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1ZI0
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BU of 1zi0 by Molmil
A Superhelical Spiral in Escherichia coli DNA Gyrase A C-terminal Domain Imparts Unidirectional Supercoiling Bias
分子名称: DNA gyrase subunit A
著者Ruthenburg, A.J, Graybosch, D.M, Huetsch, J.C, Verdine, G.L.
登録日2005-04-26
公開日2005-05-24
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献A superhelical spiral in the Escherichia coli DNA gyrase A C-terminal domain imparts unidirectional supercoiling bias
J.Biol.Chem., 280, 2005
1P59
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BU of 1p59 by Molmil
Structure of a non-covalent Endonuclease III-DNA Complex
分子名称: 5'-D(*AP*AP*GP*AP*CP*GP*(5IU)P*GP*GP*AP*C)-3', 5'-D(TP*GP*(5IU)P*CP*CP*AP*(3DR)P*GP*(5IU)P*CP*T)-3', Endonuclease III, ...
著者Fromme, J.C, Verdine, G.L.
登録日2003-04-25
公開日2003-07-15
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of a Trapped Endonuclease III-DNA Covalent Intermediate
Embo J., 22, 2003
1R2Y
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BU of 1r2y by Molmil
MutM (Fpg) bound to 8-oxoguanine (oxoG) containing DNA
分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
著者Fromme, J.C, Verdine, G.L.
登録日2003-09-30
公開日2003-10-14
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.34 Å)
主引用文献DNA Lesion Recognition by the Bacterial Repair Enzyme MutM.
J.Biol.Chem., 278, 2003
3SAR
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BU of 3sar by Molmil
MUTM Slanted complex 1
分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*(CX2) P*TP*AP*CP*C)-3', Formamidopyrimidine-DNA glycosylase, ...
著者Banerjee, A, Qi, Y, Spong, M.C, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SAW
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BU of 3saw by Molmil
MUTM Slanted complex 8 with R112A mutation
分子名称: 5'-D(*A*GP*GP*TP*AP*GP*AP*CP*AP*AP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*C*CP*TP*TP*GP*TP*(CX2)P*TP*AP*CP*C)-3', DNA GLYCOSYLASE, ...
著者Qi, Y, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SBJ
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BU of 3sbj by Molmil
MutM slanted complex 7
分子名称: 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*AP*GP*G)-3', 5'-D(P*CP*CP*TP*GP*GP*TP*(CX)P*TP*AP*CP*C)-3', Formamidopyrimidine-DNA glycosylase, ...
著者Sung, R.J, Zhang, M, Verdine, G.L.
登録日2011-06-05
公開日2012-01-11
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SAU
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BU of 3sau by Molmil
MUTM Interrogation complex 6
分子名称: 5'-D(*A*GP*GP*TP*AP*GP*AP*CP*CP*AP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*T*CP*CP*TP*GP*GP*(TX2) P*CP*TP*AP*CP*C)-3', DNA GLYCOSYLASE, ...
著者Spong, M.C, Qi, Y, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SAS
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BU of 3sas by Molmil
MUTM Slanted complex 4 with R112A mutation
分子名称: 5'-D(*A*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3', 5'-D(*T*GP*CP*GP*TP*CP*CP*GP*AP*GP*(TX2) P*CP*TP*AP*CP*C)-3', DNA GLYCOSYLASE, ...
著者Qi, Y, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SAV
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BU of 3sav by Molmil
MUTM Slanted complex 8
分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*AP*AP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*T*CP*CP*TP*TP*GP*TP*(CX2)P*TP*AP*CP*C)-3'), DNA GLYCOSYLASE, ...
著者Spong, M.C, Qi, Y, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.125 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3SAT
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BU of 3sat by Molmil
MUTM Slanted complex 6 with R112A mutation
分子名称: 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*AP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*T*CP*CP*TP*GP*GP*(TX2) P*CP*TP*AP*CP*C)-3', DNA GLYCOSYLASE, ...
著者Qi, Y, Verdine, G.L.
登録日2011-06-03
公開日2012-01-11
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Strandwise translocation of a DNA glycosylase on undamaged DNA.
Proc.Natl.Acad.Sci.USA, 109, 2012
3U6E
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BU of 3u6e by Molmil
MutM set 1 TpGo
分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*AP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*TP*(8OG)P*GP*AP*(08Q)P*CP*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ...
著者Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L.
登録日2011-10-12
公開日2012-04-25
最終更新日2013-09-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.
J.Biol.Chem., 287, 2012
3U6Q
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BU of 3u6q by Molmil
MutM set 2 ApGo
分子名称: DNA (5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*AP*(8OG)P*GP*TP*(CX2)P*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ...
著者Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L.
登録日2011-10-12
公開日2012-04-25
最終更新日2013-09-25
実験手法X-RAY DIFFRACTION (1.981 Å)
主引用文献Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.
J.Biol.Chem., 287, 2012
3U6S
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BU of 3u6s by Molmil
MutM set 1 TpG
分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*AP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*TP*GP*GP*AP*(08Q)P*CP*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ...
著者Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L.
登録日2011-10-12
公開日2012-04-25
最終更新日2013-09-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.
J.Biol.Chem., 287, 2012
3U6D
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BU of 3u6d by Molmil
MutM set 1 GpGo
分子名称: DNA (5'-D(*A*GP*GP*TP*AP*GP*AP*TP*CP*CP*CP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*CP*GP*(8OG)P*GP*AP*(TX)P*CP*TP*AP*CP*C)-3'), Formamidopyrimidine-DNA glycosylase, ...
