Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
2KJP
DownloadVisualize
BU of 2kjp by Molmil
Solution structure of protein YlbL (BSU15050) from Bacillus subtilis, Northeast Structural Genomics Consortium target sr713a
分子名称: Uncharacterized protein ylbL
著者Liu, Y, Belote, R, Ciccosanti, C, Hamilton, K, Nair, R, Rost, B, Acton, T, Xiao, R, Swapna, G, Everett, J, Montelione, G.T, Prestegard, J, Northeast Structural Genomics Consortium (NESG)
登録日2009-06-05
公開日2009-08-25
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Solution structure of protein YlbL (BSU15050) from Bacillus subtilis, Northeast Structural Genomics Consortium target sr713a
To be Published
6D92
DownloadVisualize
BU of 6d92 by Molmil
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*TP*GP*CP*AP*GP*AP*AP*AP*C)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-27
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
6CRR
DownloadVisualize
BU of 6crr by Molmil
CryoEM structure of human enterovirus D68 full native virion (pH 7.2 and 4 degrees Celsius)
分子名称: viral protein 1, viral protein 2, viral protein 3, ...
著者Liu, Y, Rossmann, M.G.
登録日2018-03-19
公開日2018-12-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献Molecular basis for the acid-initiated uncoating of human enterovirus D68.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CS3
DownloadVisualize
BU of 6cs3 by Molmil
CryoEM structure of human enterovirus D68 expanded 1 particle (pH 7.2 and 4 degrees Celsius)
分子名称: viral protein 1, viral protein 2, viral protein 3, ...
著者Liu, Y, Rossmann, M.G.
登録日2018-03-19
公開日2018-12-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.31 Å)
主引用文献Molecular basis for the acid-initiated uncoating of human enterovirus D68.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6CS5
DownloadVisualize
BU of 6cs5 by Molmil
CryoEM structure of human enterovirus D68 abortive product 2 (pH 7.2 and 4 degrees Celsius)
分子名称: viral protein 1, viral protein 2, viral protein 3
著者Liu, Y, Rossmann, M.G.
登録日2018-03-19
公開日2018-12-19
最終更新日2024-03-13
実験手法ELECTRON MICROSCOPY (3.24 Å)
主引用文献Molecular basis for the acid-initiated uncoating of human enterovirus D68.
Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6D8F
DownloadVisualize
BU of 6d8f by Molmil
RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*TP*GP*CP*AP*GP*TP*TP*TP*AP*AP*C)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-26
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
6D8A
DownloadVisualize
BU of 6d8a by Molmil
RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*TP*GP*CP*AP*GP*AP*AP*TP*AP*AP*C)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-26
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.251 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
6D8P
DownloadVisualize
BU of 6d8p by Molmil
Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CACODYLATE ION, ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-26
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
6D9L
DownloadVisualize
BU of 6d9l by Molmil
Ternary RsAgo Complex with Guide RNA and Target DNA Containing G-A Non-canonical Pair
分子名称: DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*AP*GP*CP*AP*GP*TP*AP*AP*C)-3'), MAGNESIUM ION, RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*GP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-30
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
6D95
DownloadVisualize
BU of 6d95 by Molmil
Ternary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical Pair
分子名称: DNA 24-Mer, MAGNESIUM ION, RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-27
公開日2018-08-08
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
3BGG
DownloadVisualize
BU of 3bgg by Molmil
Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP
分子名称: 6-HYDROXYURIDINE-5'-PHOSPHATE, Uridine 5'-monophosphate synthase
著者Liu, Y, Tang, H.L, Wang, X.Y, Kotra, L.P, Pai, E.F.
登録日2007-11-26
公開日2007-12-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal structure of Human Orotidine 5'-monophosphate Decarboxylase complexed with BMP
To be Published
2GJI
DownloadVisualize
BU of 2gji by Molmil
NMR solution structure of VP9 from White Spot Syndrome Virus
分子名称: wsv230
著者Liu, Y, Wu, J.L, Song, J.X, Sivaraman, J, Hew, C.L.
登録日2006-03-30
公開日2006-09-19
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Identification of a Novel Nonstructural Protein, VP9, from White Spot Syndrome Virus: Its Structure Reveals a Ferredoxin Fold with Specific Metal Binding Sites
J.Virol., 80, 2006
6D9K
DownloadVisualize
BU of 6d9k by Molmil
Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, DNA (5'-D(P*TP*CP*GP*TP*CP*AP*CP*CP*TP*GP*GP*GP*CP*AP*GP*TP*AP*AP*C)-3'), ...
著者Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J.
登録日2018-04-30
公開日2018-07-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA.
Cell Rep, 24, 2018
2KSQ
DownloadVisualize
BU of 2ksq by Molmil
The myristoylated yeast ARF1 in a GTP and bicelle bound conformation
