6IJY
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8Y1M
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![BU of 8y1m by Molmil](/molmil-images/mine/8y1m) | Xylanase R from Bacillus sp. TAR-1 complexed with xylobiose. | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, ... | 著者 | Nakamura, T, Kuwata, K, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. | 登録日 | 2024-01-25 | 公開日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR. Sci Rep, 14, 2024
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8XY0
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![BU of 8xy0 by Molmil](/molmil-images/mine/8xy0) | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR | 分子名称: | CALCIUM ION, DI(HYDROXYETHYL)ETHER, Endo-1,4-beta-xylanase A | 著者 | Nakamura, T, Takita, T, Mizutani, K, Mikami, B, Nakamura, S, Yasukawa, K. | 登録日 | 2024-01-19 | 公開日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | 主引用文献 | Activity-stability trade-off observed in variants at position 315 of the GH10 xylanase XynR. Sci Rep, 14, 2024
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2NVL
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![BU of 2nvl by Molmil](/molmil-images/mine/2nvl) | Crystal structure of archaeal peroxiredoxin, thioredoxin peroxidase from Aeropyrum pernix K1 (sulfonic acid form) | 分子名称: | Probable peroxiredoxin | 著者 | Nakamura, T, Yamamoto, T, Abe, M, Matsumura, H, Hagihara, Y, Goto, T, Yamaguchi, T, Inoue, T. | 登録日 | 2006-11-13 | 公開日 | 2007-11-20 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.36 Å) | 主引用文献 | Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate Proc.Natl.Acad.Sci.Usa, 105, 2008
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8WWY
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![BU of 8wwy by Molmil](/molmil-images/mine/8wwy) | Crystal structure of mouse TIFA/TIFAB heterodimer | 分子名称: | (2R,5R)-hexane-2,5-diol, TRAF-interacting protein with FHA domain-containing protein A, TRAF-interacting protein with FHA domain-containing protein B | 著者 | Nakamura, T. | 登録日 | 2023-10-27 | 公開日 | 2024-03-13 | 実験手法 | X-RAY DIFFRACTION (1.79 Å) | 主引用文献 | TIFAB regulates the TIFA-TRAF6 signaling pathway involved in innate immunity by forming a heterodimer complex with TIFA. Proc.Natl.Acad.Sci.USA, 121, 2024
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2ZS6
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![BU of 2zs6 by Molmil](/molmil-images/mine/2zs6) | HA3 subcomponent of botulinum type C progenitor toxin | 分子名称: | Hemagglutinin components HA3 | 著者 | Nakamura, T, Tonozuka, T, Kotani, M, Oguma, K, Nishikawa, A. | 登録日 | 2008-09-02 | 公開日 | 2008-09-16 | 最終更新日 | 2024-04-03 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal Structure of the HA3 Subcomponent of Clostridium botulinum Type C Progenitor Toxin J.Mol.Biol., 385, 2009
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6L0C
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6L9W
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6L9V
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6L9U
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![BU of 6l9u by Molmil](/molmil-images/mine/6l9u) | Crystal structure of mouse TIFA | 分子名称: | TRAF-interacting protein with FHA domain-containing protein A | 著者 | Nakamura, T, Yamagata, Y. | 登録日 | 2019-11-11 | 公開日 | 2020-04-01 | 実験手法 | X-RAY DIFFRACTION (2.601 Å) | 主引用文献 | Structural analysis of TIFA: Insight into TIFA-dependent signal transduction in innate immunity. Sci Rep, 10, 2020
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2ZOE
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![BU of 2zoe by Molmil](/molmil-images/mine/2zoe) | HA3 subcomponent of Clostridium botulinum type C progenitor toxin, complex with N-acetylneuramic acid | 分子名称: | Hemagglutinin components HA3, N-acetyl-beta-neuraminic acid | 著者 | Nakamura, T, Kotani, M, Tonozuka, T, Ide, A, Oguma, K, Nishikawa, A. | 登録日 | 2008-05-09 | 公開日 | 2008-12-02 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (2.6 Å) | 主引用文献 | Crystal Structure of the HA3 Subcomponent of Clostridium botulinum Type C Progenitor Toxin J.Mol.Biol., 385, 2009
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4XM0
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![BU of 4xm0 by Molmil](/molmil-images/mine/4xm0) | N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the absence of cadmium | 分子名称: | Uncharacterized protein, ZINC ION | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2019-12-18 | 実験手法 | X-RAY DIFFRACTION (2.8 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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4XM2
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![BU of 4xm2 by Molmil](/molmil-images/mine/4xm2) | N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the absence of cadmium | 分子名称: | Uncharacterized protein, ZINC ION | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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4XLZ
