Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2NOO
DownloadVisualize
BU of 2noo by Molmil
Crystal Structure of Mutant NikA
分子名称: IODIDE ION, NICKEL (II) ION, Nickel-binding periplasmic protein
著者Addy, C, Ohara, M, Kawai, F, Kidera, A, Ikeguchi, M, Fuchigami, S, Osawa, M, Shimada, I, Park, S.Y, Tame, J.R.H, Heddle, J.G.
登録日2006-10-26
公開日2007-01-23
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Nickel binding to NikA: an additional binding site reconciles spectroscopy, calorimetry and crystallography.
Acta Crystallogr.,Sect.D, 63, 2007
4ZCN
DownloadVisualize
BU of 4zcn by Molmil
Crystal structure of nvPizza2-S16S58
分子名称: IODIDE ION, SULFATE ION, nvPizza2-S16S58
著者Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H.
登録日2015-04-16
公開日2015-07-01
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of nvPizza2-S16S58
To Be Published
5CHB
DownloadVisualize
BU of 5chb by Molmil
Crystal structure of nvPizza2-S16H58 coordinating a CdCl2 nanocrystal
分子名称: CADMIUM ION, CHLORIDE ION, SULFATE ION, ...
著者Voet, A.R.D, Noguchi, H, Addy, C, Zhang, K.Y.J, Tame, J.R.H.
登録日2015-07-10
公開日2015-07-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein
Angew.Chem.Int.Ed.Engl., 54, 2015
6G6P
DownloadVisualize
BU of 6g6p by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.2 in P63
分子名称: Ika8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6M
DownloadVisualize
BU of 6g6m by Molmil
Crystal structure of the computationally designed Tako8 protein in P42212
分子名称: SULFATE ION, Tako8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6Q
DownloadVisualize
BU of 6g6q by Molmil
Crystal structure of the computationally designed Ika4 protein
分子名称: Ika4
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6O
DownloadVisualize
BU of 6g6o by Molmil
Crystal structure of the computationally designed Ika8 protein: crystal packing No.1 in P63
分子名称: GLYCEROL, Ika8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
6G6N
DownloadVisualize
BU of 6g6n by Molmil
Crystal structure of the computationally designed Tako8 protein in C2
分子名称: Tako8
著者Noguchi, H, Addy, C, Simoncini, D, Van Meervelt, L, Schiex, T, Zhang, K.Y.J, Tame, J.R.H, Voet, A.R.D.
登録日2018-04-01
公開日2018-11-28
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.001 Å)
主引用文献Computational design of symmetrical eight-bladed beta-propeller proteins.
IUCrJ, 6, 2019
3WWB
DownloadVisualize
BU of 3wwb by Molmil
Crystal structure of the computationally designed Pizza2-SR protein
分子名称: Pizza2-SR protein
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
3WWF
DownloadVisualize
BU of 3wwf by Molmil
Crystal structure of the computationally designed Pizza2-SR protein
分子名称: pizza2sr-pb protein
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
3WWA
DownloadVisualize
BU of 3wwa by Molmil
Crystal structure of the computationally designed Pizza7 protein after heat treatment
分子名称: ISOPROPYL ALCOHOL, Pizza7H protein
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.988 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
3WW9
DownloadVisualize
BU of 3ww9 by Molmil
Crystal structure of the computationally designed Pizza6 protein
分子名称: GLYCEROL, SULFATE ION, pizza6 protein
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.33 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
3WW7
DownloadVisualize
BU of 3ww7 by Molmil
Crystal structure of the computationally designed Pizza2 protein
分子名称: GLYCEROL, Pizza2 protein
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.697 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
3WW8
DownloadVisualize
BU of 3ww8 by Molmil
Crystal structure of the computationally designed Pizza3 protein
分子名称: GLYCEROL, Pizza3 protein, SULFATE ION
著者Voet, A.R.D, Noguchi, H, Addy, C, Simoncini, D, Terada, D, Unzai, S, Park, S.Y, Zhang, K.Y.J, Tame, J.R.H.
登録日2014-06-17
公開日2014-10-08
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.402 Å)
主引用文献Computational design of a self-assembling symmetrical beta-propeller protein.
Proc.Natl.Acad.Sci.USA, 111, 2014
5F53
DownloadVisualize
BU of 5f53 by Molmil
Nano-ring of cadmium ions coordinated by nvPizza2-S16S58
分子名称: CADMIUM ION, CHLORIDE ION, NVPIZZA2-S16S58
著者Voet, A.R.D, Tame, J.R.H.
