6LHN
 
 | | RLGSGG-AtPRT6 UBR box | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2019-12-09 | | 公開日 | 2020-01-22 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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5YSK
 | | SdeA mART-C domain EE/AA apo | | 分子名称: | Ubiquitinating/deubiquitinating enzyme SdeA | | 著者 | Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2017-11-14 | | 公開日 | 2018-08-29 | | 実験手法 | X-RAY DIFFRACTION (2.403 Å) | | 主引用文献 | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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5YSI
 | | SdeA mART-C domain EE/AA NCA complex | | 分子名称: | NICOTINAMIDE, Ubiquitinating/deubiquitinating enzyme SdeA | | 著者 | Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2017-11-14 | | 公開日 | 2018-08-29 | | 実験手法 | X-RAY DIFFRACTION (1.546 Å) | | 主引用文献 | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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5YSJ
 | | SdeA mART-C domain WT apo | | 分子名称: | Ubiquitinating/deubiquitinating enzyme SdeA | | 著者 | Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2017-11-14 | | 公開日 | 2018-08-29 | | 最終更新日 | 2024-03-27 | | 実験手法 | X-RAY DIFFRACTION (2.059 Å) | | 主引用文献 | Structural and Biochemical Study of the Mono-ADP-Ribosyltransferase Domain of SdeA, a Ubiquitylating/Deubiquitylating Enzyme from Legionella pneumophila
J. Mol. Biol., 430, 2018
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7FER
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 4.2 | | 分子名称: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | 著者 | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-07-06 | | 最終更新日 | 2022-07-20 | | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FEP
 | | Cryo-EM structure of BsClpP-ADEP1 complex at pH 6.5 | | 分子名称: | ADEP1, ATP-dependent Clp protease proteolytic subunit | | 著者 | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-07-06 | | 最終更新日 | 2022-07-20 | | 実験手法 | ELECTRON MICROSCOPY (3.1 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FES
 | | Cryo-EM structure of apo BsClpP at pH 4.2 | | 分子名称: | ATP-dependent Clp protease proteolytic subunit | | 著者 | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-07-06 | | 最終更新日 | 2024-06-12 | | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7FEQ
 | | Cryo-EM structure of apo BsClpP at pH 6.5 | | 分子名称: | ATP-dependent Clp protease proteolytic subunit | | 著者 | Kim, L, Lee, B.-G, Kim, M.K, Kwon, D.H, Kim, H, Brotz-Oesterhelt, H, Roh, S.-H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-07-06 | | 最終更新日 | 2024-06-12 | | 実験手法 | ELECTRON MICROSCOPY (3.2 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7Y6Y
 | | RLGSGG-AtPRT6 UBR box (C121) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-06-21 | | 公開日 | 2023-07-05 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.543 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7Y70
 | | RLGSGG-AtPRT6 UBR box (P4332) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-06-21 | | 公開日 | 2023-07-05 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.801 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7Y6W
 | | RRGSGG-AtPRT6 UBR box (I222) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-06-21 | | 公開日 | 2023-07-05 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.95 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7Y6X
 | | RRGSGG-AtPRT6 UBR box (P32) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-06-21 | | 公開日 | 2023-07-05 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.196 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7Y6Z
 | | RLGSGG-AtPRT6 UBR box (I222) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-06-21 | | 公開日 | 2023-07-05 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.598 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7XWD
 | | Apo-AtPRT6 UBR box | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-05-26 | | 公開日 | 2023-05-31 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.396 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7XWF
 | | RLGSGG-AtPRT6 UBR box (highest resolution) | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-05-26 | | 公開日 | 2023-05-31 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.451 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7XWG
 | | RSGSGG-AtPRT6 UBR box | | 分子名称: | E3 ubiquitin-protein ligase PRT6, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-05-26 | | 公開日 | 2023-05-31 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.832 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7XWE
 | | RRGSGG-AtPRT6 UBR box | | 分子名称: | E3 ubiquitin-protein ligase PRT6, MAGNESIUM ION, ZINC ION | | 著者 | Kim, L, Song, H.K. | | 登録日 | 2022-05-26 | | 公開日 | 2023-05-31 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (1.598 Å) | | 主引用文献 | Structural analyses of plant PRT6-UBR box for Cys-Arg/N-degron pathway and insights into the plant submergence resistance
To Be Published
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7P80
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compressed state) | | 分子名称: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | 著者 | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-06-29 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.98 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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7P81
 | | Crystal structure of ClpP from Bacillus subtilis in complex with ADEP2 (compact state) | | 分子名称: | ADEP2, ATP-dependent Clp protease proteolytic subunit | | 著者 | Lee, B.-G, Kim, L, Kim, M.K, Kwon, D.H, Song, H.K. | | 登録日 | 2021-07-21 | | 公開日 | 2022-06-29 | | 最終更新日 | 2024-01-31 | | 実験手法 | X-RAY DIFFRACTION (2.79 Å) | | 主引用文献 | Structural insights into ClpP protease side exit pore-opening by a pH drop coupled with substrate hydrolysis.
Embo J., 41, 2022
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6KHZ
 | | p62/SQSTM1 ZZ domain with Gly-peptide | | 分子名称: | Sequestosome-1, ZINC ION | | 著者 | Kwon, D.H, Kim, L, Song, H.K. | | 登録日 | 2019-07-16 | | 公開日 | 2020-01-22 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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6KGI
 | | RLGS-yUbr1 Ubr box | | 分子名称: | E3 ubiquitin-protein ligase UBR1, ZINC ION | | 著者 | Heo, J, Kwon, D.H, Kim, L, Song, H.K. | | 登録日 | 2019-07-11 | | 公開日 | 2020-01-22 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.04 Å) | | 主引用文献 | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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6KGJ
 | | M1Q-hNTAQ1 C28S | | 分子名称: | Protein N-terminal glutamine amidohydrolase | | 著者 | Park, M.R, Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2019-07-11 | | 公開日 | 2020-01-22 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Use of the LC3B-fusion technique for biochemical and structural studies of proteins involved in the N-degron pathway.
J.Biol.Chem., 295, 2020
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7D34
 | | AtClpS1-peptide complex | | 分子名称: | ACETIC ACID, ALANINE, ATP-dependent Clp protease adapter protein CLPS1, ... | | 著者 | Heo, J, Kim, L, Kwon, D.H, Song, H.K. | | 登録日 | 2020-09-18 | | 公開日 | 2021-04-28 | | 最終更新日 | 2023-11-29 | | 実験手法 | X-RAY DIFFRACTION (2.007 Å) | | 主引用文献 | Structural basis for the N-degron specificity of ClpS1 from Arabidopsis thaliana.
Protein Sci., 30, 2021
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5IZV
 | | Crystal structure of the legionella pneumophila effector protein RavZ - F222 | | 分子名称: | Uncharacterized protein RavZ | | 著者 | Kwon, D.H, Kim, L, Kim, B.-W, Hong, S.B, Song, H.K. | | 登録日 | 2016-03-26 | | 公開日 | 2016-11-09 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.814 Å) | | 主引用文献 | The 1:2 complex between RavZ and LC3 reveals a mechanism for deconjugation of LC3 on the phagophore membrane
Autophagy, 13, 2017
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5XAC
 | | CLIR - LC3B | | 分子名称: | Microtubule-associated proteins 1A/1B light chain 3B | | 著者 | Kwon, D.H, Kim, L, Song, H.K. | | 登録日 | 2017-03-12 | | 公開日 | 2017-07-12 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.701 Å) | | 主引用文献 | A novel conformation of the LC3-interacting region motif revealed by the structure of a complex between LC3B and RavZ
Biochem. Biophys. Res. Commun., 490, 2017
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