著者Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L.
登録日2011-10-12
公開日2012-04-25
最終更新日2013-09-25
実験手法X-RAY DIFFRACTION (1.87 Å)
主引用文献Sequence-dependent structural variation in DNA undergoing intrahelical inspection by the DNA glycosylase MutM.
J.Biol.Chem., 287, 2012
1A3Q
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BU of 1a3q by Molmil
HUMAN NF-KAPPA-B P52 BOUND TO DNA
分子名称: DNA (5'-D(*GP*GP*GP*GP*AP*AP*TP*CP*CP*CP*C)-3'), DNA (5'-D(*GP*GP*GP*GP*AP*TP*TP*CP*CP*CP*C)-3'), PROTEIN (NUCLEAR FACTOR KAPPA-B P52)
著者Cramer, P, Larson, C.J, Verdine, G.L, Muller, C.W.
登録日1998-01-23
公開日1998-06-11
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of the human NF-kappaB p52 homodimer-DNA complex at 2.1 A resolution.
EMBO J., 16, 1997
1A66
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BU of 1a66 by Molmil
SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES
分子名称: CORE NFATC1, DNA (5'-D(*CP*AP*AP*TP*TP*TP*TP*CP*CP*TP*CP*G)-3'), DNA (5'-D(*CP*GP*AP*GP*GP*AP*AP*AP*AP*TP*TP*G)-3')
著者Zhou, P, Sun, L.J, Doetsch, V, Wagner, G, Verdine, G.L.
登録日1998-03-06
公開日1998-06-17
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献Solution structure of the core NFATC1/DNA complex.
Cell(Cambridge,Mass.), 92, 1998
1BNK
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BU of 1bnk by Molmil
HUMAN 3-METHYLADENINE DNA GLYCOSYLASE COMPLEXED TO DNA
分子名称: DNA (5'-D(*GP*AP*CP*AP*TP*GP*YRRP*TP*TP*GP*CP*CP*T)-3'), DNA (5'-D(*GP*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3'), PROTEIN (3-METHYLADENINE DNA GLYCOSYLASE)
著者Lau, A.Y, Schaerer, O.D, Samson, L, Verdine, G.L, Ellenberger, T.
登録日1998-07-29
公開日1998-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Crystal structure of a human alkylbase-DNA repair enzyme complexed to DNA: mechanisms for nucleotide flipping and base excision.
Cell(Cambridge,Mass.), 95, 1998
1L2D
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BU of 1l2d by Molmil
MutM (Fpg)-DNA Estranged Guanine Mismatch Recognition Complex
分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
著者Fromme, J.C, Verdine, G.L.
登録日2002-02-20
公開日2002-06-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1CW9
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BU of 1cw9 by Molmil
DNA DECAMER WITH AN ENGINEERED CROSSLINK IN THE MINOR GROOVE
分子名称: 5'-D(*CP*CP*AP*GP*(G47)P*CP*CP*TP*GP*G)-3', CALCIUM ION
著者van Aalten, D.M.F, Erlanson, D.A, Verdine, G.L, Joshua-Tor, L.
登録日1999-08-26
公開日1999-10-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献A structural snapshot of base-pair opening in DNA.
Proc.Natl.Acad.Sci.USA, 96, 1999
1L1Z
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BU of 1l1z by Molmil
MutM (Fpg) Covalent-DNA Intermediate
分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
著者Fromme, J.C, Verdine, G.L.
登録日2002-02-20
公開日2002-06-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L2B
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BU of 1l2b by Molmil
MutM (Fpg) DNA End-Product Structure
分子名称: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*GP*TP*CP*C*(AD2))-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ...
著者Fromme, J.C, Verdine, G.L.
登録日2002-02-20
公開日2002-06-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L2C
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BU of 1l2c by Molmil
MutM (Fpg)-DNA Estranged Thymine Mismatch Recognition Complex
分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*TP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
著者Fromme, J.C, Verdine, G.L.
登録日2002-02-20
公開日2002-06-14
最終更新日2023-08-16
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1L1T
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BU of 1l1t by Molmil
MutM (Fpg) Bound to Abasic-Site Containing DNA
分子名称: 5'-D(*AP*G*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*(HPD)P*GP*TP*CP*TP*AP*CP*C)-3', MutM, ...
著者Fromme, J.C, Verdine, G.L.
登録日2002-02-19
公開日2002-06-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into lesion recognition and repair by the bacterial 8-oxoguanine DNA glycosylase MutM.
Nat.Struct.Biol., 9, 2002
1LWW
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BU of 1lww by Molmil
Borohydride-trapped hOgg1 Intermediate Structure Co-Crystallized with 8-bromoguanine
分子名称: 5'-D(*GP*CP*GP*TP*CP*CP*AP*(PED)P*GP*TP*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 8-BROMOGUANINE, ...
著者Fromme, J.C, Bruner, S.D, Yang, W, Karplus, M, Verdine, G.L.
登録日2002-06-03
公開日2003-02-25
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Product-Assisted Catalysis in Base Excision DNA Repair
Nat.Struct.Biol., 10, 2003
1M3H
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BU of 1m3h by Molmil
Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide
分子名称: 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3', 5'-D(P*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3', ...
著者Chung, S.J, Verdine, G.L.
登録日2002-06-27
公開日2004-04-20
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase
Chem.Biol., 11, 2004

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