登録日2015-12-04
公開日2016-12-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A cadmium chloride ring created by a designed symmetrical protein
To Be Published
5I1Z
DownloadVisualize
BU of 5i1z by Molmil
Structure of nvPizza2-H16S58
分子名称: SULFATE ION, nvPizza2-H16S58
著者Tame, J.R.H, Voet, A.R.D.
登録日2016-02-07
公開日2017-02-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Broken Symmetry: Partial domain swapping in an artificial trimeric protein
To Be Published
6LF2
DownloadVisualize
BU of 6lf2 by Molmil
SeviL bound to asialo-GM1 saccharide
分子名称: SeviL, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-beta-D-galactopyranose-(1-4)-beta-D-glucopyranose
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
6LF1
DownloadVisualize
BU of 6lf1 by Molmil
SeviL, a GM1b/asialo-GM1 binding lectin
分子名称: CHLORIDE ION, SeviL
著者Kamata, K, Ozeki, Y, Park, S.-Y, Tame, J.R.H.
登録日2019-11-28
公開日2020-12-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The structure of SeviL, a GM1b/asialo-GM1 binding R-type lectin from the mussel Mytilisepta virgata.
Sci Rep, 10, 2020
4YNX
DownloadVisualize
BU of 4ynx by Molmil
Structure of YdiE from E. coli
分子名称: SULFATE ION, Uncharacterized protein YdiE
著者Tame, J.R.H, Nishimura, K, Zhang, K.Y.J.
登録日2015-03-11
公開日2015-05-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献The crystal and solution structure of YdiE from Escherichia coli
Acta Crystallogr.,Sect.F, 71, 2015
5Z01
DownloadVisualize
BU of 5z01 by Molmil
Native Escherichia coli L,D-carboxypeptidase A (LdcA)
分子名称: MAGNESIUM ION, Murein tetrapeptide carboxypeptidase
著者Meyer, K, Tame, J.R.H.
登録日2017-12-18
公開日2018-04-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献The crystal structure and oligomeric form of Escherichia colil,d-carboxypeptidase A.
Biochem. Biophys. Res. Commun., 499, 2018
5Z03
DownloadVisualize
BU of 5z03 by Molmil
Mutant (S106A) Escherichia coli L,D-carboxypeptidase A (LdcA)
分子名称: Murein tetrapeptide carboxypeptidase
著者Meyer, K, Tame, J.R.H.
登録日2017-12-18
公開日2018-04-25
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.755 Å)
主引用文献The crystal structure and oligomeric form of Escherichia colil,d-carboxypeptidase A.
Biochem. Biophys. Res. Commun., 499, 2018
5XG5
DownloadVisualize
BU of 5xg5 by Molmil
Crystal structure of Mitsuba-1 with bound NAcGal
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose, MITSUBA-1
著者Terada, D, Voet, A.R.D, Kamata, K, Zhang, K.Y.J, Tame, J.R.H.
登録日2017-04-12
公開日2017-07-12
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Computational design of a symmetrical beta-trefoil lectin with cancer cell binding activity.
Sci Rep, 7, 2017
1AL3
DownloadVisualize
BU of 1al3 by Molmil
COFACTOR BINDING FRAGMENT OF CYSB FROM KLEBSIELLA AEROGENES
分子名称: CYS REGULON TRANSCRIPTIONAL ACTIVATOR CYSB, SULFATE ION
著者Verschueren, K.H.G, Tyrrell, R, Wilkinson, A.J.
登録日1997-06-10
公開日1997-12-24
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献The structure of the cofactor-binding fragment of the LysR family member, CysB: a familiar fold with a surprising subunit arrangement.
Structure, 5, 1997
9F14
DownloadVisualize
BU of 9f14 by Molmil
The crystal structure of full length tetramer CysB from Klebsiella aerogenes in complex with N-acetylserine
分子名称: HTH-type transcriptional regulator CysB, N-ACETYL-SERINE
著者Verschueren, K.H.G, Dodson, E.J, Wilkinson, A.J.
登録日2024-04-18
公開日2024-07-24
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The Structure of the LysR-type Transcriptional Regulator, CysB, Bound to the Inducer, N-acetylserine.
Eur.Biophys.J., 53, 2024
9FDD
DownloadVisualize
BU of 9fdd by Molmil
The crystal structure of full length tetramer CysB from Klebsiella aerogenes in complex with N-acetylserine
分子名称: HTH-type transcriptional regulator CysB, N-ACETYL-SERINE
著者Verschueren, K.H.G, Dodson, E.J, Wilkinson, A.J.
登録日2024-05-16
公開日2024-07-03
最終更新日2024-08-28
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The Structure of the LysR-type Transcriptional Regulator, CysB, Bound to the Inducer, N-acetylserine.
Eur.Biophys.J., 53, 2024

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon