Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3CM6
DownloadVisualize
BU of 3cm6 by Molmil
Crystal structure of cell-death related nuclease 4 (CRN-4) bound with Er
分子名称: Cell death-related nuclease 4, ERBIUM (III) ION, ZINC ION
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2008-03-21
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation
Mol.Cell.Biol., 29, 2009
3CG7
DownloadVisualize
BU of 3cg7 by Molmil
Crystal structure of cell-death related nuclease 4 (CRN-4)
分子名称: Cell death-related nuclease 4, ZINC ION
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2008-03-05
公開日2008-12-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation
Mol.Cell.Biol., 29, 2009
3CM5
DownloadVisualize
BU of 3cm5 by Molmil
Crystal structure of Cell-Death Related Nuclease 4 (CRN-4) bound with Mn
分子名称: Cell death-related nuclease 4, MANGANESE (II) ION, ZINC ION
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2008-03-21
公開日2008-12-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Crystal structure of CRN-4: implications for domain function in apoptotic DNA degradation
Mol.Cell.Biol., 29, 2009
3NH0
DownloadVisualize
BU of 3nh0 by Molmil
Crystal structure of RNase T in complex with a non-preferred ssDNA (AAC)
分子名称: 5'-D(*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2010-06-14
公開日2011-02-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation
Nat.Chem.Biol., 7, 2011
3NGZ
DownloadVisualize
BU of 3ngz by Molmil
Crystal structure of RNase T in complex with a non-preferred ssDNA (GC) with one Mg in the active site
分子名称: 5'-D(P*GP*C)-3', COBALT (II) ION, MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2010-06-14
公開日2011-02-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation
Nat.Chem.Biol., 7, 2011
3NH2
DownloadVisualize
BU of 3nh2 by Molmil
Crystal structure of RNase T in complex with a stem DNA with a 3' overhang
分子名称: 5'-D(P*TP*TP*AP*CP*AP*AP*C)-3', Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2010-06-14
公開日2011-02-16
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation
Nat.Chem.Biol., 7, 2011
3NGY
DownloadVisualize
BU of 3ngy by Molmil
Crystal structure of RNase T (E92G mutant)
分子名称: COBALT (II) ION, Ribonuclease T, his tag sequence
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2010-06-14
公開日2011-02-16
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (2.204 Å)
主引用文献Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation
Nat.Chem.Biol., 7, 2011
3NH1
DownloadVisualize
BU of 3nh1 by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (TAGG) with two Mg in the active site
分子名称: 5'-D(*TP*TP*AP*TP*AP*GP*G)-3', MAGNESIUM ION, Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2010-06-14
公開日2011-02-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.107 Å)
主引用文献Structural basis for RNA trimming by RNase T in stable RNA 3'-end maturation
Nat.Chem.Biol., 7, 2011
3V9W
DownloadVisualize
BU of 3v9w by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site
分子名称: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2024-11-06
実験手法X-RAY DIFFRACTION (1.702 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9Z
DownloadVisualize
BU of 3v9z by Molmil
Crystal structure of RNase T in complex with a product ssDNA (ACC) with one Mg in the active site
分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*CP*C)-3'), MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9S
DownloadVisualize
BU of 3v9s by Molmil
Crystal structure of RNase T in complex with a product ssDNA (AAC) with one Mg in the active site
分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*C)-3'), MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9U
DownloadVisualize
BU of 3v9u by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (AAT) with two Mg in the active site
分子名称: COBALT (II) ION, DNA (5'-D(*TP*TP*AP*CP*AP*AP*T)-3'), MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.298 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3VA3
DownloadVisualize
BU of 3va3 by Molmil
Crystal structure of RNase T in complex with a duplex DNA product (stem loop DNA with 2 nucleotide 3' overhang)
分子名称: COBALT (II) ION, DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.714 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3V9X
DownloadVisualize
BU of 3v9x by Molmil
Crystal structure of RNase T in complex with a preferred ssDNA (AAA) with two Mg in the active site
