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3VQM
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BU of 3vqm by Molmil
Small heat shock protein hsp14.0 of C-terminal deletion variant with C-terminal peptide
分子名称: C-terminal peptide from Small heat shock protein StHsp14.0, Small heat shock protein StHsp14.0
著者Hanazono, Y, Takeda, K, Miki, K.
登録日2012-03-26
公開日2012-06-06
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural studies on the oligomeric transition of a small heat shock protein, StHsp14.0
J.Mol.Biol., 422, 2012
3A6M
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Crystal structure of GrpE from Thermus thermophilus HB8
分子名称: Protein grpE
著者Nakamura, A, Takumi, K, Miki, K.
登録日2009-09-03
公開日2010-01-12
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Crystal structure of a thermophilic GrpE protein: insight into thermosensing function for the DnaK chaperone system
J.Mol.Biol., 396, 2010
3WCU
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BU of 3wcu by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Deoxygenated form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCV
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BU of 3wcv by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: CA bound form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WCW
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BU of 3wcw by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: MG bound form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3A5C
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Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
分子名称: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
著者Numoto, N, Hasegawa, Y, Takeda, K, Miki, K.
登録日2009-08-06
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.51 Å)
主引用文献Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
Embo Rep., 10, 2009
2ZZW
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BU of 2zzw by Molmil
Crystal Structure of a Periplasmic Substrate Binding Protein in Complex with Zinc and Lactate
分子名称: ABC transporter, solute-binding protein, LACTIC ACID, ...
著者Akiyama, N, Takeda, K, Miki, K.
登録日2009-02-27
公開日2009-08-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of a periplasmic substrate-binding protein in complex with calcium lactate
J.Mol.Biol., 392, 2009
3AAC
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Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal
分子名称: Putative uncharacterized protein ST1653
著者Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K.
登録日2009-11-13
公開日2010-11-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3WJV
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BU of 3wjv by Molmil
Crystal structure of the L68E variant of mLolB
分子名称: Outer-membrane lipoprotein LolB, SULFATE ION
著者Takeda, K, Tokuda, H, Miki, K.
登録日2013-10-16
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
3WCT
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BU of 3wct by Molmil
The structure of a deoxygenated 400 kda hemoglobin provides a more accurate description of the cooperative mechanism of giant hemoglobins: Oxygenated form
分子名称: A1 globin chain of giant V2 hemoglobin, A2 globin chain of giant V2 hemoglobin, B1 globin chain of giant V2 hemoglobin, ...
著者Numoto, N, Nakagawa, T, Ohara, R, Hasegawa, T, Kita, A, Yoshida, T, Maruyama, T, Imai, K, Fukumori, Y, Miki, K.
登録日2013-06-01
公開日2014-06-04
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献The structure of a deoxygenated 400 kDa haemoglobin reveals ternary- and quaternary-structural changes of giant haemoglobins
Acta Crystallogr.,Sect.D, 70, 2014
3WOA
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BU of 3woa by Molmil
Crystal structure of lambda repressor (1-45) fused with maltose-binding protein
分子名称: Repressor protein CI, Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Hanazono, Y, Takeda, K, Miki, K.
登録日2013-12-25
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor.
FEBS Open Bio, 8, 2018
3WMM
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BU of 3wmm by Molmil
Crystal structure of the LH1-RC complex from Thermochromatium tepidum in C2 form
分子名称: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
著者Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K.
登録日2013-11-22
公開日2014-04-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.008 Å)
主引用文献Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom
Nature, 508, 2014
2ZC8
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BU of 2zc8 by Molmil
Crystal structure of N-Acylamino Acid Racemase from Thermus thermophilus HB8
分子名称: N-acylamino acid racemase
著者Hayashida, M, Kim, S.H, Takeda, K, Hisano, T, Miki, K.
登録日2007-11-05
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Crystal structure of N-acylamino acid racemase from Thermus thermophilus HB8
Proteins, 71, 2008
3W3A
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BU of 3w3a by Molmil
Crystal structure of V1-ATPase at 3.9 angstrom resolution
分子名称: ADENOSINE-5'-DIPHOSPHATE, V-type ATP synthase alpha chain, V-type ATP synthase beta chain, ...
著者Nagamatsu, Y, Takeda, K, Kuranaga, T, Numoto, N, Miki, K.
登録日2012-12-14
公開日2013-05-15
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.9 Å)
主引用文献Origin of Asymmetry at the Intersubunit Interfaces of V1-ATPase from Thermusthermophilus
J.Mol.Biol., 425, 2013
3AAB
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BU of 3aab by Molmil
Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal
分子名称: GLYCEROL, ISOPROPYL ALCOHOL, Putative uncharacterized protein ST1653
著者Takeda, K, Hayashi, T, Abe, T, Hirano, Y, Hanazono, Y, Yohda, M, Miki, K.
