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2R4P
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Crystal structure of the long-chain fatty acid transporter FadL mutant G212E
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-08-31
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R4O
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BU of 2r4o by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta NPA
分子名称: LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-08-31
公開日2008-09-16
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2R88
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BU of 2r88 by Molmil
Crystal structure of the long-chain fatty acid transporter FadL mutant delta S3 kink
分子名称: Long-chain fatty acid transport protein
著者Hearn, E.M, Patel, D.R, Lepore, B.W, Indic, M, van den Berg, B.
登録日2007-09-10
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Transmembrane passage of hydrophobic compounds through a protein channel wall
Nature, 458, 2009
2ODJ
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BU of 2odj by Molmil
Crystal structure of the outer membrane protein OprD from Pseudomonas aeruginosa
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
著者Biswas, S, van den Berg, B.
登録日2006-12-22
公開日2007-10-16
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structural insight into OprD substrate specificity.
Nat.Struct.Mol.Biol., 14, 2007
2QTK
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BU of 2qtk by Molmil
Crystal Structure of the outer membrane protein opdK from Pseudomonas aeruginosa
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Probable porin
著者Biswas, S, Van den Berg, B.
登録日2007-08-02
公開日2008-06-24
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the Outer Membrane Protein OpdK from Pseudomonas aeruginosa.
Structure, 16, 2008
4FOZ
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BU of 4foz by Molmil
Crystal Structure of OccD1 (OprD) Y282R/D307H
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Porin D
著者Eren, E, van den Berg, B.
登録日2012-06-21
公開日2013-03-13
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Toward Understanding the Outer Membrane Uptake of Small Molecules by Pseudomonas aeruginosa.
J.Biol.Chem., 288, 2013
4DCB
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BU of 4dcb by Molmil
Y. pestis Plasminogen Activator Pla in Complex with Human Plasminogen Activation Loop Peptide ALP11
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, ...
著者Eren, E, van den Berg, B.
登録日2012-01-17
公開日2012-06-06
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.033 Å)
主引用文献Structural basis for activation of an integral membrane protease by lipopolysaccharide.
J.Biol.Chem., 287, 2012
4FRT
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BU of 4frt by Molmil
Crystal Structure of Pseudomonas aeruginosa OccK7 (OpdD)
分子名称: Probable porin
著者Eren, E, van den Berg, B.
登録日2012-06-26
公開日2013-07-24
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.166 Å)
主引用文献Crystal Structures of OccK Subfamily Proteins
To be Published
4RL8
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BU of 4rl8 by Molmil
Crystal structure of the COG4313 outer membrane channel from Pseudomonas putida F1
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, PHOSPHATE ION, Protein involved in meta-pathway of phenol degradation-like protein
著者van den Berg, B.
登録日2014-10-16
公開日2015-07-29
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of a COG4313 outer membrane channel.
Sci Rep, 5, 2015
1PIS
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BU of 1pis by Molmil
SOLUTION STRUCTURE OF PORCINE PANCREATIC PHOSPHOLIPASE A2
分子名称: CALCIUM ION, PHOSPHOLIPASE A2
著者Van Den Berg, B.D, Tessari, M, De Haas, G.H, Verheij, H.M, Boelens, R, Kaptein, R.
登録日1994-12-22
公開日1995-06-03
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of porcine pancreatic phospholipase A2.
EMBO J., 14, 1995
1PIR
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BU of 1pir by Molmil
SOLUTION STRUCTURE OF PORCINE PANCREATIC PHOSPHOLIPASE A2
分子名称: CALCIUM ION, PHOSPHOLIPASE A2
著者Van Den Berg, B.D, Tessari, M, De Haas, G.H, Verheij, H.M, Boelens, R, Kaptein, R.
登録日1994-12-22
公開日1995-06-03
最終更新日2022-02-23
実験手法SOLUTION NMR
主引用文献Solution structure of porcine pancreatic phospholipase A2.
EMBO J., 14, 1995
6YTC
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BU of 6ytc by Molmil
Solution NMR structure of the isolated NTE domain of BT1762-63 levan transporter
分子名称: TonB-dependent receptor
著者Rath, P, Mazur, A, Hiller, S.
登録日2020-04-24
公開日2020-07-08
最終更新日2024-06-19
実験手法SOLUTION NMR
主引用文献Insights into SusCD-mediated glycan import by a prominent gut symbiont.
Nat Commun, 12, 2021
7QFN
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BU of 7qfn by Molmil
Human Topoisomerase II Beta ATPase ADP
分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
著者Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
登録日2021-12-06
公開日2022-05-25
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.621 Å)
主引用文献A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
7QFO
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BU of 7qfo by Molmil
Human Topoisomerase II Beta ATPase AMPPNP
分子名称: ALANINE, DNA topoisomerase 2-beta, MAGNESIUM ION, ...
著者Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
登録日2021-12-06
公開日2022-05-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
5LX8
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BU of 5lx8 by Molmil
Crystal structure of BT1762
分子名称: SODIUM ION, SULFATE ION, SusD homolog
著者Basle, A.
登録日2016-09-20
公開日2016-12-14
最終更新日2017-08-30
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural basis for nutrient acquisition by dominant members of the human gut microbiota.