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![BU of 4xlz by Molmil](/molmil-images/mine/4xlz) | N,N'-diacetylchitobiose deacetylase (SeMet derivative) from Pyrococcus furiosus in the presence of cadmium | 分子名称: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, CHLORIDE ION, ... | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.51 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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4XM1
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![BU of 4xm1 by Molmil](/molmil-images/mine/4xm1) | N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus in the presence of cadmium | 分子名称: | CADMIUM ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Nakamura, T, Niiyama, M, Hashimoto, W, Ida, K, Uegaki, K. | 登録日 | 2015-01-14 | 公開日 | 2015-06-10 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Multiple crystal forms of N,N'-diacetylchitobiose deacetylase from Pyrococcus furiosus. Acta Crystallogr.,Sect.F, 71, 2015
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2ZCT
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![BU of 2zct by Molmil](/molmil-images/mine/2zct) | Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate | 分子名称: | Probable peroxiredoxin | 著者 | Nakamura, T, Hagihara, Y, Abe, M, Inoue, T, Yamamoto, T, Matsumura, H. | 登録日 | 2007-11-12 | 公開日 | 2008-05-27 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | 主引用文献 | Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate Proc.Natl.Acad.Sci.Usa, 105, 2008
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3A6V
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3A2W
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![BU of 3a2w by Molmil](/molmil-images/mine/3a2w) | Peroxiredoxin (C50S) from Aeropytum pernix K1 (peroxide-bound form) | 分子名称: | GLYCEROL, PEROXIDE ION, Probable peroxiredoxin | 著者 | Nakamura, T, Kado, Y, Yamaguchi, F, Matsumura, H, Ishikawa, K, Inoue, T. | 登録日 | 2009-06-04 | 公開日 | 2009-10-27 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | 主引用文献 | Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem., 147, 2010
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3A2V
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![BU of 3a2v by Molmil](/molmil-images/mine/3a2v) | Peroxiredoxin (C207S) from Aeropyrum pernix K1 complexed with hydrogen peroxide | 分子名称: | PEROXIDE ION, Probable peroxiredoxin | 著者 | Nakamura, T, Kado, Y, Yamaguchi, F, Ishikawa, K, Matsumura, H, Inoue, T. | 登録日 | 2009-06-04 | 公開日 | 2009-10-27 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.65 Å) | 主引用文献 | Crystal structure of peroxiredoxin from Aeropyrum pernix K1 complexed with its substrate, hydrogen peroxide J.Biochem., 147, 2010
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1X0R
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![BU of 1x0r by Molmil](/molmil-images/mine/1x0r) | Thioredoxin Peroxidase from Aeropyrum pernix K1 | 分子名称: | 1,2-ETHANEDIOL, Probable peroxiredoxin | 著者 | Nakamura, T, Yamamoto, T, Inoue, T, Matsumura, H, Kobayashi, A, Hagihara, Y, Uegaki, K, Ataka, M, Kai, Y, Ishikawa, K. | 登録日 | 2005-03-28 | 公開日 | 2005-12-20 | 最終更新日 | 2021-11-10 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1 Proteins, 62, 2006
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8I1C
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8I1A
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8I1I
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![BU of 8i1i by Molmil](/molmil-images/mine/8i1i) | Crystal structure of human MTH1(G2K/D120N mutant) in complex with 2-oxo-dATP at pH 7.7 | 分子名称: | 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 著者 | Nakamura, T, Yamagata, Y. | 登録日 | 2023-01-13 | 公開日 | 2023-03-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
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8I1D
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![BU of 8i1d by Molmil](/molmil-images/mine/8i1d) | Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 7.7 | 分子名称: | 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 著者 | Nakamura, T, Yamagata, Y. | 登録日 | 2023-01-13 | 公開日 | 2023-03-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.2 Å) | 主引用文献 | Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
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8I1E
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![BU of 8i1e by Molmil](/molmil-images/mine/8i1e) | Crystal structure of human MTH1(G2K mutant) in complex with 2-oxo-dATP at pH 8.0 | 分子名称: | 7,8-dihydro-8-oxoguanine triphosphatase, SODIUM ION, [[(2R,3S,5R)-5-(6-azanyl-2-oxidanylidene-1H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate | 著者 | Nakamura, T, Yamagata, Y. | 登録日 | 2023-01-13 | 公開日 | 2023-03-22 | 最終更新日 | 2024-05-29 | 実験手法 | X-RAY DIFFRACTION (1.1 Å) | 主引用文献 | Protonation states of Asp residues in the human Nudix hydrolase MTH1 contribute to its broad substrate recognition. Febs Lett., 597, 2023
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