7DOD
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![BU of 7dod by Molmil](/molmil-images/mine/7dod) | Capsid structure of human sapovirus | 分子名称: | Calicivirin | 著者 | Miyazaki, N, Murakami, K, Oka, T, Iwasaki, K, Katayama, K, Murata, K. | 登録日 | 2020-12-14 | 公開日 | 2021-12-15 | 最終更新日 | 2024-06-05 | 実験手法 | ELECTRON MICROSCOPY (2.9 Å) | 主引用文献 | Atomic structure of human sapovirus capsid by single particle cryo-electron microscopy To Be Published
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2ZZQ
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![BU of 2zzq by Molmil](/molmil-images/mine/2zzq) | Crystal structure analysis of the HEV capsid protein, PORF2 | 分子名称: | Protein ORF3, Capsid protein | 著者 | Miyazaki, N, Xing, L, Wang, C.-Y, Li, T.-C, Takeda, N, Higashiura, A, Nakagawa, A, Tsukihara, T, Miyamura, T, Cheng, R.H. | 登録日 | 2009-02-23 | 公開日 | 2010-03-09 | 最終更新日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (3.81 Å) | 主引用文献 | Role of protein domain-modularity in designating capsid assembly and antigenicity To be Published
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6RVV
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![BU of 6rvv by Molmil](/molmil-images/mine/6rvv) | Structure of left-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges. | 分子名称: | GOLD ION, Transcription attenuation protein MtrB | 著者 | Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G. | 登録日 | 2019-06-03 | 公開日 | 2019-06-12 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | An ultra-stable gold-coordinated protein cage displaying reversible assembly. Nature, 569, 2019
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6RVW
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![BU of 6rvw by Molmil](/molmil-images/mine/6rvw) | Structure of right-handed protein cage consisting of 24 eleven-membered ring proteins held together by gold (I) bridges. | 分子名称: | GOLD ION, Transcription attenuation protein MtrB | 著者 | Malay, A.D, Miyazaki, N, Biela, A.P, Iwasaki, K, Heddle, J.G. | 登録日 | 2019-06-03 | 公開日 | 2019-06-12 | 最終更新日 | 2024-05-15 | 実験手法 | ELECTRON MICROSCOPY (3.7 Å) | 主引用文献 | An ultra-stable gold-coordinated protein cage displaying reversible assembly. Nature, 569, 2019
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6S2C
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![BU of 6s2c by Molmil](/molmil-images/mine/6s2c) | Acquired functional capsid structures in metazoan totivirus-like dsRNA virus. | 分子名称: | Capsid protein | 著者 | Okamoto, K, Larsson, S.D.D, Maia, R.N.C.F, Murata, K, Hajdu, J, Iwasaki, K, Miyazaki, N. | 登録日 | 2019-06-20 | 公開日 | 2020-04-29 | 最終更新日 | 2024-05-22 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Acquired Functional Capsid Structures in Metazoan Totivirus-like dsRNA Virus. Structure, 28, 2020
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8B59
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![BU of 8b59 by Molmil](/molmil-images/mine/8b59) | |
8B4Z
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![BU of 8b4z by Molmil](/molmil-images/mine/8b4z) | |
7DR2
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![BU of 7dr2 by Molmil](/molmil-images/mine/7dr2) | Structure of GraFix PSI tetramer from Cyanophora paradoxa | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2020-12-25 | 公開日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022
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7DR1
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![BU of 7dr1 by Molmil](/molmil-images/mine/7dr1) | Structure of Wild-type PSI monomer2 from Cyanophora paradoxa | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2020-12-25 | 公開日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | 主引用文献 | Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022
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7DR0
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![BU of 7dr0 by Molmil](/molmil-images/mine/7dr0) | Structure of Wild-type PSI monomer1 from Cyanophora paradoxa | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Akita, F, Miyazaki, N, Shen, J.R. | 登録日 | 2020-12-25 | 公開日 | 2022-02-16 | 実験手法 | ELECTRON MICROSCOPY (3.3 Å) | 主引用文献 | Structural insights into an evolutionary turning-point of photosystem I from prokaryotes to eukaryotes Biorxiv, 2022
