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6R47
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BU of 6r47 by Molmil
The structure of pistol ribozyme bound to magnesium
分子名称: MAGNESIUM ION, RNA, RNA (50-MER)
著者Lilley, D.M.J, Wilson, T.M, Liu, Y.
登録日2019-03-22
公開日2019-07-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes.
J.Am.Chem.Soc., 141, 2019
6GRC
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BU of 6grc by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Sodium
分子名称: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
著者Lilley, D.M.J, Liu, Y, Freeman, D.J.
登録日2018-06-11
公開日2018-09-26
最終更新日2019-02-13
実験手法X-RAY DIFFRACTION (2.452 Å)
主引用文献A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRD
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BU of 6grd by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Cesium
分子名称: CESIUM ION, DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), ...
著者Lilley, D.M.J, Liu, Y, Freeman, D.J.
登録日2018-06-11
公開日2018-09-26
最終更新日2018-11-28
実験手法X-RAY DIFFRACTION (2.66 Å)
主引用文献A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
6GRB
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BU of 6grb by Molmil
eukaryotic junction-resolving enzyme GEN-1 binding with Potassium
分子名称: DNA (5'-D(*TP*AP*CP*CP*CP*AP*CP*CP*AP*CP*CP*GP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*GP*AP*GP*CP*GP*GP*TP*GP*GP*TP*TP*GP*GP*T)-3'), MAGNESIUM ION, ...
著者Lilley, D.M.J, Liu, Y, Freeman, D.J.
登録日2018-06-11
公開日2018-09-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A monovalent ion in the DNA binding interface of the eukaryotic junction-resolving enzyme GEN1.
Nucleic Acids Res., 46, 2018
8ITS
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BU of 8its by Molmil
Crystal structure of DUF-3268 k-junction
分子名称: MAGNESIUM ION, RNA (46-MER)
著者Li, M, Lilley, D.M.J, Huang, L.
登録日2023-03-22
公開日2024-03-27
実験手法X-RAY DIFFRACTION (1.94 Å)
主引用文献Crystal structure of DUF-3268 k-junction
To Be Published
8I3Z
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BU of 8i3z by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3'), ...
著者Peng, X, Lilley, D.M.J, Huang, L.
登録日2023-01-18
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.67 Å)
主引用文献Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
5FK5
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SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-14
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3.315 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
7V9E
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Crystal structure of a methyl transferase ribozyme
分子名称: BARIUM ION, GUANINE, RNA (68-MER), ...
著者Deng, J, Lilley, D.M.J, Huang, L.
登録日2021-08-25
公開日2022-03-23
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and mechanism of a methyltransferase ribozyme.
Nat.Chem.Biol., 18, 2022
4AOB
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SAM-I riboswitch containing the T. solenopsae Kt-23 in complex with S- adenosyl methionine
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Schroeder, K.T, Daldrop, P, McPhee, S.A, Lilley, D.M.J.
登録日2012-03-25
公開日2012-05-09
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Structure and Folding of a Rare, Natural Kink Turn in RNA with an Aa Pair at the 2B2N Position.
RNA, 18, 2012
7EAG
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Crystal structure of the RAGATH-18 k-turn
分子名称: RNA (5'-R(*GP*UP*CP*UP*AP*UP*GP*AP*AP*GP*GP*CP*UP*GP*GP*AP*GP*AP*C)-3')
著者Huang, L, Lilley, D.M.J.
登録日2021-03-07
公開日2021-06-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
7EAF
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BU of 7eaf by Molmil
Crystal structure of SAM-I riboswitch with the Actinomyces-1 k-turn
分子名称: BARIUM ION, RNA (94-MER), S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2021-03-07
公開日2021-06-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Structure and folding of four putative kink turns identified in structured RNA species in a test of structural prediction rules.
Nucleic Acids Res., 49, 2021
8HB3
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BU of 8hb3 by Molmil
Crystal structure of NAD-II riboswitch (two strands) with NR
分子名称: Nicotinamide riboside, RNA (31-MER), RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')
著者Peng, X, Lilley, D.M.J, Huang, L.
登録日2022-10-27
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB1
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Crystal structure of NAD-II riboswitch (two strands) with NMN
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, MAGNESIUM ION, RNA (30-MER), ...
