Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
Search by PDB author
3CZ3
DownloadVisualize
BU of 3cz3 by Molmil
Crystal structure of Tomato Aspermy Virus 2b in complex with siRNA
分子名称: Protein 2b, RNA (5'-R(P*CP*GP*UP*AP*CP*GP*CP*GP*GP*AP*AP*UP*AP*CP*UP*UP*CP*GP*A)-3'), RNA (5'-R(P*UP*CP*GP*AP*AP*GP*UP*AP*UP*UP*CP*CP*GP*CP*GP*UP*AP*CP*G)-3')
著者Ma, J.B, Li, F, Ding, S.W, Patel, D.J.
登録日2008-04-27
公開日2009-05-05
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3.23 Å)
主引用文献Structural Basis for siRNA Recognition by 2b, a Viral Suppressor of Non-Cell Autonomous RNA Silencing
To be Published
5J2Y
DownloadVisualize
BU of 5j2y by Molmil
Molecular insight into the regulatory mechanism of the quorum-sensing repressor RsaL in Pseudomonas aeruginosa
分子名称: DNA (26-MER), Regulatory protein
著者Zhao, J, Gan, J, Zhang, J, Kang, H, Kong, W, Zhu, M, Li, F, Song, Y, Qin, J, Liang, H.
登録日2016-03-30
公開日2017-04-12
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of Pseudomonas aeruginosa RsaL bound to promoter DNA reaffirms its role as a global regulator involved in quorum-sensing.
Nucleic Acids Res., 45, 2017
5JD0
DownloadVisualize
BU of 5jd0 by Molmil
crystal structure of ARAP3 RhoGAP domain
分子名称: Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3
著者Bao, H, Li, F, Wu, J, Shi, Y.
登録日2016-04-15
公開日2016-06-22
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural Basis for the Specific Recognition of RhoA by the Dual GTPase-activating Protein ARAP3
J.Biol.Chem., 291, 2016
7UXE
DownloadVisualize
BU of 7uxe by Molmil
Pseudomonas phage E217 small terminase (TerS)
分子名称: Small terminase
著者Lokareddy, R.K, Hou, C.-F.D, Doll, S.G, Li, F, Gillilan, R, Forti, F, Briani, F, Cingolani, G.
登録日2022-05-05
公開日2022-09-28
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.38 Å)
主引用文献Terminase Subunits from the Pseudomonas-Phage E217.
J.Mol.Biol., 434, 2022
4YRA
DownloadVisualize
BU of 4yra by Molmil
mouse TDH in the apo form
分子名称: L-threonine 3-dehydrogenase, mitochondrial
著者He, C, Li, F.
登録日2015-03-14
公開日2016-02-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Structural insights on mouse l-threonine dehydrogenase: A regulatory role of Arg180 in catalysis
J.Struct.Biol., 192, 2015
7KKJ
DownloadVisualize
BU of 7kkj by Molmil
Structure of anti-SARS-CoV-2 Spike nanobody mNb6
分子名称: CHLORIDE ION, SULFATE ION, Synthetic nanobody mNb6
著者Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
登録日2020-10-27
公開日2020-11-25
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
7KKK
DownloadVisualize
BU of 7kkk by Molmil
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
登録日2020-10-27
公開日2020-11-11
最終更新日2021-04-21
実験手法ELECTRON MICROSCOPY (3.03 Å)
主引用文献An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
7KKL
DownloadVisualize
BU of 7kkl by Molmil
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein, ...
著者Schoof, M.S, Faust, B.F, Saunders, R.A, Sangwan, S, Rezelj, V, Hoppe, N, Boone, M, Billesboelle, C.B, Puchades, C, Azumaya, C.M, Kratochvil, H.T, Zimanyi, M, Desphande, I, Liang, J, Dickinson, S, Nguyen, H.C, Chio, C.M, Merz, G.E, Thompson, M.C, Diwanji, D, Schaefer, K, Anand, A.A, Dobzinski, N, Zha, B.S, Simoneau, C.R, Leon, K, White, K.M, Chio, U.S, Gupta, M, Jin, M, Li, F, Liu, Y, Zhang, K, Bulkley, D, Sun, M, Smith, A.M, Rizo, A.N, Moss, F, Brilot, A.F, Pourmal, S, Trenker, R, Pospiech, T, Gupta, S, Barsi-Rhyne, B, Belyy, V, Barile-Hill, A.W, Nock, S, Liu, Y, Krogan, N.J, Ralston, C.Y, Swaney, D.L, Garcia-Sastre, A, Ott, M, Vignuzzi, M, Walter, P, Manglik, A, QCRG Structural Biology Consortium
登録日2020-10-27
公開日2020-11-11
最終更新日2021-04-21
実験手法ELECTRON MICROSCOPY (2.85 Å)
主引用文献An ultrapotent synthetic nanobody neutralizes SARS-CoV-2 by stabilizing inactive Spike.
Science, 370, 2020
1R8B
DownloadVisualize
BU of 1r8b by Molmil
Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide
分子名称: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Xiong, Y, Li, F, Wang, J, Weiner, A.M, Steitz, T.A.
登録日2003-10-23
公開日2003-12-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes
Mol.Cell, 12, 2003
7SZ6
DownloadVisualize
BU of 7sz6 by Molmil
Kinetically trapped Pseudomonas-phage PaP3 portal protein - delta barrel mutant class-3
分子名称: Portal protein
著者Hou, C.-F.D, Swanson, N.A, Li, F, Yang, R, Lokareddy, R.K, Cingolani, G.
登録日2021-11-25
公開日2022-03-30
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (6.24 Å)
主引用文献Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.
J.Mol.Biol., 434, 2022
7SZ4
DownloadVisualize
BU of 7sz4 by Molmil
Kinetically trapped Pseudomonas-phage PaP3 portal protein - delta barrel mutant class-2
分子名称: Portal protein
