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5JHC
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BU of 5jhc by Molmil
Crystal structure of the self-assembled propeptides from Ape1
分子名称: Vacuolar aminopeptidase 1
著者Yamasaki, A, Noda, N.N.
登録日2016-04-20
公開日2016-06-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.4 Å)
主引用文献Structural Basis for Receptor-Mediated Selective Autophagy of Aminopeptidase I Aggregates
Cell Rep, 16, 2016
1IPF
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BU of 1ipf by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH AND TROPINONE
分子名称: 8-METHYL-8-AZABICYCLO[3,2,1]OCTAN-3-ONE, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1IPE
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BU of 1ipe by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADPH
分子名称: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, TROPINONE REDUCTASE-II
著者Yamashita, A, Endo, M, Higashi, T, Nakatsu, T, Yamada, Y, Oda, J, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2001-05-09
公開日2003-06-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Capturing Enzyme Structure Prior to Reaction Initiation: Tropinone Reductase-II-Substrate Complexes
BIOCHEMISTRY, 42, 2003
1KUW
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BU of 1kuw by Molmil
High-Resolution Structure and Localization of Amylin Nucleation Site in Detergent Micelles
分子名称: Islet amyloid polypeptide
著者Mascioni, A, Porcelli, F, Ilangovan, U, Ramamoorthy, A, Veglia, G.
登録日2002-01-22
公開日2003-09-02
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Conformational preferences of the amylin nucleation site in SDS micelles: an NMR study.
Biopolymers, 69, 2003
4IHG
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BU of 4ihg by Molmil
Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production
分子名称: 3-HYDROXY-TETRADECANOIC ACID, 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, ...
著者Masoudi, A, Raetz, C.R.H, Pemble, C.W.
登録日2012-12-18
公開日2013-11-13
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.89 Å)
主引用文献Chasing acyl carrier protein through a catalytic cycle of lipid A production.
Nature, 505, 2014
4IHH
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BU of 4ihh by Molmil
Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 4'-PHOSPHOPANTETHEINE, Acyl carrier protein, ...
著者Masoudi, A, Raetz, C.R.H, Pemble, C.W.
登録日2012-12-18
公開日2013-11-13
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.132 Å)
主引用文献Chasing acyl carrier protein through a catalytic cycle of lipid A production.
Nature, 505, 2014
4IHF
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BU of 4ihf by Molmil
Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production
分子名称: Acyl carrier protein, CHLORIDE ION, S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (3R)-3-hydroxytetradecanethioate, ...
著者Masoudi, A, Raetz, C.R.H, Pemble, C.W.
登録日2012-12-18
公開日2013-11-13
最終更新日2017-11-15
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Chasing acyl carrier protein through a catalytic cycle of lipid A production.
Nature, 505, 2014
1IZN
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BU of 1izn by Molmil
Crystal Structure of Actin Filament Capping Protein CapZ
分子名称: CapZ alpha-1 subunit, CapZ beta-1 subunit, NITRATE ION
著者Yamashita, A, Maeda, K, Maeda, Y.
登録日2002-10-10
公開日2003-04-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of CapZ: structural basis for actin filament barbed end capping
EMBO J., 22, 2003
2KDY
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BU of 2kdy by Molmil
NMR structure of LP2086-B01
分子名称: Factor H binding protein variant B01_001
著者Mascioni, A, Bentley, B.E, Camarda, R, Dilts, D.A, Fink, P, Gusarova, V, Hoiseth, S, Jacob, J, Lin, S.L, Malakian, K, McNeil, L.K, Mininni, T, Moy, F, Murphy, E, Novikova, E, Sigethy, S, Wen, Y, Zlotnick, G.W, Tsao, D.H.H.
登録日2009-01-20
公開日2009-02-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structural Basis for the Immunogenic Properties of the Meningococcal Vaccine Candidate LP2086.
J.Biol.Chem., 284, 2009
2AE2
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BU of 2ae2 by Molmil
TROPINONE REDUCTASE-II COMPLEXED WITH NADP+ AND PSEUDOTROPINE
分子名称: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, PROTEIN (TROPINONE REDUCTASE-II), PSEUDOTROPINE
著者Yamashita, A, Kato, H, Wakatsuki, S, Tomizaki, T, Nakatsu, T, Nakajima, K, Hashimoto, T, Yamada, Y, Oda, J.
登録日1999-01-26
公開日1999-02-02
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of tropinone reductase-II complexed with NADP+ and pseudotropine at 1.9 A resolution: implication for stereospecific substrate binding and catalysis.
Biochemistry, 38, 1999
2A65
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BU of 2a65 by Molmil
Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
分子名称: CHLORIDE ION, LEUCINE, Na(+):neurotransmitter symporter (Snf family), ...
著者Yamashita, A, Singh, S.K, Kawate, T, Jin, Y, Gouaux, E.
