Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2CVH
DownloadVisualize
BU of 2cvh by Molmil
Crystal structure of the RadB recombinase
分子名称: DNA repair and recombination protein radB
著者Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
登録日2005-06-03
公開日2005-08-09
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
2ZTB
DownloadVisualize
BU of 2ztb by Molmil
Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Crystal protein, ...
著者Akiba, T.
登録日2008-09-29
公開日2009-01-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Crystal structure of the parasporin-2 Bacillus thuringiensis toxin that recognizes cancer cells
J.Mol.Biol., 386, 2009
2D42
DownloadVisualize
BU of 2d42 by Molmil
Crystal structure analysis of a non-toxic crystal protein from Bacillus thuringiensis
分子名称: non-toxic crystal protein
著者Akiba, T, Higuchi, K, Mizuki, E, Ekino, K, Shin, T, Ohba, M, Kanai, R, Harata, K.
登録日2005-10-05
公開日2006-01-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Nontoxic crystal protein from Bacillus thuringiensis demonstrates a remarkable structural similarity to beta-pore-forming toxins
Proteins, 63, 2006
2CVF
DownloadVisualize
BU of 2cvf by Molmil
Crystal structure of the RadB recombinase
分子名称: DNA repair and recombination protein radB
著者Akiba, T, Ishii, N, Rashid, N, Morikawa, M, Imanaka, T, Harata, K.
登録日2005-06-03
公開日2005-08-09
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structure of RadB recombinase from a hyperthermophilic archaeon, Thermococcus kodakaraensis KOD1: an implication for the formation of a near-7-fold helical assembly
Nucleic Acids Res., 33, 2005
1VFF
DownloadVisualize
BU of 1vff by Molmil
beta-glycosidase from Pyrococcus horikoshii
分子名称: beta-glucosidase
著者Akiba, T, Nishio, M, Matsui, I, Harata, K.
登録日2004-04-12
公開日2005-03-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献X-ray structure of a membrane-bound beta-glycosidase from the hyperthermophilic archaeon Pyrococcus horikoshii
Proteins, 57, 2004
5AWL
DownloadVisualize
BU of 5awl by Molmil
CRYSTAL STRUCTURE OF A MUTANT OF CHIGNOLIN, CLN025
分子名称: A mutant of Chignolin, CLN025
著者Akiba, T, Ishimura, M, Odahara, T, Harata, K, Honda, S.
登録日2015-07-05
公開日2015-08-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Crystal structure of a ten-amino acid protein
J.Am.Chem.Soc., 130, 2008
2O4A
DownloadVisualize
BU of 2o4a by Molmil
Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA
分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
著者Yamasaki, K, Akiba, T, Harata, K.
登録日2006-12-04
公開日2007-08-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2O49
DownloadVisualize
BU of 2o49 by Molmil
Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA
分子名称: DNA (5'-D(*DGP*DCP*DAP*DTP*DAP*DTP*DAP*DTP*DTP*DAP*DGP*DC)-3'), DNA (5'-D(*DGP*DCP*DTP*DAP*DAP*DTP*DAP*DTP*DAP*DTP*DGP*DC)-3'), DNA-binding protein SATB1
著者Yamasaki, K, Akiba, T, Harata, K.
登録日2006-12-04
公開日2007-08-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1.
Nucleic Acids Res., 35, 2007
2Z12
DownloadVisualize
BU of 2z12 by Molmil
Structure of the transformed monoclinic lysozyme by controlled dehydration
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Harata, K, Akiba, T.
登録日2007-05-07
公開日2008-03-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
2Z18
DownloadVisualize
BU of 2z18 by Molmil
Phase transition of monoclinic lysozyme crystal soaked in a 10% NaCl solution
分子名称: CHLORIDE ION, Lysozyme C, NITROGEN MOLECULE, ...
著者Harata, K, Akiba, T.
登録日2007-05-08
公開日2008-03-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
2Z19
DownloadVisualize
BU of 2z19 by Molmil
Phase transition of monoclinic lysozyme crystal soaked in a saturated NaCl solution
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Harata, K, Akiba, T.
登録日2007-05-08
公開日2008-03-18
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Effect of a sodium ion on the dehydration-induced phase transition of monoclinic lysozyme crystals.
Acta Crystallogr.,Sect.D, 63, 2007
2D3L
DownloadVisualize
BU of 2d3l by Molmil
Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltopentaose.
分子名称: CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, SODIUM ION, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2005-09-29
公開日2006-03-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707
Protein Sci., 15, 2006
2D3N
DownloadVisualize
BU of 2d3n by Molmil
Crystal structure of maltohexaose-producing amylase from Bacillus sp.707 complexed with maltohexaose
分子名称: CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, SODIUM ION, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2005-09-29
公開日2006-03-14
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Role of Trp140 at subsite -6 on the maltohexaose production of maltohexaose-producing amylase from alkalophilic Bacillus sp.707
