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1VBH
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BU of 1vbh by Molmil
Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize
分子名称: MAGNESIUM ION, PHOSPHOENOLPYRUVATE, SULFATE ION, ...
著者Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-26
公開日2005-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
1VBG
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BU of 1vbg by Molmil
Pyruvate Phosphate Dikinase from Maize
分子名称: MAGNESIUM ION, SULFATE ION, pyruvate,orthophosphate dikinase
著者Nakanishi, T, Nakatsu, T, Matsuoka, M, Sakata, K, Kato, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-02-26
公開日2005-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion
Biochemistry, 44, 2005
5AYU
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BU of 5ayu by Molmil
Crystal structure of HyHEL-10 Fv
分子名称: GLYCEROL, Ig VH,anti-lysozyme, lysozyme binding Ig kappa chain V23-J2 region
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2015-09-04
公開日2016-09-07
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of HyHEL-10 Fv
To Be Published
2YSS
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BU of 2yss by Molmil
Crystal structure of Humanized HYHEL-10 FV mutant(HQ39KW47Y)-HEN lysozyme complex
分子名称: ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2007-04-03
公開日2008-04-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
1VBL
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BU of 1vbl by Molmil
Structure of the thermostable pectate lyase PL 47
分子名称: CALCIUM ION, pectate lyase 47
著者Nakaniwa, T, Tada, T, Yamaguchi, A, Kitatani, T, Takao, M, Sakai, T, Nishimura, K.
登録日2004-02-27
公開日2005-04-19
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Structural Basis for Thermostability of Pectate Lyase from Bacillus sp. TS 47
To be Published
1WFZ
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BU of 1wfz by Molmil
Solution structure of Iron-sulfur cluster protein U (IscU)
分子名称: ZINC ION, nitrogen fixation cluster-like
著者Nakanishi, T, Tomizawa, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-27
公開日2004-11-27
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of Iron-sulfur cluster protein U (IscU)
To be Published
3VUG
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BU of 3vug by Molmil
Crystal structure of a cysteine-deficient mutant M2 in MAP kinase JNK1
分子名称: Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, SULFATE ION
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-06-28
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.24 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUH
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BU of 3vuh by Molmil
Crystal structure of a cysteine-deficient mutant M3 in MAP kinase JNK1
分子名称: GLYCEROL, Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, ...
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-06-28
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUL
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BU of 3vul by Molmil
Crystal structure of a cysteine-deficient mutant M1 in MAP kinase JNK1
分子名称: Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-07-02
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUK
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BU of 3vuk by Molmil
Crystal structure of a cysteine-deficient mutant M5 in MAP kinase JNK1
分子名称: Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, SULFATE ION
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-07-02
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUI
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BU of 3vui by Molmil
Crystal structure of a cysteine-deficient mutant M2 in MAP kinase JNK1
分子名称: Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, SULFATE ION
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-06-28
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUD
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BU of 3vud by Molmil
Crystal structure of a cysteine-deficient mutant M1 in MAP kinase JNK1
分子名称: Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, SULFATE ION
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-06-28
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
3VUM
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BU of 3vum by Molmil
Crystal structure of a cysteine-deficient mutant M7 in MAP kinase JNK1
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Mitogen-activated protein kinase 8, Peptide from C-Jun-amino-terminal kinase-interacting protein 1, ...
著者Nakaniwa, T, Kinoshita, T, Inoue, T.
登録日2012-07-02
公開日2013-02-13
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.69 Å)
主引用文献Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1
Biochemistry, 51, 2012
1V61
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BU of 1v61 by Molmil
Solution Structure of the Pleckstrin Homology Domain of alpha-Pix
分子名称: Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6
著者Nakanishi, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-11-26
公開日2004-05-26
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution Structure of the Pleckstrin Homology Domain of alpha-Pix
To be Published
1WGE
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BU of 1wge by Molmil
Solution structure of the mouse DESR1
分子名称: Hypothetical protein 2610018L09Rik, ZINC ION
著者Nakanishi, T, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2005-08-23
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the mouse DESR1
To be Published
1WFY
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BU of 1wfy by Molmil
Solution structure of the Ras-binding domain of mouse RGS14
分子名称: regulator of G-protein signaling 14; rap1/rap2 interacting protein
著者Nakanishi, T, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-27
公開日2004-11-27
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the Ras-binding domain of mouse RGS14
To be Published
1WGD
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BU of 1wgd by Molmil
Solution structure of the Ubl-domain of Herp
分子名称: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein
著者Nakanishi, T, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the Ubl-domain of Herp
To be Published
1WH0
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BU of 1wh0 by Molmil
Solution structure of the CS domain of human USP19
分子名称: Ubiquitin carboxyl-terminal hydrolase 19
著者Nakanishi, T, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the CS domain of human USP19
To be Published
1WHD
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BU of 1whd by Molmil
Solution structure of the PDZ domain of RGS3
分子名称: regulator of G-protein signaling 3
著者Nakanishi, T, Nemoto, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-28
公開日2004-11-28
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the PDZ domain of RGS3
To be Published
2EIZ
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BU of 2eiz by Molmil
Crystal structure of humanized HYHEL-10 fv mutant(HW47Y)-hen lysozyme complex
分子名称: ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2007-03-14
公開日2008-03-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
2EKS
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BU of 2eks by Molmil
Crystal structure of humanized HyHEL-10 FV-HEN lysozyme complex
分子名称: ANTI-LYSOZYME ANTIBODY FV REGION, Lysozyme C
著者Nakanishi, T, Tsumoto, K, Yokota, A, Kondo, H, Kumagai, I.
登録日2007-03-24
公開日2008-03-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Critical contribution of VH-VL interaction to reshaping of an antibody: the case of humanization of anti-lysozyme antibody, HyHEL-10
Protein Sci., 17, 2008
3E3B
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BU of 3e3b by Molmil
Crystal structure of catalytic subunit of human protein kinase CK2alpha prime with a potent indazole-derivative inhibitor
分子名称: Casein kinase II subunit alpha', [1-(6-{6-[(1-methylethyl)amino]-1H-indazol-1-yl}pyrazin-2-yl)-1H-pyrrol-3-yl]acetic acid
著者Kinoshita, T, Nakaniwa, T, Tada, T.
登録日2008-08-07
公開日2009-03-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Structure of human protein kinase CK2alpha2 with a potent indazole-derivative inhibitor
Acta Crystallogr.,Sect.F, 65, 2009
3VVK
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BU of 3vvk by Molmil
An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin
分子名称: 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, AZIDE ION, BACTERIORUBERIN, ...
著者Kouyama, T, Nakanishi, T.
登録日2012-07-26
公開日2013-06-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide
Biophys.J., 104, 2013
2Z4Q
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BU of 2z4q by Molmil
Crystal structure of a murine antibody FAB 528
分子名称: CADMIUM ION, CHLORIDE ION, anti egfr antibody fab, ...
著者Nakanishi, T, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I.
登録日2007-06-22
公開日2007-10-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
3A6R
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BU of 3a6r by Molmil
E13Q mutant of FMN-binding protein from Desulfovibrio vulgaris (Miyazaki F)
分子名称: CHLORIDE ION, FLAVIN MONONUCLEOTIDE, FMN-binding protein
著者Nakanishi, T, Haruyama, Y, Inoue, H, Kitamura, M.
登録日2009-09-08
公開日2010-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Effects of the disappearance of one charge on ultrafast fluorescence dynamics of the FMN binding protein.
J.Phys.Chem.B, 114, 2010

 

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