DNA.
Nat Commun, 9, 2018
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3DXW
 | | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae complexed with epsilon caprolactam | | 分子名称: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE, azepan-2-one | | 著者 | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | | 登録日 | 2008-07-25 | | 公開日 | 2009-07-28 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.41 Å) | | 主引用文献 | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
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3DXV
 | | The crystal structure of alpha-amino-epsilon-caprolactam racemase from Achromobacter obae | | 分子名称: | Alpha-amino-epsilon-caprolactam racemase, PYRIDOXAL-5'-PHOSPHATE | | 著者 | Okazaki, S, Suzuki, A, Komeda, H, Asano, Y, Yamane, T. | | 登録日 | 2008-07-25 | | 公開日 | 2009-02-17 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | | 主引用文献 | The novel structure of a pyridoxal 5'-phosphate-dependent fold-type I racemase, alpha-amino-epsilon-caprolactam racemase from Achromobacter obae
Biochemistry, 48, 2009
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6KT1
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2L8D
 | | Structure/function of the LBR Tudor domain | | 分子名称: | Lamin-B receptor | | 著者 | Liokatis, S, Edlich, C, Soupsana, K, Giannios, I, Sattler, M, Georgatos, S.D, Politou, A.S. | | 登録日 | 2011-01-10 | | 公開日 | 2011-11-09 | | 最終更新日 | 2024-05-15 | | 実験手法 | SOLUTION NMR | | 主引用文献 | Solution structure and molecular interactions of lamin B receptor tudor domain.
J.Biol.Chem., 287, 2012
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