Protein Sci., 15, 2006
1WP6
DownloadVisualize
BU of 1wp6 by Molmil
Crystal structure of maltohexaose-producing amylase from alkalophilic Bacillus sp.707.
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, Glucan 1,4-alpha-maltohexaosidase, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2004-08-31
公開日2004-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Biochemical and crystallographic analyses of maltohexaose-producing amylase from alkalophilic Bacillus sp. 707
Biochemistry, 43, 2004
1WPC
DownloadVisualize
BU of 1wpc by Molmil
Crystal structure of maltohexaose-producing amylase complexed with pseudo-maltononaose
分子名称: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2004-09-01
公開日2004-11-30
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Biochemical and crystallographic analyses of maltohexaose-producing amylase from alkalophilic Bacillus sp. 707
Biochemistry, 43, 2004
1V3M
DownloadVisualize
BU of 1v3m by Molmil
Crystal structure of F283Y mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose
分子名称: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, CALCIUM ION, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2003-11-03
公開日2004-08-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3K
DownloadVisualize
BU of 1v3k by Molmil
Crystal structure of F283Y mutant cyclodextrin glycosyltransferase
分子名称: CALCIUM ION, Cyclomaltodextrin glucanotransferase
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2003-11-03
公開日2004-08-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V3L
DownloadVisualize
BU of 1v3l by Molmil
Crystal structure of F283L mutant cyclodextrin glycosyltransferase complexed with a pseudo-tetraose derived from acarbose
分子名称: 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-alpha-D-xylo-hexopyranose-(1-4)-beta-D-galactopyranose, 6-AMINO-4-HYDROXYMETHYL-CYCLOHEX-4-ENE-1,2,3-TRIOL, ...
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2003-11-03
公開日2004-08-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V7T
DownloadVisualize
BU of 1v7t by Molmil
Triclinic lysozyme with low solvent content obtained by phase transition
分子名称: Lysozyme C, NITRATE ION, SODIUM ION
著者Harata, K, Akiba, T.
登録日2003-12-22
公開日2004-04-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Phase transition of triclinic hen egg-white lysozyme crystal associated with sodium binding.
Acta Crystallogr.,Sect.D, 60, 2004
1V3J
DownloadVisualize
BU of 1v3j by Molmil
Crystal structure of F283L mutant cyclodextrin glycosyltransferase
分子名称: CALCIUM ION, Cyclomaltodextrin glucanotransferase
著者Kanai, R, Haga, K, Akiba, T, Yamane, K, Harata, K.
登録日2003-11-03
公開日2004-08-03
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Role of Phe283 in enzymatic reaction of cyclodextrin glycosyltransferase from alkalophilic Bacillus sp.1011: Substrate binding and arrangement of the catalytic site
PROTEIN SCI., 13, 2004
1V7S
DownloadVisualize
BU of 1v7s by Molmil
Triclinic hen lysozyme crystallized at 313K from a D2O solution
分子名称: Lysozyme C, NITRATE ION
著者Harata, K, Akiba, T.
登録日2003-12-22
公開日2004-04-06
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.14 Å)
主引用文献Phase transition of triclinic hen egg-white lysozyme crystal associated with sodium binding.
Acta Crystallogr.,Sect.D, 60, 2004
2DFC
DownloadVisualize
BU of 2dfc by Molmil
Xylanase II from Tricoderma reesei at 293K
分子名称: Endo-1,4-beta-xylanase 2, IODIDE ION
著者Harata, K, Akiba, T.
登録日2006-02-28
公開日2006-07-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.19 Å)
主引用文献Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2DFB
DownloadVisualize
BU of 2dfb by Molmil
Xylanase II from Tricoderma reesei at 100K
分子名称: Endo-1,4-beta-xylanase 2, IODIDE ION, SULFATE ION
著者Harata, K, Akiba, T.
登録日2006-02-28
公開日2006-07-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.11 Å)
主引用文献Structure of an orthorhombic form of xylanase II from Trichoderma reesei and analysis of thermal displacement.
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D4K
DownloadVisualize
BU of 2d4k by Molmil
Monoclinic hen egg-white lysozyme crystallized at 313K
分子名称: CHLORIDE ION, Lysozyme C, SODIUM ION
著者Harata, K, Akiba, T.
登録日2005-10-20
公開日2006-07-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structural phase transition of monoclinic crystals of hen egg-white lysozyme
ACTA CRYSTALLOGR.,SECT.D, 62, 2006
2D4I
DownloadVisualize
BU of 2d4i by Molmil
Monoclinic hen egg-white lysozyme crystallized at pH4.5 form heavy water solution
分子名称: Lysozyme C, NITRATE ION, SODIUM ION
著者Harata, K, Akiba, T.
登録日2005-10-20
公開日2006-07-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Structural phase transition of monoclinic crystals of hen egg-white lysozyme
ACTA CRYSTALLOGR.,SECT.D, 62, 2006

 

12>

222926

件を2024-07-24に公開中

PDB statisticsPDBj update infoContact PDBjnumon