著者Hou, C.-F.D, Swanson, N.A, Li, F, Yang, R, Lokareddy, R.K, Cingolani, G.
登録日2021-11-25
公開日2022-03-30
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (4.8 Å)
主引用文献Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.
J.Mol.Biol., 434, 2022
7SYA
DownloadVisualize
BU of 7sya by Molmil
Kinetically trapped Pseudomonas-phage PaP3 portal protein - Full Length
分子名称: Portal protein
著者Hou, C.F.D, Swanson, N.A, Li, F, Yang, R, Lokareddy, R.K, Cingolani, G.
登録日2021-11-24
公開日2022-04-20
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (3.5 Å)
主引用文献Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.
J.Mol.Biol., 434, 2022
7SXK
DownloadVisualize
BU of 7sxk by Molmil
Kinetically trapped Pseudomonas-phage PaP3 portal protein - Full Length
分子名称: Portal protein
著者Hou, C.F.D, Swanson, N.A, Li, F, Yang, R, Lokareddy, R.K, Cingolani, G.
登録日2021-11-23
公開日2022-04-20
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM Structure of a Kinetically Trapped Dodecameric Portal Protein from the Pseudomonas-phage PaP3.
J.Mol.Biol., 434, 2022
1R89
DownloadVisualize
BU of 1r89 by Molmil
Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide Complexes
分子名称: CHLORIDE ION, CYTIDINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Xiong, Y, Li, F, Wang, J, Weiner, A.M, Steitz, T.A.
登録日2003-10-23
公開日2003-12-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes
Mol.Cell, 12, 2003
1R8C
DownloadVisualize
BU of 1r8c by Molmil
Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide
分子名称: MANGANESE (II) ION, SODIUM ION, URIDINE 5'-TRIPHOSPHATE, ...
著者Xiong, Y, Li, F, Wang, J, Weiner, A.M, Steitz, T.A.
登録日2003-10-23
公開日2003-12-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes
Mol.Cell, 12, 2003
6ACV
DownloadVisualize
BU of 6acv by Molmil
the solution NMR structure of MBD domain
分子名称: Methyl-CpG-binding domain-containing protein 11
著者Li, S.L, Feng, Y.Y, Zhou, Y, Ding, Y.M, Liu, K, Nie, Y, Li, F, Yang, Y.Y.
登録日2018-07-27
公開日2019-07-31
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献the solution NMR structure of MBD domains
To Be Published
5ZN9
DownloadVisualize
BU of 5zn9 by Molmil
Crystal structure of PX domain
分子名称: SULFATE ION, Sorting nexin-27
著者Li, Y, Zhu, Z, Li, F, Liao, S, Xu, C.
登録日2018-04-08
公開日2019-04-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.776 Å)
主引用文献Crystal structure of PX domain
To Be Published
1R8A
DownloadVisualize
BU of 1r8a by Molmil
Crystal Structures of an Archaeal Class I CCA-Adding Enzyme and Its Nucleotide Complexes
分子名称: MANGANESE (II) ION, SODIUM ION, tRNA nucleotidyltransferase
著者Xiong, Y, Li, F, Wang, J, Weiner, A.M, Steitz, T.A.
登録日2003-10-23
公開日2003-12-16
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structures of an archaeal class I CCA-adding enzyme and its nucleotide complexes
Mol.Cell, 12, 2003
8G7B
DownloadVisualize
BU of 8g7b by Molmil
SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, Spike glycoprotein
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.2 Å)
主引用文献SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3
To Be Published
8G70
DownloadVisualize
BU of 8g70 by Molmil
SARS-CoV-2 spike/nanobody mixture complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, ...
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献SARS-CoV-2 spike/nanobody mixture complex
To Be Published
8G76
DownloadVisualize
BU of 8g76 by Molmil
SARS-CoV-2 spike/Nb5 complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-5, ...
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献SARS-CoV-2 spike/Nb5 complex
To Be Published
8G77
DownloadVisualize
BU of 8g77 by Molmil
SARS-CoV-2 spike/Nb6 complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-6, ...
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (2.8 Å)
主引用文献SARS-CoV-2 spike/Nb6 complex
To Be Published
8G7A
DownloadVisualize
BU of 8g7a by Molmil
SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-3, Spike glycoprotein
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 (local refinement)
To Be Published
8G78
DownloadVisualize
BU of 8g78 by Molmil
Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-5, Nanosota-6, ...
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Local refinement of SARS-CoV-2 spike/nanobody mixture complex around NTD
To Be Published
8G7C
DownloadVisualize
BU of 8g7c by Molmil
local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Nanosota-4, Spike glycoprotein
著者Ye, G, Bu, F, Liu, B, Li, F.
登録日2023-02-16
公開日2024-02-21
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献local refinement of SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound
To Be Published

221716

件を2024-06-26に公開中

PDB statisticsPDBj update infoContact PDBjnumon