3MJB
 
 | | Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to sulfate | | 分子名称: | Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SULFATE ION | | 著者 | Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E. | | 登録日 | 2010-04-12 | | 公開日 | 2010-05-19 | | 最終更新日 | 2023-09-06 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
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3MJ3
 | | Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate | | 分子名称: | Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION | | 著者 | Kieft, J.S, Chase, E, Costantino, D.A, Golden, B.L. | | 登録日 | 2010-04-12 | | 公開日 | 2010-05-19 | | 最終更新日 | 2023-09-06 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
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3MJA
 | | Cricket Paralysis Virus IGR IRES Domain 3 RNA bound to selenate, structure #2 | | 分子名称: | Domain 3 of the cricket paralysis virus intergenic region IRES RNA, RNA (5'-R(P*UP*AP*AP*GP*AP*AP*AP*UP*UP*UP*AP*CP*CP*U)-3'), SELENATE ION | | 著者 | Kieft, J.S, Golden, B.L, Costantino, D.A, Chase, E. | | 登録日 | 2010-04-12 | | 公開日 | 2010-05-19 | | 最終更新日 | 2023-09-06 | | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | | 主引用文献 | Identification and characterization of anion binding sites in RNA.
Rna, 16, 2010
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1KH6
 | | Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation. | | 分子名称: | JIIIabc | | 著者 | Kieft, J.S, Zhou, K, Grech, A, Jubin, R, Doudna, J.A. | | 登録日 | 2001-11-29 | | 公開日 | 2002-04-26 | | 最終更新日 | 2024-02-14 | | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | | 主引用文献 | Crystal structure of an RNA tertiary domain essential to HCV IRES-mediated translation initiation.
Nat.Struct.Biol., 9, 2002
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1AJF
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7SCQ
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7SC6
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7SAM
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3B31
 | | Crystal structure of domain III of the Cricket Paralysis Virus IRES RNA | | 分子名称: | IRIDIUM HEXAMMINE ION, PHOSPHATE ION, RNA (29-MER), ... | | 著者 | Kieft, J.S, Costantino, D.A, Pfingsten, J.S, Rambo, R.P. | | 登録日 | 2007-10-19 | | 公開日 | 2007-12-25 | | 最終更新日 | 2024-02-21 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | tRNA-mRNA mimicry drives translation initiation from a viral IRES.
Nat.Struct.Mol.Biol., 15, 2008
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4P5J
 | | Crystal structure of the tRNA-like structure from Turnip Yellow Mosaic Virus (TYMV), a tRNA mimicking RNA | | 分子名称: | IRIDIUM HEXAMMINE ION, MAGNESIUM ION, SPERMINE, ... | | 著者 | Colussi, T.M, Costantino, D.A, Hammond, J.A, Ruehle, G.M, Nix, J.C, Kieft, J.S. | | 登録日 | 2014-03-17 | | 公開日 | 2014-06-04 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (1.9912 Å) | | 主引用文献 | The structural basis of transfer RNA mimicry and conformational plasticity by a viral RNA.
Nature, 511, 2014
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4V83
 | | Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome. | | 分子名称: | 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... | | 著者 | Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. | | 登録日 | 2010-12-13 | | 公開日 | 2014-07-09 | | 最終更新日 | 2014-12-10 | | 実験手法 | X-RAY DIFFRACTION (3.5 Å) | | 主引用文献 | Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
Proc.Natl.Acad.Sci.USA, 108, 2011
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4V84
 | | Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome. | | 分子名称: | 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... | | 著者 | Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S. | | 登録日 | 2010-12-13 | | 公開日 | 2014-07-09 | | 最終更新日 | 2019-07-17 | | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | | 主引用文献 | Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
Proc.Natl.Acad.Sci.USA, 108, 2011
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4PQV
 | | Crystal structure of an Xrn1-resistant RNA from the 3' untranslated region of a flavivirus (Murray Valley Encephalitis virus) | | 分子名称: | MAGNESIUM ION, XRN1-resistant flaviviral RNA | | 著者 | Chapman, E.G, Costantino, D.A, Rabe, J.L, Moon, S.L, Wilusz, J, Nix, J.C, Kieft, J.S. | | 登録日 | 2014-03-04 | | 公開日 | 2014-04-30 | | 最終更新日 | 2024-02-28 | | 実験手法 | X-RAY DIFFRACTION (2.463 Å) | | 主引用文献 | The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production.
Science, 344, 2014
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8FRU
 | | 60S subunit of the Giardia lamblia 80S ribosome | | 分子名称: | 28S rRNA, 5.8S rRNA, 5S rRNA, ... | | 著者 | Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S. | | 登録日 | 2023-01-08 | | 公開日 | 2024-01-31 | | 最終更新日 | 2024-04-17 | | 実験手法 | ELECTRON MICROSCOPY (2.49 Å) | | 主引用文献 | The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function.
Structure, 32, 2024
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8G4S
 | | 40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs. | | 分子名称: | 18S rRNA, 40S ribosomal protein S21, 40S ribosomal protein S25, ... | | 著者 | Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S. | | 登録日 | 2023-02-10 | | 公開日 | 2024-01-31 | | 最終更新日 | 2024-04-17 | | 実験手法 | ELECTRON MICROSCOPY (3.14 Å) | | 主引用文献 | The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function.