分子名称: ADP-ribosylation factor 1, GUANOSINE-5'-TRIPHOSPHATE, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate
著者Liu, Y, Kahn, R, Prestegard, J.
登録日2010-01-12
公開日2010-07-07
最終更新日2011-07-27
実験手法SOLUTION NMR
主引用文献Dynamic structure of membrane-anchored Arf*GTP.
Nat.Struct.Mol.Biol., 17, 2010
4M9V
DownloadVisualize
BU of 4m9v by Molmil
Zfp57 mutant (E182Q) in complex with 5-carboxylcytosine DNA
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ...
著者Liu, Y, Olanrewaju, Y.O, Zhang, X, Cheng, X.
登録日2013-08-15
公開日2013-11-27
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (0.969 Å)
主引用文献DNA recognition of 5-carboxylcytosine by a zfp57 mutant at an atomic resolution of 0.97 angstrom.
Biochemistry, 52, 2013
3BGJ
DownloadVisualize
BU of 3bgj by Molmil
Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-UMP
分子名称: GLYCEROL, URIDINE-5'-MONOPHOSPHATE, Uridine 5'-monophosphate synthase
著者Liu, Y, Tang, H.L, Bello, A.M, Devalla, S, Kotra, L.P, Pai, E.F.
登録日2007-11-26
公開日2008-11-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 6-iodo-UMP
To be Published
2GJ2
DownloadVisualize
BU of 2gj2 by Molmil
Crystal Structure of VP9 from White Spot Syndrome Virus
分子名称: CADMIUM ION, wsv230
著者Liu, Y, Wu, J.L, Song, J.X, Sivaraman, J, Hew, C.L.
登録日2006-03-30
公開日2006-09-19
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Identification of a Novel Nonstructural Protein, VP9, from White Spot Syndrome Virus: Its Structure Reveals a Ferredoxin Fold with Specific Metal Binding Sites
J.Virol., 80, 2006
4J0U
DownloadVisualize
BU of 4j0u by Molmil
Crystal structure of IFIT5/ISG58
分子名称: Interferon-induced protein with tetratricopeptide repeats 5
著者Liu, Y, Liang, H, Feng, F, Yuan, L, Wang, Y.E, Crowley, C, Lv, Z, Li, J, Zeng, S, Cheng, G.
登録日2013-01-31
公開日2013-02-13
実験手法X-RAY DIFFRACTION (1.969 Å)
主引用文献Crystal Structure of IFIT5
To be Published
3BPW
DownloadVisualize
BU of 3bpw by Molmil
Crystal Structure of P. falciparum Orotidine 5'-monophosphate Decarboxylase Complexed with XMP
分子名称: DI(HYDROXYETHYL)ETHER, Orotidine 5'-phosphate decarboxylase, PHOSPHATE ION, ...
著者Liu, Y, Lau, W, Pai, E.F.
登録日2007-12-19
公開日2008-11-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of P. falciparum Orotidine 5'-monophosphate Decarboxylase Complexed with XMP
To be Published
2I8N
DownloadVisualize
BU of 2i8n by Molmil
Solution structure of the second bromodomain of Brd4
分子名称: Bromodomain-containing protein 4
著者Liu, Y, Wu, J.H, Shi, Y.Y.
登録日2006-09-02
公開日2007-09-04
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the second bromodomain of Brd4
To be Published
3BK0
DownloadVisualize
BU of 3bk0 by Molmil
Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP
分子名称: 5-CYANO-URIDINE-5'-MONOPHOSPHATE, GLYCEROL, SULFATE ION, ...
著者Liu, Y, Tang, H.L, Avina, M.E.M, Kotra, L.P, Pai, E.F.
登録日2007-12-05
公開日2008-11-18
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Complexed with 5-CN-UMP
To be Published
2KXY
DownloadVisualize
BU of 2kxy by Molmil
Solution structure of SuR18C from Streptococcus thermophilus. Northeast Structural Genomics Consortium Target SuR18C
分子名称: Uncharacterized protein
著者Liu, Y, Lee, H, Belote, R, Ciccosanti, C, Hamilton, K, Acton, T, Xiao, R, Everett, J, Montelione, G, Prestegard, J, Northeast Structural Genomics Consortium (NESG)
登録日2010-05-13
公開日2010-07-14
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of SuR18C from Streptococcus thermophilus. Northeast Structural Genomics Consortium Target SuR18C
To be Published
2L8O
DownloadVisualize
BU of 2l8o by Molmil
Solution structure of Chr148 from Cytophaga hutchinsonii, Northeast Structural Genomics Consortium Target Chr148
分子名称: Activator of Hsp90 ATPase homologue 1-like C-terminal domain-containing protein
著者Liu, Y, Lee, D, Ciccosanti, C, Nair, L, Rost, B, Acton, T, Xiao, R, Everett, J, Montelione, G, Prestegard, J, Northeast Structural Genomics Consortium (NESG)
登録日2011-01-21
公開日2011-03-02
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Solution structure of Chr148 from Cytophaga hutchinsonii. Northeast Structural Genomics Consortium Target Chr148
To be Published
2OQS
DownloadVisualize
BU of 2oqs by Molmil
Structure of the hDLG/SAP97 PDZ2 in complex with HPV-18 papillomavirus E6 peptide
分子名称: C-terminal HPV-18 E6 peptide, Disks large homolog 1
著者Liu, Y, Baleja, J.D, Henry, G.D, Hegde, R.S.
登録日2007-02-01
公開日2007-09-04
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the hDlg/SAP97 PDZ2 domain and its mechanism of interaction with HPV-18 papillomavirus E6 protein.
Biochemistry, 46, 2007
2P1F
DownloadVisualize
BU of 2p1f by Molmil
Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)
分子名称: GLYCEROL, SODIUM ION, SULFATE ION, ...
著者Liu, Y, Tang, H.L, Pai, E.F.
登録日2007-03-05
公開日2007-04-03
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Human UMP Synthase (C-terminal Domain-Orotidine 5'-Monophosphate Decarboxylase)
TO BE PUBLISHED

221051

件を2024-06-12に公開中

PDB statisticsPDBj update infoContact PDBjnumon