著者Peng, X, Lilley, D.M.J, Huang, L.
登録日2022-10-27
公開日2023-03-22
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HBA
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Crystal structure of NAD-II riboswitch (single strand) with NAD
分子名称: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, RNA (55-MER)
著者Peng, X, Lilley, D.M.J, Huang, L.
登録日2022-10-27
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
8HB8
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BU of 8hb8 by Molmil
Crystal structure of NAD-II riboswitch (single strand) with NMN
分子名称: BARIUM ION, BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE, RNA (55-MER)
著者Peng, X, Lilley, D.M.J, Huang, L.
登録日2022-10-27
公開日2023-03-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of the NAD+-II riboswitch reveal two distinct ligand-binding pockets.
Nucleic Acids Res., 51, 2023
6Q8U
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Structure of the standard kink turn HmKt-7 variant A2bm6A bound with AfL7Ae protein
分子名称: 50S ribosomal protein L7Ae, RNA (5'-R(*CP*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*CP*G)-3'), SODIUM ION
著者Huang, L, Lilley, D.M.J.
登録日2018-12-16
公開日2019-07-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6Q8V
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Structure of the standard kink turn HmKt-7 variant A2bm6A.
分子名称: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*(6MZ)P*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Huang, L, Lilley, D.M.J.
登録日2018-12-16
公開日2019-07-03
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Effect of methylation of adenine N6on kink turn structure depends on location.
Rna Biol., 16, 2019
6QN3
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BU of 6qn3 by Molmil
Structure of the Glutamine II Riboswitch
分子名称: BROMIDE ION, GLUTAMINE, MAGNESIUM ION, ...
著者Huang, L, Lilley, D.M.J.
登録日2019-02-08
公開日2019-06-12
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure and ligand binding of the glutamine-II riboswitch.
Nucleic Acids Res., 47, 2019
5FKD
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BU of 5fkd by Molmil
SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA
分子名称: BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
著者Huang, L, Lilley, D.M.J.
登録日2015-10-15
公開日2016-05-25
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function.
Nucleic Acids Res., 44, 2016
6FZ0
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BU of 6fz0 by Molmil
Crystal structure of the metY SAM V riboswitch
分子名称: MAGNESIUM ION, S-ADENOSYLMETHIONINE, SODIUM ION, ...
著者Huang, L, Lilley, D.M.J.
登録日2018-03-13
公開日2018-07-04
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (2.499 Å)
主引用文献Structure and ligand binding of the SAM-V riboswitch.
Nucleic Acids Res., 46, 2018
6HCT
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BU of 6hct by Molmil
Crystal structure of Archeoglobus fulgidus L7Ae bound to its cognate UTR k-turn
分子名称: 50S ribosomal protein L7Ae, RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*G)-3'), RNA (5'-R(*GP*CP*CP*GP*AP*UP*GP*AP*AP*UP*GP*CP*AP*UP*GP*AP*AP*GP*C)-3'), ...
著者Huang, L, Lilley, D.M.J.
登録日2018-08-16
公開日2018-10-31
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.091 Å)
主引用文献The role of RNA structure in translational regulation by L7Ae protein in archaea.
RNA, 25, 2019
6HBX
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BU of 6hbx by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine
分子名称: N-ETHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
著者Huang, L, Lilley, D.M.J.
登録日2018-08-13
公開日2019-02-20
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6HBT
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The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine
分子名称: 1-(4-carbamimidamidobutyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SULFATE ION
著者Huang, L, Lilley, D.M.J.
登録日2018-08-13
公開日2019-02-20
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
6HC5
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BU of 6hc5 by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine
分子名称: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
著者Huang, L, Lilley, D.M.J.
登録日2018-08-14
公開日2019-02-20
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.413 Å)
主引用文献Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019
4BW0
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BU of 4bw0 by Molmil
The molecular recognition of kink turn structure by the L7Ae class of proteins
分子名称: 50S RIBOSOMAL PROTEIN L7AE, HMKT-7, SULFATE ION
著者Huang, L, Lilley, D.M.J.
登録日2013-06-29
公開日2013-11-06
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins.
RNA, 19, 2013

 

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