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1IR1
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Crystal Structure of Spinach Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase (Rubisco) Complexed with CO2, Mg2+ and 2-Carboxyarabinitol-1,5-Bisphosphate
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, Large subunit of Rubisco, MAGNESIUM ION, ...
著者Mizohata, E, Matsumura, H, Okano, Y, Kumei, M, Takuma, H, Onodera, J, Kato, K, Shibata, N, Inoue, T, Yokota, A, Kai, Y.
登録日2001-08-31
公開日2002-03-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of activated ribulose-1,5-bisphosphate carboxylase/oxygenase from green alga Chlamydomonas reinhardtii complexed with 2-carboxyarabinitol-1,5-bisphosphate.
J.Mol.Biol., 316, 2002
7BWH
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Soluble cytochrome b5 from Ramazzottius varieornatus
分子名称: CHLORIDE ION, Cytochrome b5 heme-binding domain-containing protein, PROTOPORPHYRIN IX CONTAINING FE
著者Kim, J, Inoue, T, Fukuda, Y.
登録日2020-04-14
公開日2020-06-10
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Structure of cytochrome b5unique to tardigrades.
Protein Sci., 29, 2020
1IWA
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RUBISCO FROM GALDIERIA PARTITA
分子名称: SULFATE ION, ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
著者Okano, Y, Mizohata, E, Xie, Y, Matsumura, H, Sugawara, H, Inoue, T, Yokota, A, Kai, Y.
登録日2002-04-30
公開日2003-04-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
FEBS LETT., 527, 2002
2ZA2
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Crystal Structure of the apo-form of orotidine-5'-monophosphate decarboxylase from P.falciparum
分子名称: Orotidine 5'-phosphate decarboxylase
著者Tokuoka, K, Inoue, T.
登録日2007-09-26
公開日2007-12-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase
J.Biochem.(Tokyo), 143, 2008
2ZVI
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Crystal structure of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis
分子名称: 2,3-diketo-5-methylthiopentyl-1-phosphate enolase
著者Tamura, H, Yadani, T, Kai, Y, Inoue, T, Matsumura, H.
登録日2008-11-07
公開日2009-09-01
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of the apo decarbamylated form of 2,3-diketo-5-methylthiopentyl-1-phosphate enolase from Bacillus subtilis
Acta Crystallogr.,Sect.D, 65, 2009
2YVK
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Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis
分子名称: 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase
著者Tamura, H, Inoue, T, Kai, Y, Matsumura, H.
登録日2007-04-13
公開日2008-01-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism
Protein Sci., 17, 2008
2YRF
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Crystal structure of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis complexed with sulfate ion
分子名称: Methylthioribose-1-phosphate isomerase, SULFATE ION
著者Tamura, H, Inoue, T, Kai, Y, Matsumura, H.
登録日2007-04-02
公開日2008-01-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism
Protein Sci., 17, 2008
3AG6
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Crystal Structure of Pantothenate Synthetase from Staphylococcus aureus in complex with pantoyl adenylate
分子名称: ACETIC ACID, PANTOYL ADENYLATE, Pantothenate synthetase, ...
著者Satoh, A, Konishi, S, Tamura, H, Stickland, H.G, Whitney, H.M, Smith, A.G, Matsumura, H, Inoue, T.
登録日2010-03-19
公開日2010-07-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus.
Biochemistry, 49, 2010
2CVD
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BU of 2cvd by Molmil
Crystal structure analysis of human hematopoietic prostaglandin D synthase complexed with HQL-79
分子名称: 4-(BENZHYDRYLOXY)-1-[3-(1H-TETRAAZOL-5-YL)PROPYL]PIPERIDINE, GLUTATHIONE, GLYCEROL, ...
著者Aritake, K, Kado, Y, Inoue, T, Miyano, M, Urade, Y.
登録日2005-06-02
公開日2006-04-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural and Functional Characterization of HQL-79, an Orally Selective Inhibitor of Human Hematopoietic Prostaglandin D Synthase.
J.Biol.Chem., 281, 2006
1WN7
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Crystal structure of archaeal family B DNA polymerase mutant
分子名称: Family B DNA Polymerase, GLYCEROL, NICKEL (II) ION
著者Kuroita, T, Matsumura, H, Yokota, N, Hashimoto, H, Imanaka, T, Inoue, T, Kai, Y.