登録日2005-07-01
公開日2005-08-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of a bacterial homologue of Na(+)/Cl(-)-dependent neurotransmitter transporters.
Nature, 437, 2005
7YO8
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BU of 7yo8 by Molmil
Crystal structure of fission yeast Hfl1 LIR fused to human GABARAPL2
分子名称: Transmembrane protein 184 homolog C30D11.06c,Gamma-aminobutyric acid receptor-associated protein-like 2
著者Yamasaki, A, Noda, N.N.
登録日2022-08-01
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.805 Å)
主引用文献Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7YO9
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BU of 7yo9 by Molmil
Crystal structure of fusion protein of human TP53INP2 LIR and human GABARAP
分子名称: ISOPROPYL ALCOHOL, PHOSPHATE ION, Tumor protein p53-inducible nuclear protein 2,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2022-08-01
公開日2022-11-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Development of new tools to study membrane-anchored mammalian Atg8 proteins.
Autophagy, 19, 2023
7VED
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BU of 7ved by Molmil
Crystal structure of GABARAP fused to TEX264 LIR with S272D mutation
分子名称: SULFATE ION, Testis-expressed protein 264,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2021-09-08
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
7BRN
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BU of 7brn by Molmil
Crystal structure of Atg40 AIM fused to Atg8
分子名称: 1,2-ETHANEDIOL, Autophagy-related protein 40,Autophagy-related protein 8, L-EPINEPHRINE
著者Yamasaki, A, Noda, N.N.
登録日2020-03-29
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.231 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRQ
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BU of 7brq by Molmil
Crystal structure of human FAM134B LIR fused to human GABARAP
分子名称: GLYCEROL, Reticulophagy regulator 1,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-29
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.404 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRT
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BU of 7brt by Molmil
Crystal structure of Sec62 LIR fused to GABARAP
分子名称: Translocation protein SEC62,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-30
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.999 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
7BRU
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BU of 7bru by Molmil
Crystal structure of human RTN3 LIR fused to human GABARAP
分子名称: PHOSPHATE ION, Reticulon-3,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2020-03-30
公開日2020-07-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.149 Å)
主引用文献Super-assembly of ER-phagy receptor Atg40 induces local ER remodeling at contacts with forming autophagosomal membranes.
Nat Commun, 11, 2020
6AAG
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BU of 6aag by Molmil
Crystal structure of budding yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Transmembrane protein 184 homolog YKR051W,Autophagy-related protein 8
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.445 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6AAF
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BU of 6aaf by Molmil
Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Autophagy-related protein 8, Transmembrane protein 184 homolog C30D11.06c
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.197 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
1JDM
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BU of 1jdm by Molmil
NMR Structure of Sarcolipin
分子名称: Sarcolipin
著者Veglia, G, Mascioni, A.
登録日2001-06-14
公開日2002-02-13
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Structure and orientation of sarcolipin in lipid environments.
Biochemistry, 41, 2002
8B51
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BU of 8b51 by Molmil
Usutu virus methyltransferase domain in complex with sinefungin
分子名称: GLYCEROL, GLYCINE, RNA-directed RNA polymerase NS5, ...
著者Ferrero, D.S, Albentosa Gonzalez, L, Mas, A, Verdaguer, N.
登録日2022-09-21
公開日2023-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structure and function of the NS5 methyltransferase domain from Usutu virus.
Antiviral Res., 208, 2022
8B52
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BU of 8b52 by Molmil
Usutu virus methyltransferase domain in complex with sinefungin
分子名称: GLYCEROL, Genome polyprotein, S-ADENOSYL-L-HOMOCYSTEINE, ...
著者Ferrero, D.S, Albentosa Gonzalez, L, Mas, A, Verdaguer, N.
登録日2022-09-21
公開日2023-10-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.22 Å)
主引用文献Structure and function of the NS5 methyltransferase domain from Usutu virus.
Antiviral Res., 208, 2022
5X2M
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BU of 5x2m by Molmil
Crystal structure of the medaka fish taste receptor T1r2a-T1r3 ligand binding domains in complex with L-glutamine
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
著者Nuemket, N, Yasui, N, Atsumi, N, Yamashita, A.
登録日2017-02-02
公開日2017-05-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.206 Å)
主引用文献Structural basis for perception of diverse chemical substances by T1r taste receptors
Nat Commun, 8, 2017
2QEI
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BU of 2qei by Molmil
Crystal structure analysis of LeuT complexed with L-alanine, sodium, and clomipramine
分子名称: 3-(3-CHLORO-5H-DIBENZO[B,F]AZEPIN-5-YL)-N,N-DIMETHYLPROPAN-1-AMINE, ALANINE, SODIUM ION, ...
著者Singh, S.K, Yamashita, A, Gouaux, E.
登録日2007-06-25
公開日2007-08-21
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Antidepressant binding site in a bacterial homologue of neurotransmitter transporters.
Nature, 448, 2007

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