7X1L
| Malate dehydrogenase from Geobacillus stearothermophilus (gs-MDH) delta E311 mutant complexed with Nicotinamide Adenine Dinucleotide (NAD+) | 分子名称: | Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y. | 登録日 | 2022-02-24 | 公開日 | 2022-10-19 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.28 Å) | 主引用文献 | Reducing substrate inhibition of malate dehydrogenase from Geobacillus stearothermophilus by C-terminal truncation. Protein Eng.Des.Sel., 35, 2022
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1EM2
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1PFK
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4GA6
| Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates | 分子名称: | ADENOSINE MONOPHOSPHATE, Putative thymidine phosphorylase, SULFATE ION | 著者 | Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2012-07-25 | 公開日 | 2013-05-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2.21 Å) | 主引用文献 | Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization J.Mol.Biol., 425, 2013
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4GA4
| Crystal structure of AMP phosphorylase N-terminal deletion mutant | 分子名称: | PHOSPHATE ION, Putative thymidine phosphorylase | 著者 | Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2012-07-25 | 公開日 | 2013-05-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.51 Å) | 主引用文献 | Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization J.Mol.Biol., 425, 2013
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4GA5
| Crystal structure of AMP phosphorylase C-terminal deletion mutant in the apo-form | 分子名称: | Putative thymidine phosphorylase | 著者 | Nishitani, Y, Aono, R, Nakamura, A, Sato, T, Atomi, H, Imanaka, T, Miki, K. | 登録日 | 2012-07-25 | 公開日 | 2013-05-15 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (3.25 Å) | 主引用文献 | Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization J.Mol.Biol., 425, 2013
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4GPG
| X/N joint refinement of Achromobacter Lyticus Protease I free form at pD8.0 | 分子名称: | Protease 1 | 著者 | Ohnishi, Y, Yamada, T, Kurihara, K, Tanaka, I, Sakiyama, F, Masaki, T, Niimura, N. | 登録日 | 2012-08-21 | 公開日 | 2013-09-11 | 最終更新日 | 2023-11-08 | 実験手法 | NEUTRON DIFFRACTION (1.895 Å), X-RAY DIFFRACTION | 主引用文献 | Neutron and X-ray crystallographic analysis of Achromobacter protease I at pD 8.0: protonation states and hydration structure in the free-form. Biochim.Biophys.Acta, 1834, 2013
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1I9Y
| CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN | 分子名称: | PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE | 著者 | Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H. | 登録日 | 2001-03-21 | 公開日 | 2001-05-16 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase. Cell(Cambridge,Mass.), 105, 2001
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1I9Z
| CRYSTAL STRUCTURE OF INOSITOL POLYPHOSPHATE 5-PHOSPHATASE DOMAIN (IPP5C) OF SPSYNAPTOJANIN IN COMPLEX WITH INOSITOL (1,4)-BISPHOSPHATE AND CALCIUM ION | 分子名称: | CALCIUM ION, D-MYO-INOSITOL-1,4-BISPHOSPHATE, PHOSPHATIDYLINOSITOL PHOSPHATE PHOSPHATASE | 著者 | Tsujishita, Y, Guo, S, Stolz, L, York, J.D, Hurley, J.H. | 登録日 | 2001-03-21 | 公開日 | 2001-05-16 | 最終更新日 | 2024-02-07 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase. Cell(Cambridge,Mass.), 105, 2001
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1I56
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1J35
| Crystal Structure of Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein | 分子名称: | CALCIUM ION, Coagulation factor IX, Coagulation factor IX-binding protein B chain, ... | 著者 | Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H. | 登録日 | 2003-01-20 | 公開日 | 2003-07-08 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | 主引用文献 | Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein J.Biol.Chem., 278, 2003
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1J34
| Crystal Structure of Mg(II)-and Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein | 分子名称: | CALCIUM ION, Coagulation factor IX, MAGNESIUM ION, ... | 著者 | Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H. | 登録日 | 2003-01-20 | 公開日 | 2003-07-08 | 最終更新日 | 2023-11-15 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein J.Biol.Chem., 278, 2003
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5HEE
| Crystal structure of the TK2203 protein | 分子名称: | GLYCEROL, Putative uncharacterized protein, TK2203 protein, ... | 著者 | Nishitani, Y, Miki, K. | 登録日 | 2016-01-06 | 公開日 | 2016-06-29 | 最終更新日 | 2024-03-20 | 実験手法 | X-RAY DIFFRACTION (1.41 Å) | 主引用文献 | Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase Acta Crystallogr.,Sect.F, 72, 2016
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7F8D
| Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) G218Y mutant | 分子名称: | Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE | 著者 | Shimozawa, Y, Himiyama, T, Nakamura, T, Nishiya, Y. | 登録日 | 2021-07-02 | 公開日 | 2022-02-23 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | 主引用文献 | Increasing loop flexibility affords low-temperature adaptation of a moderate thermophilic malate dehydrogenase from Geobacillus stearothermophilus. Protein Eng.Des.Sel., 34, 2021
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6KV0
| Ferredoxin I from C. reinhardtii, high X-ray dose | 分子名称: | BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ... | 著者 | Onishi, Y, Kurisu, G, Tanaka, H. | 登録日 | 2019-09-03 | 公開日 | 2020-05-20 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii. J.Biochem., 167, 2020
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6KUM
| Ferredoxin I from C. reinhardtii, low X-ray dose | 分子名称: | BENZAMIDINE, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ... | 著者 | Onishi, Y, Kurisu, G, Tanaka, H. | 登録日 | 2019-09-02 | 公開日 | 2020-05-20 | 最終更新日 | 2024-03-27 | 実験手法 | X-RAY DIFFRACTION (1.4 Å) | 主引用文献 | X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii. J.Biochem., 167, 2020
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6LK1
| Ultrahigh resolution X-ray structure of Ferredoxin I from C. reinhardtii | 分子名称: | BENZAMIDINE, FE2/S2 (INORGANIC) CLUSTER, Ferredoxin, ... | 著者 | Onishi, Y, Kurisu, G, Tanaka, H. | 登録日 | 2019-12-17 | 公開日 | 2020-05-27 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (0.9 Å) | 主引用文献 | X-ray dose-dependent structural changes of the [2Fe-2S] ferredoxin from Chlamydomonas reinhardtii. J.Biochem., 167, 2020
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7WLR
| Cryo-EM structure of the nucleosome containing Komagataella pastoris histones | 分子名称: | DNA (145-MER), Histone H2A, Histone H2B, ... | 著者 | Fukushima, Y, Hatazawa, S, Hirai, S, Kujirai, T, Takizawa, Y, Kurumizaka, H. | 登録日 | 2022-01-13 | 公開日 | 2022-07-13 | 最終更新日 | 2024-06-26 | 実験手法 | ELECTRON MICROSCOPY (3.54 Å) | 主引用文献 | Structural and biochemical analyses of the nucleosome containing Komagataella pastoris histones. J.Biochem., 172, 2022
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8J6V
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6KS2
| Structure of anti-Ghrelin receptor antibody | 分子名称: | Fab7881 Heavy Chain (FabH), Fab7881 Light Chain (FabL) | 著者 | Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M. | 登録日 | 2019-08-23 | 公開日 | 2020-08-12 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (1.753 Å) | 主引用文献 | Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode. Nat Commun, 11, 2020
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6KO5
| Complex structure of Ghrelin receptor with Fab | 分子名称: | 6-(4-bromanyl-2-fluoranyl-phenoxy)-2-methyl-3-[[(3~{S})-1-propan-2-ylpiperidin-3-yl]methyl]pyrido[3,2-d]pyrimidin-4-one, Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1, Fab7881 Heavy Chain, ... | 著者 | Shiimura, Y, Horita, S, Asada, H, Hirata, K, Iwata, S, Kojima, M. | 登録日 | 2019-08-08 | 公開日 | 2020-08-12 | 最終更新日 | 2023-11-22 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode. Nat Commun, 11, 2020
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3VLW
| Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide | 分子名称: | AlgQ1, CALCIUM ION, GLYCEROL, ... | 著者 | Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2011-12-05 | 公開日 | 2012-01-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (2 Å) | 主引用文献 | Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry, 51, 2012
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3VLU
| Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate | 分子名称: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid | 著者 | Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2011-12-05 | 公開日 | 2012-01-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.55 Å) | 主引用文献 | Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry, 51, 2012
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3VLV
| Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION | 著者 | Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | 登録日 | 2011-12-05 | 公開日 | 2012-01-25 | 最終更新日 | 2023-11-08 | 実験手法 | X-RAY DIFFRACTION (1.5 Å) | 主引用文献 | Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry, 51, 2012
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7CHD
| AtaT complexed with acetyl-methionyl-tRNAfMet | 分子名称: | N-acetyltransferase domain-containing protein, RNA (77-MER) | 著者 | Yashiro, Y, Tomita, K. | 登録日 | 2020-07-05 | 公開日 | 2020-11-04 | 最終更新日 | 2023-11-29 | 実験手法 | X-RAY DIFFRACTION (3.804 Å) | 主引用文献 | Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli. Nat Commun, 11, 2020
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