2W6R
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![BU of 2w6r by Molmil](/molmil-images/mine/2w6r) | Crystal structure of an artificial (ba)8-barrel protein designed from identical half barrels | 分子名称: | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF | 著者 | Hocker, B, Lochner, A, Seitz, T, Claren, J, Sterner, R. | 登録日 | 2008-12-18 | 公開日 | 2009-02-03 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | High-Resolution Crystal Structure of an Artificial (Betaalpha)(8)-Barrel Protein Designed from Identical Half-Barrels. Biochemistry, 48, 2009
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4Q37
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2W79
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![BU of 2w79 by Molmil](/molmil-images/mine/2w79) | Establishing wild-type levels of catalytic activity on natural and artificial (ba)8-barrel protein scaffolds | 分子名称: | 1-(5-PHOSPHORIBOSYL)-5-[(5-PHOSPHORIBOSYLAMINO) METHYLIDENEAMINO] IMIDAZOLE-4-CARBOXAMIDE ISOMERASE, CHLORIDE ION | 著者 | Claren, J, Malisi, C, Hocker, B, Sterner, R. | 登録日 | 2008-12-21 | 公開日 | 2009-02-17 | 最終更新日 | 2023-12-13 | 実験手法 | X-RAY DIFFRACTION (1.85 Å) | 主引用文献 | Establishing Wild-Type Levels of Catalytic Activity on Natural and Artificial (Beta Alpha)8- Barrel Protein Scaffolds. Proc.Natl.Acad.Sci.USA, 106, 2009
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8AT0
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![BU of 8at0 by Molmil](/molmil-images/mine/8at0) | |
8ASZ
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3CWO
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![BU of 3cwo by Molmil](/molmil-images/mine/3cwo) | A beta/alpha-barrel built by the combination of fragments from different folds | 分子名称: | SULFATE ION, beta/alpha-barrel protein based on 1THF and 1TMY | 著者 | Bharat, T.A.M, Eisenbeis, S, Zeth, K, Hocker, B. | 登録日 | 2008-04-22 | 公開日 | 2008-07-08 | 最終更新日 | 2023-08-30 | 実験手法 | X-RAY DIFFRACTION (3.1 Å) | 主引用文献 | A beta alpha-barrel built by the combination of fragments from different folds. Proc.Natl.Acad.Sci.Usa, 105, 2008
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5OWF
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![BU of 5owf by Molmil](/molmil-images/mine/5owf) | Structure of a LAO-binding protein mutant with glutamine | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, GLUTAMINE, ... | 著者 | Shanmugaratnam, S, Banda-Vazquez, J, Sosa-Peinado, A, Hocker, B. | 登録日 | 2017-08-31 | 公開日 | 2018-03-21 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | 主引用文献 | Redesign of LAOBP to bind novel l-amino acid ligands. Protein Sci., 27, 2018
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5BVL
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2LLE
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![BU of 2lle by Molmil](/molmil-images/mine/2lle) | Computational design of an eight-stranded (beta/alpha)-barrel from fragments of different folds | 分子名称: | Chemotaxis protein CheY, Imidazole glycerol phosphate synthase subunit HisF chimera | 著者 | Coles, M, Truffault, V, Eisenbeis, S, Proffitt, W, Meiler, J, Hocker, B. | 登録日 | 2011-11-07 | 公開日 | 2012-03-21 | 最終更新日 | 2024-05-01 | 実験手法 | SOLUTION NMR | 主引用文献 | Potential of fragment recombination for rational design of proteins. J.Am.Chem.Soc., 134, 2012
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8Q52
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![BU of 8q52 by Molmil](/molmil-images/mine/8q52) | A PBP-like protein built from fragments of different folds | 分子名称: | Leucine-specific-binding protein,Chemotaxis protein CheY, SULFATE ION | 著者 | Shanmugaratnam, S, Toledo-Patino, S, Goetz, S.K, Farias-Rico, J.A, Hocker, B. | 登録日 | 2023-08-08 | 公開日 | 2024-04-10 | 最終更新日 | 2024-06-19 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Molecular handcraft of a well-folded protein chimera. Febs Lett., 598, 2024
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8R8O