Nature, 541, 2017
7ZBG
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BU of 7zbg by Molmil
Human Topoisomerase II Beta ATPase ADP
分子名称: 4-[(2S,3R)-3-[3,5-bis(oxidanylidene)piperazin-1-ium-1-yl]butan-2-yl]piperazin-4-ium-2,6-dione, ADENOSINE-5'-DIPHOSPHATE, DNA topoisomerase 2-beta, ...
著者Ling, E.M, Basle, A, Cowell, I.G, Blower, T.R, Austin, C.A.
登録日2022-03-23
公開日2022-05-25
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A comprehensive structural analysis of the ATPase domain of human DNA topoisomerase II beta bound to AMPPNP, ADP, and the bisdioxopiperazine, ICRF193.
Structure, 30, 2022
7ZNR
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BU of 7znr by Molmil
Inactive D62N mutant of BT1760 Endo-acting levanase from Bacteroides thetaiotaomicron VPI-5482
分子名称: SULFATE ION, Sucrose-6-phosphate hydrolase, beta-D-fructofuranose-(2-6)-beta-D-fructofuranose, ...
著者Basle, A, Bolam, D.
登録日2022-04-21
公開日2023-06-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
7ZNS
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BU of 7zns by Molmil
Inactive D62N mutant of BT1760 Endo-acting levanase from Bacteroides thetaiotaomicron VPI-5482
分子名称: Glycoside hydrolase family 32, SULFATE ION, beta-D-fructofuranose-(2-6)-beta-D-fructofuranose, ...
著者Basle, A, Bolam, D.
登録日2022-04-21
公開日2023-06-21
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Outer membrane utilisomes mediate glycan uptake in gut Bacteroidetes.
Nature, 618, 2023
6SLI
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BU of 6sli by Molmil
Structure of the RagAB peptide transporter
分子名称: (1R,4S,6R)-6-({[2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-GLUCOPYRANOSYL]OXY}METHYL)-4-HYDROXY-1-{[(15-METHYLHEXADECANOYL)OXY]METHYL}-4-OXIDO-7-OXO-3,5-DIOXA-8-AZA-4-PHOSPHAHEPTACOS-1-YL 15-METHYLHEXADECANOATE, (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, ALA-SER-THR-THR-GLY-GLY-ASN-SER-GLN-ARG-GLY-SER-GLY, ...
著者Madej, M, Ranson, N.A, White, J.B.R.
登録日2019-08-19
公開日2020-05-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.38 Å)
主引用文献Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Nat Microbiol, 5, 2020
6SLN
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Structure of the RagAB peptide transporter
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, DODECYL-BETA-D-MALTOSIDE, ...
著者Madej, M, Ranson, N.A, White, J.B.R.
登録日2019-08-20
公開日2020-05-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.61 Å)
主引用文献Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Nat Microbiol, 5, 2020
6SLJ
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BU of 6slj by Molmil
Structure of the RagAB peptide transporter
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, 1,2-Distearoyl-sn-glycerophosphoethanolamine, ALA-SER-THR-THR-GLY-ALA-ASN-SER-GLN-ARG, ...
著者Madej, M, Ranson, N.A, White, J.B.R.
登録日2019-08-20
公開日2020-05-20
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.04 Å)
主引用文献Structural and functional insights into oligopeptide acquisition by the RagAB transporter from Porphyromonas gingivalis.
Nat Microbiol, 5, 2020
3PF1
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BU of 3pf1 by Molmil
E. coli FadL Asp348Ala mutant
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, LAURYL DIMETHYLAMINE-N-OXIDE, Long-chain fatty acid transport protein
著者Vandenberg, B, Lepore, B.W, Hearn, E.M, Indic, M, Patel, D.
登録日2010-10-27
公開日2011-05-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献From the Cover: Ligand-gated diffusion across the bacterial outer membrane.
Proc.Natl.Acad.Sci.USA, 108, 2011
7VTZ
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BU of 7vtz by Molmil
Chitoporin from Escherichia coli
分子名称: Chitoporin, DODECYL-BETA-D-MALTOSIDE, PLATINUM (II) ION
著者Amornloetwattana, R, Soysa, H.S.M, Suginta, W, van den Berg, B.
登録日2021-11-01
公開日2022-11-09
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of chitoporin from Escherichia coli
To Be Published
8BM0
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BU of 8bm0 by Molmil
Structure of GroEL:GroES-ATP complex plunge frozen 200 ms after reaction initiation
分子名称: ADENOSINE-5'-TRIPHOSPHATE, Chaperonin GroEL, Co-chaperonin GroES, ...
著者Dhurandhar, M, Torino, S, Efremov, R.
登録日2022-11-10
公開日2023-08-09
最終更新日2024-01-31
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Time-resolved cryo-EM using a combination of droplet microfluidics with on-demand jetting.
Nat.Methods, 20, 2023
3SZV
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BU of 3szv by Molmil
Crystal structure of Pseudomonas aeruginosa OccK3 (OpdO)
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, Pyroglutatmate porin OpdO
著者Bert van den, B, Elif, E.
登録日2011-07-19
公開日2012-02-08
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
Plos Biol., 10, 2012

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