Structure, 32, 2024
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8FVY
 | | 40S subunit of the Giardia lamblia 80S ribosome | | 分子名称: | 18S rRNA, 40S ribosomal protein S21, 40S ribosomal protein S25, ... | | 著者 | Eiler, D.R, Wimberly, B.T, Bilodeau, D.Y, Rissland, O.S, Kieft, J.S. | | 登録日 | 2023-01-20 | | 公開日 | 2024-01-24 | | 最終更新日 | 2024-04-17 | | 実験手法 | ELECTRON MICROSCOPY (2.94 Å) | | 主引用文献 | The Giardia lamblia ribosome structure reveals divergence in several biological pathways and the mode of emetine function.
Structure, 32, 2024
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7JJU
 | | Crystal structure of en exoribonuclease-resistant RNA (xrRNA) from Potato leafroll virus (PLRV) | | 分子名称: | CACODYLATE ION, Guanidinium, IRIDIUM HEXAMMINE ION, ... | | 著者 | Steckelberg, A.-L, Vicens, Q, Auffinger, P, Costantino, D.C, Nix, J.C, Kieft, J.S. | | 登録日 | 2020-07-27 | | 公開日 | 2020-09-09 | | 最終更新日 | 2024-03-06 | | 実験手法 | X-RAY DIFFRACTION (2.604 Å) | | 主引用文献 | The crystal structure of a Polerovirus exoribonuclease-resistant RNA shows how diverse sequences are integrated into a conserved fold.
Rna, 26, 2020
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3QQN
 | | The retinal specific CD147 Ig0 domain: from molecular structure to biological activity | | 分子名称: | Basigin | | 著者 | Redzic, J.S, Armstrong, G.S, Isern, N.G, Kieft, J.S, Eisenmesser, E.Z, Berkeley Structural Genomics Center (BSGC) | | 登録日 | 2011-02-15 | | 公開日 | 2011-05-11 | | 最終更新日 | 2011-08-17 | | 実験手法 | X-RAY DIFFRACTION (2.309 Å) | | 主引用文献 | The Retinal Specific CD147 Ig0 Domain: From Molecular Structure to Biological Activity.
J.Mol.Biol., 411, 2011
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3QR2
 | | Wild type CD147 Ig0 domain | | 分子名称: | Basigin | | 著者 | Redzic, J.S, Armstrong, G.S, Isern, N.G, Kieft, J.S, Eisenmesser, E.Z, Berkeley Structural Genomics Center (BSGC) | | 登録日 | 2011-02-16 | | 公開日 | 2011-05-11 | | 最終更新日 | 2011-08-17 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | The Retinal Specific CD147 Ig0 Domain: From Molecular Structure to Biological Activity.
J.Mol.Biol., 411, 2011
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2IL9
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7UVT
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6MJ0
 | | Crystal structure of the complete turnip yellow mosaic virus 3'UTR | | 分子名称: | RNA (101-MER) | | 著者 | Hartwick, E.W, Costantino, D.A, MacFadden, A, Nix, J.C, Tian, S, Das, R, Kieft, J.S. | | 登録日 | 2018-09-20 | | 公開日 | 2019-01-09 | | 最終更新日 | 2023-10-11 | | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | | 主引用文献 | Ribosome-induced RNA conformational changes in a viral 3'-UTR sense and regulate translation levels.
Nat Commun, 9, 2018
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7K16
 | | Tamana Bat Virus xrRNA1 | | 分子名称: | MAGNESIUM ION, RNA (51-MER), SODIUM ION | | 著者 | Jones, R.A, Kieft, J.S. | | 登録日 | 2020-09-07 | | 公開日 | 2020-10-14 | | 最終更新日 | 2023-10-18 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Different tertiary interactions create the same important 3D features in a distinct flavivirus xrRNA.
Rna, 27, 2021
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7KGA
 | | Crystal structure of a mosquito-borne flavivirus dumbbell RNA | | 分子名称: | IRIDIUM HEXAMMINE ION, RNA (90-MER) | | 著者 | Akiyama, B.M, Graham, M.E, O'Donoghue, Z, Beckham, J.D, Kieft, J.S. | | 登録日 | 2020-10-16 | | 公開日 | 2021-06-23 | | 最終更新日 | 2024-03-06 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Three-dimensional structure of a flavivirus dumbbell RNA reveals molecular details of an RNA regulator of replication.
Nucleic Acids Res., 49, 2021
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5TPY
 | | Crystal structure of an exonuclease resistant RNA from Zika virus | | 分子名称: | HEXANE-1,6-DIOL, MAGNESIUM ION, RNA (71-MER) | | 著者 | Akiyama, B.M, Laurence, H.M, Massey, A.R, Costantino, D.A, Xie, X, Yang, Y, Shi, P.-Y, Nix, J.C, Beckham, J.D, Kieft, J.S. | | 登録日 | 2016-10-21 | | 公開日 | 2016-12-14 | | 最終更新日 | 2023-10-04 | | 実験手法 | X-RAY DIFFRACTION (2.805 Å) | | 主引用文献 | Zika virus produces noncoding RNAs using a multi-pseudoknot structure that confounds a cellular exonuclease.
Science, 354, 2016
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