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![BU of 8r8o by Molmil](/molmil-images/mine/8r8o) | Hallucinated de novo TIM barrel with three helical extensions - HalluTIM3-1 | 分子名称: | ACETATE ION, CHLORIDE ION, GLYCEROL, ... | 著者 | Beck, J, Shanmugaratnam, S, Hocker, B. | 登録日 | 2023-11-29 | 公開日 | 2024-05-22 | 実験手法 | X-RAY DIFFRACTION (2.15 Å) | 主引用文献 | Diversifying de novo TIM barrels by hallucination. Protein Sci., 33, 2024
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8R8N
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6SLD
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![BU of 6sld by Molmil](/molmil-images/mine/6sld) | Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol | 分子名称: | (1R)-2-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}-1-[(octadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, CRAL-TRIO domain-containing protein YKL091C | 著者 | Berger, J, Fitz, M, Johnen, P, Shanmugaratnam, S, Hocker, B, Stiel, A.C, Schaaf, G. | 登録日 | 2019-08-19 | 公開日 | 2020-08-19 | 最終更新日 | 2024-05-15 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | Structure of the Phosphatidylcholine Binding Mutant of Yeast Sec14 Homolog Sfh1 (S175I,T177I) in Complex with Phosphatidylinositol To Be Published
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6T1E
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![BU of 6t1e by Molmil](/molmil-images/mine/6t1e) | Streptavidin variants harbouring an artificial organocatalyst based cofactor | 分子名称: | 5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide, ACETATE ION, CHLORIDE ION, ... | 著者 | Lechner, H, Hocker, B. | 登録日 | 2019-10-04 | 公開日 | 2020-10-14 | 最終更新日 | 2024-05-15 | 実験手法 | X-RAY DIFFRACTION (1.3 Å) | 主引用文献 | An Artificial Cofactor Catalyzing the Baylis-Hillman Reaction with Designed Streptavidin as Protein Host*. Chembiochem, 22, 2021
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4J5N
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![BU of 4j5n by Molmil](/molmil-images/mine/4j5n) | Crystal Structure of a Deinococcus radiodurans PTE-like lactonase (drPLL) mutant Y28L/D71N/E101G/E179D/V235L/L270M | 分子名称: | COBALT (II) ION, Phosphotriesterase, putative | 著者 | Meier, M.M, Rajendran, C, Malisi, C, Fox, N.G, Xu, C, Schlee, S, Barondeau, D.P, Hocker, B, Sterner, R, Raushel, F.M. | 登録日 | 2013-02-08 | 公開日 | 2013-07-24 | 最終更新日 | 2023-12-06 | 実験手法 | X-RAY DIFFRACTION (2.05 Å) | 主引用文献 | Molecular engineering of organophosphate hydrolysis activity from a weak promiscuous lactonase template. J.Am.Chem.Soc., 135, 2013
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6YED
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![BU of 6yed by Molmil](/molmil-images/mine/6yed) | E.coli's Putrescine receptor PotF in its open apo state | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Shanmugaratnam, S, Kroeger, P, Hocker, B. | 登録日 | 2020-03-24 | 公開日 | 2021-01-20 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.18 Å) | 主引用文献 | A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
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6YE6
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![BU of 6ye6 by Molmil](/molmil-images/mine/6ye6) | E.coli's Putrescine receptor PotF complexed with Agmatine | 分子名称: | (2R)-1-methoxypropan-2-amine, (2~{R})-1-[(2~{R})-1-(2-methoxyethoxy)propan-2-yl]oxypropan-2-amine, (2~{S})-1-(2-methoxyethoxy)propan-2-amine, ... | 著者 | Shanmugaratnam, S, Kroeger, P, Hocker, B. | 登録日 | 2020-03-24 | 公開日 | 2021-01-20 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.56 Å) | 主引用文献 | A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
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6YE8
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![BU of 6ye8 by Molmil](/molmil-images/mine/6ye8) | E.coli's Putrescine receptor PotF complexed with Spermidine | 分子名称: | (2R)-1-methoxypropan-2-amine, (2~{S})-1-(2-methoxyethoxy)propan-2-amine, CHLORIDE ION, ... | 著者 | Shanmugaratnam, S, Kroeger, P, Hocker, B. | 登録日 | 2020-03-24 | 公開日 | 2021-01-20 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