登録日2004-07-28
公開日2005-08-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases
J.Mol.Biol., 351, 2005
1WLJ
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BU of 1wlj by Molmil
human ISG20
分子名称: ACETATE ION, MANGANESE (II) ION, URIDINE-5'-MONOPHOSPHATE, ...
著者Horio, T, Murai, M, Inoue, T, Hamasaki, T, Tanaka, T, Ohgi, T.
登録日2004-06-28
公開日2004-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of human ISG20, an interferon-induced antiviral ribonuclease
Febs Lett., 577, 2004
1WRF
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BU of 1wrf by Molmil
Refined solution structure of Der f 2, The Major Mite Allergen from Dermatophagoides farinae
分子名称: Mite group 2 allergen Der f 2
著者Ichikawa, S, Takai, T, Inoue, T, Yuuki, T, Okumura, Y, Ogura, K, Inagaki, F, Hatanaka, H.
登録日2004-10-15
公開日2005-04-19
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献NMR Study on the Major Mite Allergen Der f 2: Its Refined Tertiary Structure, Epitopes for Monoclonal Antibodies and Characteristics Shared by ML Protein Group Members
J.Biochem.(Tokyo), 137, 2005
1WDD
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BU of 1wdd by Molmil
Crystal Structure of Activated Rice Rubisco Complexed with 2-Carboxyarabinitol-1,5-bisphosphate
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ...
著者Mizohata, E, Matsumura, H, Ueno, T, Ishida, H, Inoue, T, Makino, A, Mae, T, Kai, Y.
登録日2004-05-13
公開日2004-11-13
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of rice Rubisco and implications for activation induced by positive effectors NADPH and 6-phosphogluconate
J.Mol.Biol., 422, 2012
1X0R
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BU of 1x0r by Molmil
Thioredoxin Peroxidase from Aeropyrum pernix K1
分子名称: 1,2-ETHANEDIOL, Probable peroxiredoxin
著者Nakamura, T, Yamamoto, T, Inoue, T, Matsumura, H, Kobayashi, A, Hagihara, Y, Uegaki, K, Ataka, M, Kai, Y, Ishikawa, K.
登録日2005-03-28
公開日2005-12-20
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1
Proteins, 62, 2006
1WNS
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Crystal structure of family B DNA polymerase from hyperthermophilic archaeon pyrococcus kodakaraensis KOD1
分子名称: DNA POLYMERASE
著者Hashimoto, H, Inoue, T, Kai, Y, Fujiwara, S, Takagi, M, Nishioka, M, Imanaka, T.
登録日2004-08-09
公開日2004-08-17
最終更新日2017-08-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal Structure of DNA Polymerase from Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1
J.Mol.Biol., 306, 2001
1V7Z
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creatininase-product complex
分子名称: MANGANESE (II) ION, N-[(E)-AMINO(IMINO)METHYL]-N-METHYLGLYCINE, SULFATE ION, ...
著者Yoshimoto, T, Tanaka, N, Kanada, N, Inoue, T, Nakajima, Y, Haratake, M, Nakamura, K.T, Xu, Y, Ito, K.
登録日2003-12-26
公開日2004-01-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structures of creatininase reveal the substrate binding site and provide an insight into the catalytic mechanism
J.Mol.Biol., 337, 2004
1WS8
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
分子名称: COPPER (II) ION, GLYCEROL, mavicyanin
著者Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kunishige, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
登録日2004-11-02
公開日2004-11-23
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
1WS7
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Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)
分子名称: COPPER (I) ION, Mavicyanin
著者Xie, Y, Inoue, T, Miyamoto, Y, Matsumura, H, Kataoka, K, Yamaguchi, K, Nojini, M, Suzuki, S, Kai, Y.
登録日2004-11-02
公開日2004-11-23
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural reorganization of the copper binding site involving Thr15 of mavicyanin from Cucurbita pepo medullosa (zucchini) upon reduction.
J.Biochem.(Tokyo), 137, 2005
3WE7
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Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii
分子名称: ACETIC ACID, GLYCEROL, HEXANE-1,6-DIOL, ...