分子名称: DNA (5'-D(*TP*TP*AP*TP*AP*AP*A)-3'), MAGNESIUM ION, Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
3VA0
DownloadVisualize
BU of 3va0 by Molmil
Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site
分子名称: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2011-12-28
公開日2012-07-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.201 Å)
主引用文献How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes
Nucleic Acids Res., 40, 2012
5DK5
DownloadVisualize
BU of 5dk5 by Molmil
Crystal structure of CRN-4-MES complex
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Cell death-related nuclease 4, ISOPROPYL ALCOHOL, ...
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2015-09-03
公開日2016-08-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification of Inhibitors for the DEDDh Family of Exonucleases and a Unique Inhibition Mechanism by Crystal Structure Analysis of CRN-4 Bound with 2-Morpholin-4-ylethanesulfonate (MES)
J.Med.Chem., 59, 2016
1M07
DownloadVisualize
BU of 1m07 by Molmil
RESIDUES INVOLVED IN THE CATALYSIS AND BASE SPECIFICITY OF CYTOTOXIC RIBONUCLEASE FROM BULLFROG (RANA CATESBEIANA)
分子名称: 5'-D(*AP*CP*GP*A)-3', Ribonuclease
著者Leu, Y.-J, Chern, S.-S, Wang, S.-C, Hsiao, Y.-Y, Amiraslanov, I, Liaw, Y.-C, Liao, Y.-D.
登録日2002-06-12
公開日2003-01-21
最終更新日2024-11-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Residues involved in the catalysis, base specificity, and cytotoxicity of ribonuclease from Rana catesbeiana based upon mutagenesis and X-ray crystallography
J.Biol.Chem., 278, 2003
3HKM
DownloadVisualize
BU of 3hkm by Molmil
Crystal Structure of rice(Oryza sativa) Rrp46
分子名称: Os03g0854200 protein
著者Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Yuan, H.S.
登録日2009-05-25
公開日2010-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9845 Å)
主引用文献Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation
Rna, 16, 2010
3KRN
DownloadVisualize
BU of 3krn by Molmil
Crystal Structure of C. elegans cell-death-related nuclease 5(CRN-5)
分子名称: Protein C14A4.5, confirmed by transcript evidence
著者Yang, C.-C, Wang, Y.-T, Hsiao, Y.-Y, Doudeva, L.G, Chow, S.Y, Yuan, H.S.
登録日2009-11-19
公開日2010-01-26
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.918 Å)
主引用文献Structural and biochemical characterization of CRN-5 and Rrp46: an exosome component participating in apoptotic DNA degradation
Rna, 16, 2010
4KAZ
DownloadVisualize
BU of 4kaz by Molmil
Crystal structure of RNase T in complex with a Y structured DNA
分子名称: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2013-04-23
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
4KB1
DownloadVisualize
BU of 4kb1 by Molmil
Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT )
分子名称: Bulge DNA, MAGNESIUM ION, Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2013-04-23
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
4KB0
DownloadVisualize
BU of 4kb0 by Molmil
Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC )
分子名称: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T
著者Hsiao, Y.-Y, Yuan, H.S.
登録日2013-04-23
公開日2014-03-05
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.004 Å)
主引用文献Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.
Plos Biol., 12, 2014
4P5U
DownloadVisualize
BU of 4p5u by Molmil
Crystal structure of TatD
分子名称: Tat-linked quality control protein TatD
著者Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
登録日2014-03-20
公開日2014-08-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
4PE8
DownloadVisualize
BU of 4pe8 by Molmil
Crystal structure of TatD in complex with trinucleotide DNA
分子名称: DNA (5'-D(*GP*CP*T)-3'), Tat-linked quality control protein TatD
著者Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S.
登録日2014-04-23
公開日2014-08-27
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.894 Å)
主引用文献Structure and function of TatD exonuclease in DNA repair.
Nucleic Acids Res., 42, 2014
5GYJ
DownloadVisualize
BU of 5gyj by Molmil
Structure of catalytically active sortase from Clostridium difficile
分子名称: Putative peptidase C60B, sortase B
著者Yin, J.-C, Fei, C.-H, Hsiao, Y.-Y, Nix, J.C, Huang, I.-H, Wang, S.
登録日2016-09-22
公開日2017-01-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.801 Å)
主引用文献Structural Insights into Substrate Recognition by Clostridium difficile Sortase.
Front Cell Infect Microbiol, 6, 2016

 

12>

227344

件を2024-11-13に公開中

PDB statisticsPDBj update infoContact PDBjnumon