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6AB6
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![BU of 6ab6 by Molmil](/molmil-images/mine/6ab6) | Cryo-EM structure of T=3 Penaeus vannamei nodavirus | 分子名称: | CALCIUM ION, Capsid protein | 著者 | Chen, N.C, Miyazaki, N, Yoshimura, M, Guan, H.H, Lin, C.C, Iwasaki, K, Chen, C.J. | 登録日 | 2018-07-20 | 公開日 | 2019-03-20 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | 主引用文献 | The atomic structures of shrimp nodaviruses reveal new dimeric spike structures and particle polymorphism. Commun Biol, 2, 2019
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6LXV
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![BU of 6lxv by Molmil](/molmil-images/mine/6lxv) | Cryo-EM structure of phosphoketolase from Bifidobacterium longum | 分子名称: | CALCIUM ION, Phosphoketolase, THIAMINE DIPHOSPHATE | 著者 | Nakata, K, Miyazaki, N, Yamaguchi, H, Hirose, M, Miyano, H, Mizukoshi, T, Kashiwagi, T, Iwasaki, K. | 登録日 | 2020-02-12 | 公開日 | 2021-02-17 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.1 Å) | 主引用文献 | High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis. J.Struct.Biol., 214, 2022
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7D1T
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![BU of 7d1t by Molmil](/molmil-images/mine/7d1t) | Cryo-EM Structure of PSII at 1.95 angstrom resolution | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R. | 登録日 | 2020-09-15 | 公開日 | 2021-03-31 | 最終更新日 | 2021-04-07 | 実験手法 | ELECTRON MICROSCOPY (1.95 Å) | 主引用文献 | High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams. Commun Biol, 4, 2021
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7D1U
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![BU of 7d1u by Molmil](/molmil-images/mine/7d1u) | Cryo-EM Structure of PSII at 2.08 angstrom resolution | 分子名称: | (3R)-beta,beta-caroten-3-ol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Kato, K, Miyazaki, N, Hamaguchi, T, Nakajima, Y, Akita, F, Yonekura, K, Shen, J.R. | 登録日 | 2020-09-15 | 公開日 | 2021-03-31 | 最終更新日 | 2021-04-07 | 実験手法 | ELECTRON MICROSCOPY (2.08 Å) | 主引用文献 | High-resolution cryo-EM structure of photosystem II reveals damage from high-dose electron beams. Commun Biol, 4, 2021
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7DOU
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![BU of 7dou by Molmil](/molmil-images/mine/7dou) | Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40 | 分子名称: | Cement protein gp16 | 著者 | Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2020-12-17 | 公開日 | 2021-10-27 | 最終更新日 | 2024-06-05 | 実験手法 | ELECTRON MICROSCOPY (3 Å) | 主引用文献 | Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy. Structure, 30, 2022
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7DN2
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![BU of 7dn2 by Molmil](/molmil-images/mine/7dn2) | Acidic stable capsid structure of Helicobacter pylori bacteriophage KHP30 | 分子名称: | Cement protein gp15, Major structural protein ORF14 | 著者 | Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N. | 登録日 | 2020-12-08 | 公開日 | 2021-10-27 | 最終更新日 | 2024-05-29 | 実験手法 | ELECTRON MICROSCOPY (2.7 Å) | 主引用文献 | Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy. Structure, 30, 2022
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3VKF
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![BU of 3vkf by Molmil](/molmil-images/mine/3vkf) | Crystal Structure of Neurexin 1beta/Neuroligin 1 complex | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Neurexin-1-beta, ... | 著者 | Tanaka, H, Miyazaki, N, Nogi, T, Iwasaki, K, Takagi, J. | 登録日 | 2011-11-15 | 公開日 | 2012-08-01 | 最終更新日 | 2020-07-29 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Higher-order architecture of cell adhesion mediated by polymorphic synaptic adhesion molecules neurexin and neuroligin. Cell Rep, 2, 2012
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7CEC