著者Mine, S, Nakamura, T, Fukuda, Y, Inoue, T, Uegaki, K, Sato, T.
登録日2013-07-01
公開日2014-05-07
最終更新日2014-08-20
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase
Febs J., 281, 2014
3WII
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Crystal structure of the Fab fragment of B2212A, a murine monoclonal antibody specific for the third fibronectin domain (Fn3) of human ROBO1.
分子名称: anti-human ROBO1 antibody B2212A Fab heavy chain, anti-human ROBO1 antibody B2212A Fab light chain
著者Nakayama, T, Mizohata, E, Yamashita, T, Nagatoishi, S, Nakakido, M, Iwanari, H, Mochizuki, Y, Kado, Y, Yokota, Y, Sato, R, Tsumoto, K, Fujitani, H, Kodama, T, Hamakubo, T, Inoue, T.
登録日2013-09-12
公開日2015-01-21
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses
Protein Sci., 24, 2015
3WIH
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Crystal structure of the third fibronectin domain (Fn3) of human ROBO1 in complex with the Fab fragment of murine monoclonal antibody B2212A.
分子名称: GLYCEROL, Roundabout homolog 1, anti-human ROBO1 antibody B2212A Fab heavy chain, ...
著者Nakayama, T, Mizohata, E, Yamashita, T, Nagatoishi, M, Iwanari, H, Mochizuki, Y, Kado, Y, Yokota, Y, Sato, R, Tsumoto, K, Fujitani, H, Kodama, T, Hamakubo, T, Inoue, T.
登録日2013-09-12
公開日2015-01-21
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.701 Å)
主引用文献Structural features of interfacial tyrosine residue in ROBO1 fibronectin domain-antibody complex: Crystallographic, thermodynamic, and molecular dynamic analyses
Protein Sci., 24, 2015
3WYQ
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Crystal structure of the low-immunogenic core streptavidin mutant LISA-314 (Y22S/Y83S/R84K/E101D/R103K/E116N) at 1.0 A resolution
分子名称: BIOTIN, GLYCEROL, SULFATE ION, ...
著者Kawato, T, Mizohata, E, Meshizuka, T, Doi, H, Kawamura, T, Matsumura, H, Yumura, K, Tsumoto, K, Kodama, T, Inoue, T, Sugiyama, A.
登録日2014-09-05
公開日2014-12-24
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Crystal structure of streptavidin mutant with low immunogenicity.
J.Biosci.Bioeng., 119, 2015
3WYP
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Crystal structure of wild-type core streptavidin in complex with D-biotin/biotin-D-sulfoxide at 1.3 A resolution
分子名称: BIOTIN, BIOTIN-D-SULFOXIDE, GLYCEROL, ...
著者Kawato, T, Mizohata, E, Meshizuka, T, Doi, H, Kawamura, T, Matsumura, H, Yumura, K, Tsumoto, K, Kodama, T, Inoue, T, Sugiyama, A.
登録日2014-09-05
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Crystal structure of streptavidin mutant with low immunogenicity.
J.Biosci.Bioeng., 119, 2015
3WZN
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Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with biotin at 1.3 A resolution
分子名称: BIOTIN, SULFATE ION, Streptavidin
著者Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
登録日2014-10-01
公開日2015-02-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015
3WZP
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Crystal structure of the core streptavidin mutant V21 (Y22S/N23D/S27D/Y83S/R84K/E101D/R103K/E116N) complexed with iminobiotin long tail (IMNtail) at 1.2 A resolution
分子名称: 6-({5-[(2E,3aS,4S,6aR)-2-iminohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}amino)hexanoic acid, GLYCEROL, Streptavidin
著者Kawato, T, Mizohata, E, Shimizu, Y, Meshizuka, T, Yamamoto, T, Takasu, N, Matsuoka, M, Matsumura, H, Tsumoto, K, Kodama, T, Kanai, M, Doi, H, Inoue, T, Sugiyama, A.
登録日2014-10-01
公開日2015-02-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Structure-based design of a streptavidin mutant specific for an artificial biotin analogue.
J.Biochem., 157, 2015

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