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6YEB
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![BU of 6yeb by Molmil](/molmil-images/mine/6yeb) | E.coli's Putrescine receptor PotF in its closed apo state | 分子名称: | 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | 著者 | Shanmugaratnam, S, Kroeger, P, Hocker, B. | 登録日 | 2020-03-24 | 公開日 | 2021-01-20 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.97 Å) | 主引用文献 | A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
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6YE7
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![BU of 6ye7 by Molmil](/molmil-images/mine/6ye7) | E.coli's Putrescine receptor PotF complexed with Cadaverine | 分子名称: | 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, ... | 著者 | Shanmugaratnam, S, Kroeger, P, Hocker, B. | 登録日 | 2020-03-24 | 公開日 | 2021-01-20 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | A comprehensive binding study illustrates ligand recognition in the periplasmic binding protein PotF. Structure, 29, 2021
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2WRZ
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![BU of 2wrz by Molmil](/molmil-images/mine/2wrz) | Crystal structure of an arabinose binding protein with designed serotonin binding site in open, ligand-free state | 分子名称: | L-ARABINOSE-BINDING PERIPLASMIC PROTEIN | 著者 | Schreier, B, Stumpp, C, Wiesner, S, Hocker, B. | 登録日 | 2009-09-03 | 公開日 | 2009-10-13 | 最終更新日 | 2023-12-20 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | The Computational Design of Ligand Binding is not a Solved Problem Proc.Natl.Acad.Sci.USA, 106, 2009
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2GHB
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![BU of 2ghb by Molmil](/molmil-images/mine/2ghb) | Thermotoga maritima maltotriose binding protein, ligand free form | 分子名称: | maltose ABC transporter, periplasmic maltose-binding protein | 著者 | Cuneo, M.J, Changela, A, Hocker, B, Beese, L.S, Hellinga, H.W. | 登録日 | 2006-03-27 | 公開日 | 2007-02-06 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | 主引用文献 | T. maritima maltotriose binding protein open form To be Published
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2GHA
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![BU of 2gha by Molmil](/molmil-images/mine/2gha) | Thermotoga maritima maltotriose binding protein bound with maltotriose | 分子名称: | alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, maltose ABC transporter, periplasmic maltose-binding protein | 著者 | Cuneo, M.J, Changela, A, Hocker, B, Beese, L.S, Hellinga, H.W. | 登録日 | 2006-03-27 | 公開日 | 2007-02-06 | 最終更新日 | 2024-02-14 | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | 主引用文献 | T. maritima maltotriose binding protein To be Published
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7Q1R
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![BU of 7q1r by Molmil](/molmil-images/mine/7q1r) | A de novo designed homo-dimeric antiparallel coiled coil apCC-Di | 分子名称: | ETHANOL, SODIUM ION, apCC-Di | 著者 | Shanmugaratnam, S, Rhys, G.G, Dawson, W.M, Woolfson, D.N, Hocker, B. | 登録日 | 2021-10-20 | 公開日 | 2022-07-20 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.08 Å) | 主引用文献 | De novo designed peptides for cellular delivery and subcellular localisation. Nat.Chem.Biol., 18, 2022
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7Q1S
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![BU of 7q1s by Molmil](/molmil-images/mine/7q1s) | A de novo designed hetero-dimeric antiparallel coiled coil apCC-Di-AB_var | 分子名称: | 1,2-ETHANEDIOL, apCC-Di-A_var, apCC-Di-B_var | 著者 | Shanmugaratnam, S, Rhys, G.G, Dawson, W.M, Woolfson, D.N, Hocker, B. | 登録日 | 2021-10-20 | 公開日 | 2022-07-20 | 最終更新日 | 2024-05-01 | 実験手法 | X-RAY DIFFRACTION (1.99 Å) | 主引用文献 | De novo designed peptides for cellular delivery and subcellular localisation. Nat.Chem.Biol., 18, 2022
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