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![BU of 7cec by Molmil](/molmil-images/mine/7cec) | Structure of alpha6beta1 integrin in complex with laminin-511 | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | 著者 | Arimori, T, Miyazaki, N, Takagi, J. | 登録日 | 2020-06-22 | 公開日 | 2021-06-23 | 最終更新日 | 2021-07-14 | 実験手法 | ELECTRON MICROSCOPY (3.9 Å) | 主引用文献 | Structural mechanism of laminin recognition by integrin. Nat Commun, 12, 2021
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1UF2
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![BU of 1uf2 by Molmil](/molmil-images/mine/1uf2) | The Atomic Structure of Rice dwarf Virus (RDV) | 分子名称: | Core protein P3, Outer capsid protein P8, Structural protein P7 | 著者 | Nakagawa, A, Miyazaki, N, Taka, J, Naitow, H, Ogawa, A, Fujimoto, Z, Mizuno, H, Higashi, T, Watanabe, Y, Omura, T, Cheng, R.H, Tsukihara, T. | 登録日 | 2003-05-23 | 公開日 | 2003-10-14 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | 主引用文献 | The atomic structure of rice dwarf virus reveals the self-assembly mechanism of component proteins. Structure, 11, 2003
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6J3Z
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![BU of 6j3z by Molmil](/molmil-images/mine/6j3z) | Structure of C2S1M1-type PSII-FCPII supercomplex from diatom | 分子名称: | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-01-07 | 公開日 | 2019-08-07 | 最終更新日 | 2019-11-06 | 実験手法 | ELECTRON MICROSCOPY (3.6 Å) | 主引用文献 | Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex. Nat.Plants, 5, 2019
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6J3Y
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![BU of 6j3y by Molmil](/molmil-images/mine/6j3y) | Structure of C2S2-type PSII-FCPII supercomplex from diatom | 分子名称: | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-01-07 | 公開日 | 2019-08-07 | 最終更新日 | 2019-11-06 | 実験手法 | ELECTRON MICROSCOPY (3.3 Å) | 主引用文献 | Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex. Nat.Plants, 5, 2019
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6J40
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![BU of 6j40 by Molmil](/molmil-images/mine/6j40) | Structure of C2S2M2-type PSII-FCPII supercomplex from diatom | 分子名称: | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ... | 著者 | Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-01-07 | 公開日 | 2019-08-07 | 最終更新日 | 2019-11-06 | 実験手法 | ELECTRON MICROSCOPY (3.8 Å) | 主引用文献 | Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex. Nat.Plants, 5, 2019
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6KMX
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![BU of 6kmx by Molmil](/molmil-images/mine/6kmx) | Structure of PSI from H. hongdechloris grown under far-red light condition | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-08-01 | 公開日 | 2020-01-15 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (2.41 Å) | 主引用文献 | Structural basis for the adaptation and function of chlorophyll f in photosystem I. Nat Commun, 11, 2020
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6KMW
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![BU of 6kmw by Molmil](/molmil-images/mine/6kmw) | Structure of PSI from H. hongdechloris grown under white light condition | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Kato, K, Nagao, R, Shen, J.R, Miyazaki, N, Akita, F. | 登録日 | 2019-08-01 | 公開日 | 2020-01-15 | 最終更新日 | 2024-03-27 | 実験手法 | ELECTRON MICROSCOPY (2.35 Å) | 主引用文献 | Structural basis for the adaptation and function of chlorophyll f in photosystem I. Nat Commun, 11, 2020
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6K33
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![BU of 6k33 by Molmil](/molmil-images/mine/6k33) | Structure of PSI-isiA supercomplex from Thermosynechococcus vulcanus | 分子名称: | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ... | 著者 | Akita, F, Nagao, R, Kato, K, Shen, J.R, Miyazaki, N. | 登録日 | 2019-05-16 | 公開日 | 2020-05-20 | 最終更新日 | 2020-05-27 | 実験手法 | ELECTRON MICROSCOPY (2.74 Å) | 主引用文献 | Structure of a cyanobacterial photosystem I surrounded by octadecameric IsiA antenna proteins. Commun Biol, 3, 2020
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