登録日2009-11-13
公開日2010-11-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.851 Å)
主引用文献Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0
J.Struct.Biol., 174, 2011
3WJU
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BU of 3wju by Molmil
Crystal structure of the L68D variant of mLolB from Escherichia coli
分子名称: Outer-membrane lipoprotein LolB, SULFATE ION
著者Takeda, K, Tokuda, H, Miki, K.
登録日2013-10-16
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
2Z4I
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BU of 2z4i by Molmil
Crystal structure of the Cpx pathway activator NlpE from Escherichia coli
分子名称: Copper homeostasis protein cutF, HEXAETHYLENE GLYCOL, SULFATE ION
著者Hirano, Y, Hossain, M.M, Takeda, K, Tokuda, H, Miki, K.
登録日2007-06-18
公開日2007-09-04
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli
Structure, 15, 2007
2Z6W
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Crystal structure of human cyclophilin D in complex with cyclosporin A
分子名称: CITRIC ACID, CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
著者Kajitani, K, Fujihashi, M, Kobayashi, Y, Shimizu, S, Tsujimoto, Y, Miki, K.
登録日2007-08-09
公開日2008-04-29
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (0.96 Å)
主引用文献Crystal Structure of Human Cyclophilin D in Complex with its Inhibitor, Cyclosporin a at 0.96-A Resolution.
Proteins, 70, 2008
3WJT
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BU of 3wjt by Molmil
Crystal structure of the L68D variant of mLolB
分子名称: CHLORIDE ION, Outer-membrane lipoprotein LolB, SULFATE ION
著者Takeda, K, Tokuda, H, Miki, K.
登録日2013-10-16
公開日2014-03-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Roles of the Protruding Loop of Factor B Essential for the Localization of Lipoproteins (LolB) in the Anchoring of Bacterial Triacylated Proteins to the Outer Membran
J.Biol.Chem., 289, 2014
2ZPD
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BU of 2zpd by Molmil
Crystal structure of the R43L mutant of LolA in the open form
分子名称: Outer-membrane lipoprotein carrier protein
著者Takeda, K, Yokota, N, Oguchi, Y, Tokuda, H, Miki, K.
登録日2008-07-10
公開日2008-08-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Opening and closing of the hydrophobic cavity of LolA coupled to lipoprotein binding and release.
J.Biol.Chem., 283, 2008
2Z4H
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BU of 2z4h by Molmil
Crystal structure of the Cpx pathway activator NlpE from Escherichia coli
分子名称: Copper homeostasis protein cutF, SULFATE ION
著者Hirano, Y, Hossain, M.M, Takeda, K, Tokuda, H, Miki, K.
登録日2007-06-18
公開日2007-09-04
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structural Studies of the Cpx Pathway Activator NlpE on the Outer Membrane of Escherichia coli
Structure, 15, 2007
3A5D
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BU of 3a5d by Molmil
Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
分子名称: V-type ATP synthase alpha chain, V-type ATP synthase beta chain, V-type ATP synthase subunit D, ...
著者Numoto, N, Hasegawa, Y, Takeda, K, Miki, K.
登録日2009-08-06
公開日2009-10-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (4.8 Å)
主引用文献Inter-subunit interaction and quaternary rearrangement defined by the central stalk of prokaryotic V1-ATPase
Embo Rep., 10, 2009
3AZC
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BU of 3azc by Molmil
Crystal structure of the soluble part of cytochrome b6f complex iron-sulfur subunit from Thermosynechococcus elongatus BP-1
分子名称: Cytochrome b6-f complex iron-sulfur subunit, FE2/S2 (INORGANIC) CLUSTER
著者Veit, S, Takeda, K, Tsunoyama, Y, Roegner, M, Miki, K.
登録日2011-05-23
公開日2012-05-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of a thermophilic cyanobacterial b(6)f-type Rieske protein
Acta Crystallogr.,Sect.D, 68, 2012
3W07
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Atomic resolution structure of orotidine 5'-monophosphate decarboxylase from Methanothermobacter thermoautotrophicus bound with UMP.
分子名称: GLYCEROL, Orotidine 5'-phosphate decarboxylase, URIDINE-5'-MONOPHOSPHATE
著者Fujihashi, M, Pai, E.F, Miki, K.
登録日2012-10-22
公開日2013-02-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.03 Å)
主引用文献Atomic resolution structure of the orotidine 5'-monophosphate decarboxylase product complex combined with surface plasmon resonance analysis: implications for the catalytic mechanism.
J.Biol.Chem., 288, 2013
3VX3
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Crystal structure of [NiFe] hydrogenase maturation protein HypB from Thermococcus kodakarensis KOD1
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ATPase involved in chromosome partitioning, ...
著者Sasaki, D, Watanabe, S, Miki, K.
登録日2012-09-09
公開日2013-02-27
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Identification and Structure of a Novel Archaeal HypB for [NiFe] Hydrogenase Maturation
J.Mol.Biol., 425, 2013

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